Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ailuropoda_20melanoleuca_20[refseq_20GCF_5F000004335.2_202009-12-15] 81,467 sequences; 2,299,509,015 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq17 96.9 4e-15 seq1215 93.3 5e-14 seq471 91.5 2e-13 seq2576 89.7 6e-13 seq323 89.7 6e-13 seq69 86.0 7e-12 seq255 82.4 8e-11 >seq17 Length=4663558 Score = 96.9 bits (106), Expect = 4e-15 Identities = 167/243 (69%), Gaps = 15/243 (6%) Strand=Plus/Plus Query 41982 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 42041 ||||| || || |||| ||||| |||| ||| ||||| || || ||||| |||| | Sbjct 4172513 CCTCCCCTCAAGCGCAGGACCAAGTGCAGAGTGGATTCCTTCTGGATGTTGTAGTCAGAC 4172572 Query 42042 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGC 42101 || || ||| | || || ||||| || || || || || | | ||||||||||| || Sbjct 4172573 AGGGTGCGCCCATCTTCCAGCTGTTTCCCCGCAAAGATCAACCTCTGCTGGTCGGGGGGG 4172632 Query 42102 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCC------------ACCGTGTCG 42149 | || |||||||||| || ||| | | || | ||||| | |||||| Sbjct 4172633 ATGCCCTCCTTGTCC-TG--TTTGTCCTGGATCTTCGCCTTGACGTTCTCGATGGTGTCG 4172689 Query 42150 CTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATT 42209 || | ||||| || | |||||||| || || || | ||||| || ||||| |||||| Sbjct 4172690 CTTGGCTCCACCTCCAGGGTGATGGTCTTACCTGTCAAGGTCTTCACGAAGATCTGCATT 4172749 Query 42210 TTC 42212 || Sbjct 4172750 GTC 4172752 Score = 89.7 bits (98), Expect = 6e-13 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| || | | |||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 4183238 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 4183297 Query 57067 TACTACCGAGGA 57078 ||||| |||||| Sbjct 4183298 TACTAACGAGGA 4183309 Score = 87.8 bits (96), Expect = 2e-12 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 57006 TCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 57065 ||||| || | | |||||||||| ||||||||||||||||||||| ||||| |||||| Sbjct 4185661 TCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTTACCACT 4185720 Query 57066 ATACTACCGAGGA 57078 |||||| |||||| Sbjct 4185721 ATACTAACGAGGA 4185733 >seq1215 Length=622372 Score = 93.3 bits (102), Expect = 5e-14 Identities = 66/76 (87%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 57003 TTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACC 57062 ||| |||| || | | |||||||||| ||||||||||||||||||||| ||||||||| Sbjct 337521 TTTGCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACC 337580 Query 57063 ACTATACTACCGAGGA 57078 ||||||||| |||||| Sbjct 337581 ACTATACTAACGAGGA 337596 Score = 91.5 bits (100), Expect = 2e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 57006 TCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 57065 ||||| || | | |||||||||| ||||||||||||||||||||| |||||||||||| Sbjct 274122 TCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACT 274063 Query 57066 ATACTACCGAGGA 57078 |||||| |||||| Sbjct 274062 ATACTAACGAGGA 274050 >seq471 Length=1376740 Score = 91.5 bits (100), Expect = 2e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 57006 TCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 57065 ||||| || | | |||||||||| ||||||||||||||||||||| |||||||||||| Sbjct 1127050 TCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACT 1126991 Query 57066 ATACTACCGAGGA 57078 |||||| |||||| Sbjct 1126990 ATACTAACGAGGA 1126978 >seq2576 Length=112281 Score = 89.7 bits (98), Expect = 6e-13 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| || | | |||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 90940 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 90999 Query 57067 TACTACCGAGGA 57078 ||||| |||||| Sbjct 91000 TACTAACGAGGA 91011 >seq323 Length=1690371 Score = 89.7 bits (98), Expect = 6e-13 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| || | | |||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 480748 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 480807 Query 57067 TACTACCGAGGA 57078 ||||| |||||| Sbjct 480808 TACTAACGAGGA 480819 >seq69 Length=3213852 Score = 86.0 bits (94), Expect = 7e-12 Identities = 50/52 (96%), Gaps = 0/52 (0%) Strand=Plus/Minus Query 57020 AATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTATACTA 57071 |||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 2058345 AATCGAACCCTGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTATACTA 2058294 >seq255 Length=1922131 Score = 82.4 bits (90), Expect = 8e-11 Identities = 62/73 (85%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 57006 TCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 57065 ||||| || | || |||||||||| |||||||||||||||||||| |||||||||||| Sbjct 1261814 TCTCCCCGTCGAGGAATCGAACCCCAGTCTCCCGCGTGACAGGCGGGGATACTCACCACT 1261873 Query 57066 ATACTACCGAGGA 57078 | |||| ||||| Sbjct 1261874 ACACTAAAGAGGA 1261886 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 542659626035280