Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ailuropoda_20melanoleuca_20[refseq_20GCF_5F000004335.2_202009-12-15]
81,467 sequences; 2,299,509,015 total letters
Query= NC_008518.1
Length=174059
Score E
Sequences producing significant alignments: (Bits) Value
seq38 100 3e-16
seq497 93.3 5e-14
>seq38
Length=3903652
Score = 100 bits (110), Expect = 3e-16
Identities = 374/574 (65%), Gaps = 33/574 (6%)
Strand=Plus/Minus
Query 93080 TTGTACATTAAGCACGCAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACT-CATT 93138
||| |||| | || |||||||| ||||||||||| |||| || || || | | ||
Sbjct 2423990 TTGAACATCAGGCGGGCAAAGTCACAGTGTAAACCTTCATCTC-TGCTAATAAATACCTT 2423932
Query 93139 GCTGAATGTTAAACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACT 93198
| ||||| | || || | |||||||||||| |||| || ||| ||
Sbjct 2423931 GGAAAATGTGAGGCCAGGCA----------TTTCTTGAGCCAGAATAACGACGCAGAAAA 2423882
Query 93199 ACCAGaaaaaaaTATACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGC 93258
||||||| | | | ||||||| || ||||| ||||||| ||||| || | | |
Sbjct 2423881 ACCAGAAGAGATTT---CTTCCACAGCAGCAAAGGCCACAACCCGTTCCCCATAGGTAGT 2423825
Query 93259 GGAATTACTGCTGATCCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGT 93318
|| | ||||| | || |||||||| || | ||||| |||||| | ||
Sbjct 2423824 CTCTTTGTCCCCAATCCAATGCAAGGCCCAATCTGCCTCCTTCTTCCCACAAGGCATCGT 2423765
Query 93319 TTCGATAGCGTTAAATAGGTAATCTCGCTCGTCCGAATCTCGTATGTAT--GTATCGA-- 93374
|| || || || || || | || | || | |||||| || | | || ||
Sbjct 2423764 CTCAATGGCATTGAAGAGAAATTCCCTTTCTTTGGAATCTTTAATTTGTCAGTGAGGAGA 2423705
Query 93375 -TTAACAGAGAATACATT-TCAGA---ATGGACATTCTCCATTGCAATTTGGAATCCGTA 93429
| ||| || |||| | ||| ||| ||| ||| | ||||||||||| || ||
Sbjct 2423704 CTGCACATCTCATCCATTCTGAGATATATG---ATT-TCCGTGGCAATTTGGAAGCCATA 2423649
Query 93430 GAAACATCTAGCTTCCGTGATCTGCACTTCTTGAGAAAATCTCTCTACGAGATTTTCATT 93489
|||||| | ||||| || ||||| ||| |||| ||| | ||| || | ||||||||
Sbjct 2423648 GAAACAGCGGGCTTCTGTCATCTGAACTACTTGGCTAAACCGCTCCACCAAGTTTTCATT 2423589
Query 93490 GACTATACCATCGGATGCTGCaaaaaaaGCCAATATATGCTTTATAAAATGTTTCTCATC 93549
||| | ||||| ||||||||| ||||||| | ||| |||||||| ||||
Sbjct 2423588 TACTCTGCCATCACTTGCTGCAAAGAAAGCCAGAACATGGCATATAAAATAGCCCTCA-- 2423531
Query 93550 ATCTTTAAGCTTATCCCA-ATCGGATAGATCTTTTGAAAGATCGACTTCTTCGACAGTCC 93608
||| | | | ||||| | || | || || |||||||| || |||| | ||||
Sbjct 2423530 GGCTTCAGGGAT-TCCCAGCGCCGA-ATGTCCTTGGAAAGATCCACCTCTTTAGCTGTCC 2423473
Query 93609 AAAACGATGCTTCTGCTTTTTTGTACATATCCCA 93642
||| || || || ||||| || | ||| | |||
Sbjct 2423472 GAAAGGAGGCCTCAGCTTTCTTATCCATCTGCCA 2423439
>seq497
Length=1337528
Score = 93.3 bits (102), Expect = 5e-14
Identities = 84/106 (79%), Gaps = 0/106 (0%)
Strand=Plus/Minus
Query 93134 TCATTGCTGAATGTTAAACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCA 93193
|||||| || || | || || | ||| || |||||||||||||| |||||||| |||
Sbjct 317807 TCATTGGAAAACGTGAGGCCAGGCATCAGGCCACGTTTCTTGAGCCAGAATATTGATGCA 317748
Query 93194 AAACTACCAGaaaaaaaTATACCTTCCACGGCTGCAAATGCCACAA 93239
||| ||||||||| || || |||||||| || ||||| |||||||
Sbjct 317747 AAAGAACCAGAAAAGAAGATTCCTTCCACAGCGGCAAAGGCCACAA 317702
Score = 91.5 bits (100), Expect = 2e-13
Identities = 86/110 (78%), Gaps = 0/110 (0%)
Strand=Plus/Minus
Query 93353 GAATCTCGTATGTATGTATCGATTAACAGAGAATACATTTCAGAATGGACATTCTCCATT 93412
|||||| |||||||| || || | ||| ||||| |||||||||| || |||||
Sbjct 315808 GAATCTTTAATGTATGTGTCAATGAGGAGACTGTACATCTCAGAATGGATGTTTTCCATG 315749
Query 93413 GCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTGATCTGCACTTCTTG 93462
||||||||||| || |||||||| | ||||| || ||||| ||||||||
Sbjct 315748 GCAATTTGGAAGCCATAGAAACACCGGGCTTCTGTAATCTGAACTTCTTG 315699
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 556293727765080
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |