Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ailuropoda_20melanoleuca_20[refseq_20GCF_5F000004335.2_202009-12-15] 81,467 sequences; 2,299,509,015 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq456 129 1e-24 seq17 105 2e-17 seq375 91.5 3e-13 seq39 89.7 1e-12 >seq456 Length=1409724 Score = 129 bits (142), Expect = 1e-24 Identities = 154/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || || ||||||||||||||||| || |||| |||||| |||| | ||| | |||||| Sbjct 1114306 AGAACCAGGTGGAGAGTCGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCT 1114247 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 ||||||||||| || || |||||||| | ||||||||| || || || ||| || Sbjct 1114246 TCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGGGGGATGCCCTCTTTATCT 1114187 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || ||||| |||||| |||| |||||| | | || || |||| ||||| ||| Sbjct 1114186 TGGATCTTGGCCTTCACATTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTC 1114127 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || || || || ||||| || || || Sbjct 1114126 TTGCCAGTCAGGGTCTTCACGAAGATCTG 1114098 Score = 127 bits (140), Expect = 5e-24 Identities = 160/219 (73%), Gaps = 3/219 (1%) Strand=Plus/Minus Query 199417 CAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATC 199476 |||||| ||||| || |||||||| || |||| |||||| |||| | ||| | ||||| Sbjct 1113395 CAGGACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATC 1113336 Query 199477 TTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTC 199536 |||||||||||| || || |||||||| | ||||||||| || || || ||| || Sbjct 1113335 TTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGGGGGATGCCCTCTTTATC 1113276 Query 199537 CTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGT 199596 || ||||| |||||| |||| |||||| | | || || |||| ||||| || Sbjct 1113275 TTGGATCTTGGCCTTCACATTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGT 1113216 Query 199597 CTTACCCGTGAGAGTTTTCACAAAAATTTGGTACATTTT 199635 ||| || || || || ||||| || || || |||||| Sbjct 1113215 CTTGCCAGTCAGGGTCTTCACGAAGATCTG---CATTTT 1113180 Score = 127 bits (140), Expect = 5e-24 Identities = 154/210 (73%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 199417 CAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATC 199476 |||||| ||||| || |||||||| || |||| |||||| |||| | ||| | ||||| Sbjct 1113623 CAGGACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATC 1113564 Query 199477 TTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTC 199536 |||||||||||| || || |||||||| | ||||||||| || || || ||| || Sbjct 1113563 TTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGGGGGATGCCCTCTTTATC 1113504 Query 199537 CTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGT 199596 || ||||| |||||| |||| |||||| | | || || |||| ||||| || Sbjct 1113503 TTGGATCTTGGCCTTCACATTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGT 1113444 Query 199597 CTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||| || || || || ||||| || || || Sbjct 1113443 CTTGCCAGTCAGGGTCTTCACGAAGATCTG 1113414 Score = 127 bits (140), Expect = 5e-24 Identities = 154/210 (73%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 199417 CAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATC 199476 |||||| ||||| || |||||||| || |||| |||||| |||| | ||| | ||||| Sbjct 1113851 CAGGACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATC 1113792 Query 199477 TTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTC 199536 |||||||||||| || || |||||||| | ||||||||| || || || ||| || Sbjct 1113791 TTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGGGGGATGCCCTCTTTATC 1113732 Query 199537 CTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGT 199596 || ||||| |||||| |||| |||||| | | || || |||| ||||| || Sbjct 1113731 TTGGATCTTGGCCTTCACATTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGT 1113672 Query 199597 CTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||| || || || || ||||| || || || Sbjct 1113671 CTTGCCAGTCAGGGTCTTCACGAAGATCTG 1113642 Score = 127 bits (140), Expect = 5e-24 Identities = 154/210 (73%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 199417 CAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATC 199476 |||||| ||||| || |||||||| || |||| |||||| |||| | ||| | ||||| Sbjct 1114079 CAGGACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATC 1114020 Query 199477 TTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTC 199536 |||||||||||| || || |||||||| | ||||||||| || || || ||| || Sbjct 1114019 TTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGGGGGATGCCCTCTTTATC 1113960 Query 199537 CTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGT 199596 || ||||| |||||| |||| |||||| | | || || |||| ||||| || Sbjct 1113959 TTGGATCTTGGCCTTCACATTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGT 1113900 Query 199597 CTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||| || || || || ||||| || || || Sbjct 1113899 CTTGCCAGTCAGGGTCTTCACGAAGATCTG 1113870 >seq17 Length=4663558 Score = 105 bits (116), Expect = 2e-17 Identities = 155/219 (71%), Gaps = 9/219 (4%) Strand=Plus/Plus Query 199417 CAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATC 199476 |||||| | ||| ||||| || ||||| |||| ||||||||||| || || | ||||| Sbjct 4172527 CAGGACCAAGTGCAGAGTGGATTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATC 4172586 Query 199477 TTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAAT----TCCTTCTC 199532 ||||||||| || || || ||||| | | ||||||||| || || ||||| || Sbjct 4172587 TTCCAGCTGTTTCCCCGCAAAGATCAACCTCTGCTGGTCGGGGGGGATGCCCTCCTTGTC 4172646 Query 199533 -----GCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAA 199587 ||||| ||||| ||| ||| |||| |||||| ||| || || |||| Sbjct 4172647 CTGTTTGTCCTGGATCTTCGCCTTGACGTTCTCGATGGTGTCGCTTGGCTCCACCTCCAG 4172706 Query 199588 CGTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| |||||||| || | || ||||| || || || Sbjct 4172707 GGTGATGGTCTTACCTGTCAAGGTCTTCACGAAGATCTG 4172745 >seq375 Length=1568959 Score = 91.5 bits (100), Expect = 3e-13 Identities = 148/211 (70%), Gaps = 4/211 (2%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || || ||||| ||||| ||| | || |||| |||| |||| | | | | |||||| Sbjct 1493371 AGAACCAGGTGCAGAGTTGACCCTTTCTGGATAATGTAATCAGAAAGACTGATGCCATCT 1493312 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 ||||||||||| || | |||||||| | ||||||||| || || |||||| || Sbjct 1493311 TCCAGCTGCTTGCCTACAAAGATGAGCCTCTGCTGGTCAGGGGGGATGCCTTCTTTATCT 1493252 Query 199538 TGAATCTTTTGCTTCACGGATTC--GACGGTGTCTGTTGTTTCTACATCCAACGTGATCG 199595 || ||||| |||||| |||| || ||||| | | ||| || |||| | ||| | Sbjct 1493251 TGGATCTTAGCCTTCAC--ATTCCTGATGGTGTTACTGGGTTCCACCTCCAGAGAGATAG 1493194 Query 199596 TCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 |||| | | || || |||||||| || || Sbjct 1493193 TCTTGCTGATCAGGGTCTTCACAAAGATCTG 1493163 >seq39 Length=3881480 Score = 89.7 bits (98), Expect = 1e-12 Identities = 73/89 (82%), Gaps = 0/89 (0%) Strand=Plus/Plus Query 199440 CCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTCCGGCGAAGA 199499 ||||||| | ||||||||||| |||||| | |||||||||||| ||||| || || |||| Sbjct 2295163 CCTTTTGAATGTTGTAGTCAGACAAAGTACGTCCATCTTCCAGTTGCTTGCCAGCAAAGA 2295222 Query 199500 TGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | || | |||||| || ||| ||||||| Sbjct 2295223 TCAGTCTCTGCTGATCAGGAGGAATTCCT 2295251 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1177691046423289