Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ailuropoda_20melanoleuca_20[refseq_20GCF_5F000004335.2_202009-12-15] 81,467 sequences; 2,299,509,015 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq17 89.7 5e-13 >seq17 Length=4663558 Score = 89.7 bits (98), Expect = 5e-13 Identities = 156/227 (69%), Gaps = 9/227 (4%) Strand=Plus/Plus Query 126896 AATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGA 126955 || |||| ||||| || | || || || || || || ||||| || || ||||| Sbjct 4172522 AAGCGCAGGACCAAGTGCAGAGTGGATTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGC 4172581 Query 126956 GAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCC 127015 ||| || |||||||| || || ||||||| | |||||| ||||| || ||||||||| Sbjct 4172582 CCATCTTCCAGCTGTTTCCCCGCAAAGATCAACCTCTGCTGGTCGGGGGGGATGCCCTCC 4172641 Query 127016 TTGTCC-GT--------GATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 |||||| || ||| ||| ||||| | |||| |||||| | ||| || Sbjct 4172642 TTGTCCTGTTTGTCCTGGATCTTCGCCTTGACGTTCTCGATGGTGTCGCTTGGCTCCACC 4172701 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || | ||| | || || || |||| || || || || |||||||| Sbjct 4172702 TCCAGGGTGATGGTCTTACCTGTCAAGGTCTTCACGAAGATCTGCAT 4172748 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475016579704080