Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ailuropoda_20melanoleuca_20[refseq_20GCF_5F000004335.2_202009-12-15] 81,467 sequences; 2,299,509,015 total letters Query= NC_012783.2 Length=226205 Score E Sequences producing significant alignments: (Bits) Value seq858 165 1e-35 seq116 109 8e-19 >seq858 Length=884820 Score = 165 bits (182), Expect = 1e-35 Identities = 217/301 (72%), Gaps = 0/301 (0%) Strand=Plus/Plus Query 8875 AACTCGGAACGCGGCCAACGGACATCCCTTCACATTGGCACAAATGAGGGACTGAATGGT 8934 ||| | |||||| | || ||||| |||||||| || || ||||| |||||||| | Sbjct 460562 AACACTGAACGCAGTAAAAGGACAGCCCTTCACGTTATTGCAGATGAGAGACTGAATTGA 460621 Query 8935 TGCGGTTTTCACGATGTCTAAACCTACGTCCCCGCCGAAGGTGCTGGGTTTCCAGTACGC 8994 || || || | ||| | || ||||| || || || || ||||| || |||||||| | Sbjct 460622 GGCAGTGTTGATGATTTTAAAGCCTACTTCTCCACCAAAAGTGCTAGGCTTCCAGTAGTC 460681 Query 8995 CGGGGAGCAGATGACGTTCGCCATGAGCCCTTTCAAGGAAAACGGAGCCCCCAGCTCGAT 9054 || || |||||| || |||| || |||||||||||||| || || |||| || | Sbjct 460682 AGGCGAACAGATGGGATTACCCATAAGTCCTTTCAAGGAAAATGGTGCTCCCATTTCTAC 460741 Query 9055 GATGCTCTCACCGAAGATGGCACCGGGACGCGGTTTTTCGACGATGAAGCCAGTGTAGAG 9114 || ||||||| ||||||||| | ||||| || ||||| || | || | ||| || || Sbjct 460742 CATAGTCTCACCAAAGATGGCATCTGGACGAGGCTTTTCTACCAGGAGGGCAGGATACAG 460801 Query 9115 TTCGACAGCCTCGACGTCGCCATAGAGGGCTTCCAACTCGGCAGCTATCTCCTTCTCACC 9174 || | || || | || ||||| ||||| || ||| | ||||| || |||||||| || Sbjct 460802 CTCCATGGCATCAATATCACCATAAAGGGCCTCTAACCCCGCAGCCATTTCCTTCTCTCC 460861 Query 9175 T 9175 | Sbjct 460862 T 460862 Score = 125 bits (138), Expect = 1e-23 Identities = 134/177 (76%), Gaps = 0/177 (0%) Strand=Plus/Plus Query 10121 TCTTACCCCATGCCCCAATCCTGTCGTGAAAGCCGGTCCTCGCACCATATCGGTCCTAAA 10180 |||||||||||| |||| |||| | |||||||| || |||||| ||| ||| | || Sbjct 463177 TCTTACCCCATGGCCCAGTCCTTTGGTGAAAGCTGGCCCTCGCTTATGATCTGTCTTGAA 463236 Query 10181 AAATTGGTGTGTAAAGTGTTGCCCGAAAAAAGCGAACATCAGGTTGGTGCCCTGGGGATC 10240 |||||| || |||||||| || | || || || ||||||| || |||||||||||||| Sbjct 463237 AAATTGATGGGTAAAGTGCTGGGCAAAGAATGCAAACATCATATTTGTGCCCTGGGGATC 463296 Query 10241 GGGGATAAAGGTCCTCCGAATAAAAACTTTGTCCACAATCTGTGTTGAATCGGGCAG 10297 || || || | || | | || || ||| |||||||||| | ||||||| || || Sbjct 463297 AGGAATGAACTTTCTTCTTAGAAGAAATTTTTCCACAATCTCTTTTGAATCAGGAAG 463353 Score = 118 bits (130), Expect = 2e-21 Identities = 199/286 (70%), Gaps = 4/286 (1%) Strand=Plus/Plus Query 9436 CCGGCAATCTGTCTAGTGAACGATTCAACTAATTGGGCTATTCCGTGCTTGATGAGGATG 9495 || ||||| || || |||| ||||| || || |||| | ||| || | | | || Sbjct 461561 