Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ailuropoda_20melanoleuca_20[refseq_20GCF_5F000004335.2_202009-12-15] 81,467 sequences; 2,299,509,015 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq456 84.2 2e-11 >seq456 Length=1409724 Score = 84.2 bits (92), Expect = 2e-11 Identities = 141/204 (69%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 22213 GTAAAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAA 22272 || || ||||| || || || || || | || || || || |||| || || ||||| Sbjct 1113177 GTCAAAATGCAGATCTTCGTGAAGACCCTGACTGGCAAGACCATCACCCTGGAGGTGGAG 1113236 Query 22273 ACCACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCC 22332 ||| || ||| | || || | || || || ||||| || ||||| || || || Sbjct 1113237 CCCAGTGACACCATCGAGAATGTGAAGGCCAAGATCCAAGATAAAGAGGGCATCCCCCCT 1113296 Query 22333 GATCAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGAT 22392 || || || | || || ||||| ||||| ||| | || ||| |||||| | || ||| Sbjct 1113297 GACCAGCAGAGGCTCATCTTTGCAGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGAT 1113356 Query 22393 TACAACATTCAAAAAGAATCCACC 22416 |||||||| || ||||| || ||| Sbjct 1113357 TACAACATCCAGAAAGAGTCGACC 1113380 Score = 82.4 bits (90), Expect = 6e-11 Identities = 137/198 (69%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || || | || || || || |||| || || ||||| ||| Sbjct 1113411 ATGCAGATCTTCGTGAAGACCCTGACTGGCAAGACCATCACCCTGGAGGTGGAGCCCAGT 1113470 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || || | || || || ||||| || ||||| || || || || || Sbjct 1113471 GACACCATCGAGAATGTGAAGGCCAAGATCCAAGATAAAGAGGGCATCCCCCCTGACCAG 1113530 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || | || || ||||| ||||| ||| | || ||| |||||| | || ||||||||| Sbjct 1113531 CAGAGGCTCATCTTTGCAGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGATTACAAC 1113590 Query 22399 ATTCAAAAAGAATCCACC 22416 || || ||||| || ||| Sbjct 1113591 ATCCAGAAAGAGTCGACC 1113608 Score = 82.4 bits (90), Expect = 6e-11 Identities = 137/198 (69%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || || | || || || || |||| || || ||||| ||| Sbjct 1113639 ATGCAGATCTTCGTGAAGACCCTGACTGGCAAGACCATCACCCTGGAGGTGGAGCCCAGT 1113698 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || || | || || || ||||| || ||||| || || || || || Sbjct 1113699 GACACCATCGAGAATGTGAAGGCCAAGATCCAAGATAAAGAGGGCATCCCCCCTGACCAG 1113758 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || | || || ||||| ||||| ||| | || ||| |||||| | || ||||||||| Sbjct 1113759 CAGAGGCTCATCTTTGCAGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGATTACAAC 1113818 Query 22399 ATTCAAAAAGAATCCACC 22416 || || ||||| || ||| Sbjct 1113819 ATCCAGAAAGAGTCGACC 1113836 Score = 82.4 bits (90), Expect = 6e-11 Identities = 137/198 (69%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || || | || || || || |||| || || ||||| ||| Sbjct 1113867 ATGCAGATCTTCGTGAAGACCCTGACTGGCAAGACCATCACCCTGGAGGTGGAGCCCAGT 1113926 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || || | || || || ||||| || ||||| || || || || || Sbjct 1113927 GACACCATCGAGAATGTGAAGGCCAAGATCCAAGATAAAGAGGGCATCCCCCCTGACCAG 1113986 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || | || || ||||| ||||| ||| | || ||| |||||| | || ||||||||| Sbjct 1113987 CAGAGGCTCATCTTTGCAGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGATTACAAC 1114046 Query 22399 ATTCAAAAAGAATCCACC 22416 || || ||||| || ||| Sbjct 1114047 ATCCAGAAAGAGTCGACC 1114064 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419311260856855