Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ailuropoda_20melanoleuca_20[refseq_20GCF_5F000004335.2_202009-12-15] 81,467 sequences; 2,299,509,015 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq861 111 4e-19 seq182 86.0 1e-11 >seq861 Length=883633 Score = 111 bits (122), Expect = 4e-19 Identities = 141/194 (73%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 288284 CTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGA 288343 |||| ||||| || ||||| | || || | || ||||| | || || ||||| |||| Sbjct 499600 CTTTCTGGATGTTGTAGTCAGAAAGAATGTGGCCATCTTCCAGCTGCTTGCCTGCAAAGA 499541 Query 288344 TCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTT 288403 | || | ||| || | ||||| ||||||||||||||| | || || ||||| || | Sbjct 499540 TGAGCCTCTGCTGGCCAGGGGGGATGCCTTCTTTATCCTGGGTCTTGGCCTTCACATTCT 499481 Query 288404 CTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGA 288463 || | |||||| | ||| | || || ||||| ||||| |||||||| ||||| |||| Sbjct 499480 TCATGGTATCGCTGGGTTCCAACTCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGA 499421 Query 288464 ATATCTGCATTATG 288477 | | ||| ||| || Sbjct 499420 AGACCTGTATTTTG 499407 >seq182 Length=2248111 Score = 86.0 bits (94), Expect = 1e-11 Identities = 103/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 288313 CGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCT 288372 ||||| || || | ||| | || ||||||||||| ||| ||| | || |||||| Sbjct 678722 CGTCCATCGTCCAGTTGCTCGCCAGCGAAGATCAGTGTCTGCTGATCAGGAGGAATTCCT 678663 Query 288373 TCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGC 288432 || ||||||||||| | || || ||| |||||| || ||| ||||| ||||||| Sbjct 678662 TCCTTATCCTGGATCTCGGCCTTTACGCTTTCTACAGTATCTGAGGATTCAACTTCGACA 678603 Query 288433 GTGATCGTCTTCCCGGTCAG 288452 ||||| |||||||| |||| Sbjct 678602 GTGATGGTCTTCCCCATCAG 678583 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178423081529626