Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ailuropoda_20melanoleuca_20[refseq_20GCF_5F000004335.2_202009-12-15]
81,467 sequences; 2,299,509,015 total letters
Query= NC_010240.1
Length=169794
Score E
Sequences producing significant alignments: (Bits) Value
seq17 96.9 4e-15
seq1215 93.3 5e-14
seq471 91.5 2e-13
seq2576 89.7 6e-13
seq323 89.7 6e-13
seq69 86.0 7e-12
seq255 82.4 8e-11
>seq17
Length=4663558
Score = 96.9 bits (106), Expect = 4e-15
Identities = 167/243 (69%), Gaps = 15/243 (6%)
Strand=Plus/Plus
Query 41982 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 42041
||||| || || |||| ||||| |||| ||| ||||| || || ||||| |||| |
Sbjct 4172513 CCTCCCCTCAAGCGCAGGACCAAGTGCAGAGTGGATTCCTTCTGGATGTTGTAGTCAGAC 4172572
Query 42042 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGC 42101
|| || ||| | || || ||||| || || || || || | | ||||||||||| ||
Sbjct 4172573 AGGGTGCGCCCATCTTCCAGCTGTTTCCCCGCAAAGATCAACCTCTGCTGGTCGGGGGGG 4172632
Query 42102 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCC------------ACCGTGTCG 42149
| || |||||||||| || ||| | | || | ||||| | ||||||
Sbjct 4172633 ATGCCCTCCTTGTCC-TG--TTTGTCCTGGATCTTCGCCTTGACGTTCTCGATGGTGTCG 4172689
Query 42150 CTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATT 42209
|| | ||||| || | |||||||| || || || | ||||| || ||||| ||||||
Sbjct 4172690 CTTGGCTCCACCTCCAGGGTGATGGTCTTACCTGTCAAGGTCTTCACGAAGATCTGCATT 4172749
Query 42210 TTC 42212
||
Sbjct 4172750 GTC 4172752
Score = 89.7 bits (98), Expect = 6e-13
Identities = 63/72 (88%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066
|||| || | | |||||||||| ||||||||||||||||||||| |||||||||||||
Sbjct 4183238 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 4183297
Query 57067 TACTACCGAGGA 57078
||||| ||||||
Sbjct 4183298 TACTAACGAGGA 4183309
Score = 87.8 bits (96), Expect = 2e-12
Identities = 63/73 (86%), Gaps = 0/73 (0%)
Strand=Plus/Plus
Query 57006 TCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 57065
||||| || | | |||||||||| ||||||||||||||||||||| ||||| ||||||
Sbjct 4185661 TCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTTACCACT 4185720
Query 57066 ATACTACCGAGGA 57078
|||||| ||||||
Sbjct 4185721 ATACTAACGAGGA 4185733
>seq1215
Length=622372
Score = 93.3 bits (102), Expect = 5e-14
Identities = 66/76 (87%), Gaps = 0/76 (0%)
Strand=Plus/Plus
Query 57003 TTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACC 57062
||| |||| || | | |||||||||| ||||||||||||||||||||| |||||||||
Sbjct 337521 TTTGCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACC 337580
Query 57063 ACTATACTACCGAGGA 57078
||||||||| ||||||
Sbjct 337581 ACTATACTAACGAGGA 337596
Score = 91.5 bits (100), Expect = 2e-13
Identities = 64/73 (88%), Gaps = 0/73 (0%)
Strand=Plus/Minus
Query 57006 TCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 57065
||||| || | | |||||||||| ||||||||||||||||||||| ||||||||||||
Sbjct 274122 TCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACT 274063
Query 57066 ATACTACCGAGGA 57078
|||||| ||||||
Sbjct 274062 ATACTAACGAGGA 274050
>seq471
Length=1376740
Score = 91.5 bits (100), Expect = 2e-13
Identities = 64/73 (88%), Gaps = 0/73 (0%)
Strand=Plus/Minus
Query 57006 TCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 57065
||||| || | | |||||||||| ||||||||||||||||||||| ||||||||||||
Sbjct 1127050 TCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACT 1126991
Query 57066 ATACTACCGAGGA 57078
|||||| ||||||
Sbjct 1126990 ATACTAACGAGGA 1126978
>seq2576
Length=112281
Score = 89.7 bits (98), Expect = 6e-13
Identities = 63/72 (88%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066
|||| || | | |||||||||| ||||||||||||||||||||| |||||||||||||
Sbjct 90940 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 90999
Query 57067 TACTACCGAGGA 57078
||||| ||||||
Sbjct 91000 TACTAACGAGGA 91011
>seq323
Length=1690371
Score = 89.7 bits (98), Expect = 6e-13
Identities = 63/72 (88%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066
|||| || | | |||||||||| ||||||||||||||||||||| |||||||||||||
Sbjct 480748 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 480807
Query 57067 TACTACCGAGGA 57078
||||| ||||||
Sbjct 480808 TACTAACGAGGA 480819
>seq69
Length=3213852
Score = 86.0 bits (94), Expect = 7e-12
Identities = 50/52 (96%), Gaps = 0/52 (0%)
Strand=Plus/Minus
Query 57020 AATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTATACTA 57071
|||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 2058345 AATCGAACCCTGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTATACTA 2058294
>seq255
Length=1922131
Score = 82.4 bits (90), Expect = 8e-11
Identities = 62/73 (85%), Gaps = 0/73 (0%)
Strand=Plus/Plus
Query 57006 TCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 57065
||||| || | || |||||||||| |||||||||||||||||||| ||||||||||||
Sbjct 1261814 TCTCCCCGTCGAGGAATCGAACCCCAGTCTCCCGCGTGACAGGCGGGGATACTCACCACT 1261873
Query 57066 ATACTACCGAGGA 57078
| |||| |||||
Sbjct 1261874 ACACTAAAGAGGA 1261886
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 542659626035280
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |