Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ailuropoda_20melanoleuca_20[refseq_20GCF_5F000004335.2_202009-12-15] 81,467 sequences; 2,299,509,015 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq456 123 3e-23 seq17 120 3e-22 seq861 86.0 7e-12 >seq456 Length=1409724 Score = 123 bits (136), Expect = 3e-23 Identities = 167/233 (72%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 46365 TGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGG 46424 |||| ||||| | |||| ||||| |||| || ||| || ||||| ||||| || | Sbjct 1113411 TGCCACCTCTCAGGCGCAGGACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAATCAG 1113352 Query 46425 ATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCG 46484 | |||||||| | || || ||||||||||| || || || | | ||||||||| | | Sbjct 1113351 AAAGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGGG 1113292 Query 46485 GCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCA 46544 | | || ||| || || |||||| ||| | || | | ||||| || | |||| Sbjct 1113291 GGATGCCCTCTTTATCTTGGATCTTGGCCTTCACATTCTCGATGGTGTCACTGGGCTCCA 1113232 Query 46545 CATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATTTTG 46597 | |||| |||||||| ||||| ||||| || || || ||||| ||||||||| Sbjct 1113231 CCTCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCATTTTG 1113179 Score = 116 bits (128), Expect = 4e-21 Identities = 163/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 46365 TGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGG 46424 |||| ||||| | |||| ||||| |||| || ||| || ||||| ||||| || | Sbjct 1113639 TGCCACCTCTCAGGCGCAGGACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAATCAG 1113580 Query 46425 ATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCG 46484 | |||||||| | || || ||||||||||| || || || | | ||||||||| | | Sbjct 1113579 AAAGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGGG 1113520 Query 46485 GCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCA 46544 | | || ||| || || |||||| ||| | || | | ||||| || | |||| Sbjct 1113519 GGATGCCCTCTTTATCTTGGATCTTGGCCTTCACATTCTCGATGGTGTCACTGGGCTCCA 1113460 Query 46545 CATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 | |||| |||||||| ||||| ||||| || || || ||||| ||||| Sbjct 1113459 CCTCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 1113411 Score = 116 bits (128), Expect = 4e-21 Identities = 163/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 46365 TGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGG 46424 |||| ||||| | |||| ||||| |||| || ||| || ||||| ||||| || | Sbjct 1113867 TGCCACCTCTCAGGCGCAGGACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAATCAG 1113808 Query 46425 ATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCG 46484 | |||||||| | || || ||||||||||| || || || | | ||||||||| | | Sbjct 1113807 AAAGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGGG 1113748 Query 46485 GCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCA 46544 | | || ||| || || |||||| ||| | || | | ||||| || | |||| Sbjct 1113747 GGATGCCCTCTTTATCTTGGATCTTGGCCTTCACATTCTCGATGGTGTCACTGGGCTCCA 1113688 Query 46545 CATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 | |||| |||||||| ||||| ||||| || || || ||||| ||||| Sbjct 1113687 CCTCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 1113639 Score = 116 bits (128), Expect = 4e-21 Identities = 163/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 46365 TGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGG 46424 |||| ||||| | |||| ||||| |||| || ||| || ||||| ||||| || | Sbjct 1114095 TGCCACCTCTCAGGCGCAGGACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAATCAG 1114036 Query 46425 ATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCG 46484 | |||||||| | || || ||||||||||| || || || | | ||||||||| | | Sbjct 1114035 AAAGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGGG 1113976 Query 46485 GCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCA 46544 | | || ||| || || |||||| ||| | || | | ||||| || | |||| Sbjct 1113975 GGATGCCCTCTTTATCTTGGATCTTGGCCTTCACATTCTCGATGGTGTCACTGGGCTCCA 1113916 Query 46545 CATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 | |||| |||||||| ||||| ||||| || || || ||||| ||||| Sbjct 1113915 CCTCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 1113867 Score = 105 bits (116), Expect = 8e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 46366 GCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGA 46425 ||| || || | ||| | ||||| || | || ||| || ||||| ||||| || || Sbjct 1114322 GCCACCCCTCAGACGGAGAACCAGGTGGAGAGTCGACTCTTTCTGGATGTTGTAATCAGA 1114263 Query 46426 TAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGG 46485 |||||||| | || || ||||||||||| || || || | | ||||||||| | || Sbjct 1114262 AAGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGGGG 1114203 Query 46486 CACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCAC 46545 | || ||| || || |||||| ||| | || | | ||||| || | ||||| Sbjct 1114202 GATGCCCTCTTTATCTTGGATCTTGGCCTTCACATTCTCGATGGTGTCACTGGGCTCCAC 1114143 Query 46546 ATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 |||| |||||||| ||||| ||||| || || || ||||| ||||| Sbjct 1114142 CTCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 1114095 >seq17 Length=4663558 Score = 120 bits (132), Expect = 3e-22 Identities = 168/237 (71%), Gaps = 9/237 (4%) Strand=Plus/Plus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 ||||| || || |||| |||| |||| || ||||| ||||| |||||||| || Sbjct 4172513 CCTCCCCTCAAGCGCAGGACCAAGTGCAGAGTGGATTCCTTCTGGATGTTGTAGTCAGAC 4172572 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 || |||||| | || || ||||| || || || || ||||| | ||||||||||| || Sbjct 4172573 AGGGTGCGCCCATCTTCCAGCTGTTTCCCCGCAAAGATCAACCTCTGCTGGTCGGGGGGG 4172632 Query 46487 ACGCTCTCC---------TTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTC 46537 | || |||| |||||| ||||||| ||||| || | | |||||||| Sbjct 4172633 ATGCCCTCCTTGTCCTGTTTGTCCTGGATCTTCGCCTTGACGTTCTCGATGGTGTCGCTT 4172692 Query 46538 GATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATT 46594 | ||||| |||| |||||||| || || |||| || || || ||||| |||||| Sbjct 4172693 GGCTCCACCTCCAGGGTGATGGTCTTACCTGTCAAGGTCTTCACGAAGATCTGCATT 4172749 >seq861 Length=883633 Score = 86.0 bits (94), Expect = 7e-12 Identities = 134/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 46406 TTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATC 46465 || ||||| |||||||| || ||| || | | || || ||||||||||| || || || Sbjct 499598 TTCTGGATGTTGTAGTCAGAAAGAATGTGGCCATCTTCCAGCTGCTTGCCTGCAAAGATG 499539 Query 46466 AAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCC 46525 | | ||||||| | | || | || || || ||| | |||| ||| | || | Sbjct 499538 AGCCTCTGCTGGCCAGGGGGGATGCCTTCTTTATCCTGGGTCTTGGCCTTCACATTCTTC 499479 Query 46526 ACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAG 46585 | || ||||| | ||||| |||| |||||||| ||||| ||||| || || || ||| Sbjct 499478 ATGGTATCGCTGGGTTCCAACTCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAG 499419 Query 46586 ATTTGCATTTTG 46597 | || |||||| Sbjct 499418 ACCTGTATTTTG 499407 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 564662796540840