Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ailuropoda_20melanoleuca_20[refseq_20GCF_5F000004335.2_202009-12-15] 81,467 sequences; 2,299,509,015 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq38 100 3e-16 seq497 93.3 5e-14 >seq38 Length=3903652 Score = 100 bits (110), Expect = 3e-16 Identities = 374/574 (65%), Gaps = 33/574 (6%) Strand=Plus/Minus Query 93080 TTGTACATTAAGCACGCAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACT-CATT 93138 ||| |||| | || |||||||| ||||||||||| |||| || || || | | || Sbjct 2423990 TTGAACATCAGGCGGGCAAAGTCACAGTGTAAACCTTCATCTC-TGCTAATAAATACCTT 2423932 Query 93139 GCTGAATGTTAAACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACT 93198 | ||||| | || || | |||||||||||| |||| || ||| || Sbjct 2423931 GGAAAATGTGAGGCCAGGCA----------TTTCTTGAGCCAGAATAACGACGCAGAAAA 2423882 Query 93199 ACCAGaaaaaaaTATACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGC 93258 ||||||| | | | ||||||| || ||||| ||||||| ||||| || | | | Sbjct 2423881 ACCAGAAGAGATTT---CTTCCACAGCAGCAAAGGCCACAACCCGTTCCCCATAGGTAGT 2423825 Query 93259 GGAATTACTGCTGATCCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGT 93318 || | ||||| | || |||||||| || | ||||| |||||| | || Sbjct 2423824 CTCTTTGTCCCCAATCCAATGCAAGGCCCAATCTGCCTCCTTCTTCCCACAAGGCATCGT 2423765 Query 93319 TTCGATAGCGTTAAATAGGTAATCTCGCTCGTCCGAATCTCGTATGTAT--GTATCGA-- 93374 || || || || || || | || | || | |||||| || | | || || Sbjct 2423764 CTCAATGGCATTGAAGAGAAATTCCCTTTCTTTGGAATCTTTAATTTGTCAGTGAGGAGA 2423705 Query 93375 -TTAACAGAGAATACATT-TCAGA---ATGGACATTCTCCATTGCAATTTGGAATCCGTA 93429 | ||| || |||| | ||| ||| ||| ||| | ||||||||||| || || Sbjct 2423704 CTGCACATCTCATCCATTCTGAGATATATG---ATT-TCCGTGGCAATTTGGAAGCCATA 2423649 Query 93430 GAAACATCTAGCTTCCGTGATCTGCACTTCTTGAGAAAATCTCTCTACGAGATTTTCATT 93489 |||||| | ||||| || ||||| ||| |||| ||| | ||| || | |||||||| Sbjct 2423648 GAAACAGCGGGCTTCTGTCATCTGAACTACTTGGCTAAACCGCTCCACCAAGTTTTCATT 2423589 Query 93490 GACTATACCATCGGATGCTGCaaaaaaaGCCAATATATGCTTTATAAAATGTTTCTCATC 93549 ||| | ||||| ||||||||| ||||||| | ||| |||||||| |||| Sbjct 2423588 TACTCTGCCATCACTTGCTGCAAAGAAAGCCAGAACATGGCATATAAAATAGCCCTCA-- 2423531 Query 93550 ATCTTTAAGCTTATCCCA-ATCGGATAGATCTTTTGAAAGATCGACTTCTTCGACAGTCC 93608 ||| | | | ||||| | || | || || |||||||| || |||| | |||| Sbjct 2423530 GGCTTCAGGGAT-TCCCAGCGCCGA-ATGTCCTTGGAAAGATCCACCTCTTTAGCTGTCC 2423473 Query 93609 AAAACGATGCTTCTGCTTTTTTGTACATATCCCA 93642 ||| || || || ||||| || | ||| | ||| Sbjct 2423472 GAAAGGAGGCCTCAGCTTTCTTATCCATCTGCCA 2423439 >seq497 Length=1337528 Score = 93.3 bits (102), Expect = 5e-14 Identities = 84/106 (79%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 93134 TCATTGCTGAATGTTAAACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCA 93193 |||||| || || | || || | ||| || |||||||||||||| |||||||| ||| Sbjct 317807 TCATTGGAAAACGTGAGGCCAGGCATCAGGCCACGTTTCTTGAGCCAGAATATTGATGCA 317748 Query 93194 AAACTACCAGaaaaaaaTATACCTTCCACGGCTGCAAATGCCACAA 93239 ||| ||||||||| || || |||||||| || ||||| ||||||| Sbjct 317747 AAAGAACCAGAAAAGAAGATTCCTTCCACAGCGGCAAAGGCCACAA 317702 Score = 91.5 bits (100), Expect = 2e-13 Identities = 86/110 (78%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 93353 GAATCTCGTATGTATGTATCGATTAACAGAGAATACATTTCAGAATGGACATTCTCCATT 93412 |||||| |||||||| || || | ||| ||||| |||||||||| || ||||| Sbjct 315808 GAATCTTTAATGTATGTGTCAATGAGGAGACTGTACATCTCAGAATGGATGTTTTCCATG 315749 Query 93413 GCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTGATCTGCACTTCTTG 93462 ||||||||||| || |||||||| | ||||| || ||||| |||||||| Sbjct 315748 GCAATTTGGAAGCCATAGAAACACCGGGCTTCTGTAATCTGAACTTCTTG 315699 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556293727765080