CCAGCAATTTGCCTGCTGAATGATTCCACAAACTGGGTAAGTCCATGTTCCAGCAATATA 461620 Query 9496 GAATTGTTGTAAACGAAGTGTTCGTAACCATACTTCGCGTCGCCTATGCGAAAATCATCA 9555 || |||||||| || || |||| | || |||| | ||| |||| | || ||| Sbjct 461621 GAGTTGTTGTAGACAAACTGTTGGAAATTGTACTCCTGGTCATCTATTTGCAAGGTGTCA 461680 Query 9556 GGCAACAGAGAATGCCAGCGGTAGAGGGTATTGAACTCGGCCGCTATTCGGTTCTGGTAC 9615 || | || | ||||||| ||||||| || || ||||| || || || ||||| |||||| Sbjct 461681 GGTAGAAGGGGATGCCAGTGGTAGAGTGTGTTAAACTCAGCAGCAATACGGTTTTGGTAC 461740 Query 9616 TGAAA--GGCGGTACCGAACAGTAACTCCGGGTCAAAGATTAGCTGGAAGTGGTACCCGC 9673 || || | ||| ||| || | |||||||||||| | |||| |||||| || || | Sbjct 461741 TGGAATTGTTGGTT--GAAAAGCAGCTCCGGGTCAAACCTCAGCTTGAAGTGATAACCAC 461798 Query 9674 TGAGTTGCTGGACATACTGTGTGATTATAATGTTAATGGTTTCCCC 9719 | | ||||| ||||| | | || | ||| ||||||||||| || Sbjct 461799 TCAAGTGCTGTACATAGTCTTCAATCACAATCTTAATGGTTTCTCC 461844 Score = 109 bits (120), Expect = 8e-19 Identities = 114/150 (76%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 10387 TCACCTTTCACCCCGAGAGGAGTAGGGCAGTCACGAGGAACCGGAGGCAGAGTTCTCGTA 10446 ||||||||||| || | || || || |||||| || || || || |||| ||| ||| Sbjct 463786 TCACCTTTCACACCCATGGGTGTTGGACAGTCATCAGCCACAGGGGGAAGAGCTCTGGTA 463845 Query 10447 TAATAGGATAGATTCGAAAATGCTTCCCAGCTATTGTAGCCATAATCTAAGTTGTAGAGC 10506 || ||||| ||||| ||||| ||||||||||| || |||||||| || | |||||| Sbjct 463846 TAGTAGGAGAGATTAGAAAAGGCTTCCCAGCTTTTATAGCCATAGTCCACGTTGTAAGTT 463905 Query 10507 GGGGGACTGTCAATCATCTCGGACCTGGCT 10536 || ||||| ||||||| | ||||| ||| Sbjct 463906 GGTGGACTCTCAATCAAATGTGACCTCGCT 463935 >seq116 Length=2671106 Score = 109 bits (120), Expect = 8e-19 Identities = 154/214 (72%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 8963 TCCCCGCCGAAGGTGCTGGGTTTCCAGTACGCCGGGGAGCAGATGACGTTCGCCATGAGC 9022 || || ||||| ||||| || ||||||||| | || ||||||||| ||| | | ||| Sbjct 65656 TCACCACCGAATGTGCTTGGCTTCCAGTACTCTGGAGAGCAGATGGGATTCCCTAGGAGG 65715 Query 9023 CCTTTCAAGGAAAACGGAGCCCCCAGCTCGATGATGCTCTCACCGAAGATGGCACCGGGA 9082 || || | |||||| |||||||| | || || || ||||| || ||||||| ||| Sbjct 65716 CCCTTGAGGGAAAAGGGAGCCCCAATTTCTATCATACTCTCCCCAAAGATGGAGTTTGGA 65775 Query 9083 CGCGGTTTTTCGACGATGAAGCCA-GTGTAGAGTTCGACAGCCTCGACGTCGCCATAGAG 9141 | || || | || | |||| | ||||| || | || |||| ||| ||||| || Sbjct 65776 TGGCACTTCTCCA-GAAGTAGCCCCGGGTAGAACTCCAAGGCATCGATGTCTCCATACAG 65834 Query 9142 GGCTTCCAACTCGGCAGCTATCTCCTTCTCACCT 9175 |||||||||| || || ||||||||||| ||| Sbjct 65835 CTCTTCCAACTCAGCTGCAATCTCCTTCTCCCCT 65868 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 722991000637800