Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ailuropoda_20melanoleuca_20[refseq_20GCF_5F000004335.2_202009-12-15] 81,467 sequences; 2,299,509,015 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq456 132 5e-26 seq17 129 6e-25 >seq456 Length=1409724 Score = 132 bits (146), Expect = 5e-26 Identities = 168/231 (73%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 38241 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCC 38300 |||||||| || ||||| || || || || ||||| ||||||||| | || || ||| || Sbjct 1113180 AAAATGCAGATCTTCGTGAAGACCCTGACTGGCAAGACCATCACCCTGGAGGTGGAGCCC 1113239 Query 38301 ACCGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGAC 38360 | |||| | | | | | || | || |||| || |||||||| || ||| | ||| Sbjct 1113240 AGTGACACCATCGAGAATGTGAAGGCCAAGATCCAAGATAAAGAGGGCATCCCCCCTGAC 1113299 Query 38361 CAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 38420 || ||| ||||||| | || ||||| |||||||| || | ||||| || || ||| Sbjct 1113300 CAGCAGAGGCTCATCTTTGCAGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGATTAC 1113359 Query 38421 AACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 |||||||| || || |||| ||||| |||| ||||| ||||||| ||| Sbjct 1113360 AACATCCAGAAAGAGTCGACCCTGCACCTGGTCCTGCGCCTGAGAGGTGGC 1113410 Score = 127 bits (140), Expect = 2e-24 Identities = 165/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || || || ||||| ||||||||| | || || ||| ||| Sbjct 1113411 ATGCAGATCTTCGTGAAGACCCTGACTGGCAAGACCATCACCCTGGAGGTGGAGCCCAGT 1113470 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | | | | || | || |||| || |||||||| || ||| | ||||| Sbjct 1113471 GACACCATCGAGAATGTGAAGGCCAAGATCCAAGATAAAGAGGGCATCCCCCCTGACCAG 1113530 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||| ||||||| | || ||||| |||||||| || | ||||| || || |||||| Sbjct 1113531 CAGAGGCTCATCTTTGCAGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGATTACAAC 1113590 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 ||||| || || |||| ||||| |||| ||||| ||||||| ||| Sbjct 1113591 ATCCAGAAAGAGTCGACCCTGCACCTGGTCCTGCGCCTGAGAGGTGGC 1113638 Score = 127 bits (140), Expect = 2e-24 Identities = 165/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || || || ||||| ||||||||| | || || ||| ||| Sbjct 1113639 ATGCAGATCTTCGTGAAGACCCTGACTGGCAAGACCATCACCCTGGAGGTGGAGCCCAGT 1113698 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | | | | || | || |||| || |||||||| || ||| | ||||| Sbjct 1113699 GACACCATCGAGAATGTGAAGGCCAAGATCCAAGATAAAGAGGGCATCCCCCCTGACCAG 1113758 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||| ||||||| | || ||||| |||||||| || | ||||| || || |||||| Sbjct 1113759 CAGAGGCTCATCTTTGCAGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGATTACAAC 1113818 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 ||||| || || |||| ||||| |||| ||||| ||||||| ||| Sbjct 1113819 ATCCAGAAAGAGTCGACCCTGCACCTGGTCCTGCGCCTGAGAGGTGGC 1113866 Score = 127 bits (140), Expect = 2e-24 Identities = 165/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || || || ||||| ||||||||| | || || ||| ||| Sbjct 1113867 ATGCAGATCTTCGTGAAGACCCTGACTGGCAAGACCATCACCCTGGAGGTGGAGCCCAGT 1113926 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | | | | || | || |||| || |||||||| || ||| | ||||| Sbjct 1113927 GACACCATCGAGAATGTGAAGGCCAAGATCCAAGATAAAGAGGGCATCCCCCCTGACCAG 1113986 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||| ||||||| | || ||||| |||||||| || | ||||| || || |||||| Sbjct 1113987 CAGAGGCTCATCTTTGCAGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGATTACAAC 1114046 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 ||||| || || |||| ||||| |||| ||||| ||||||| ||| Sbjct 1114047 ATCCAGAAAGAGTCGACCCTGCACCTGGTCCTGCGCCTGAGAGGTGGC 1114094 Score = 118 bits (130), Expect = 1e-21 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || || || ||||| ||||||||| | || || ||| ||| Sbjct 1114095 ATGCAGATCTTCGTGAAGACCCTGACTGGCAAGACCATCACCCTGGAGGTGGAGCCCAGT 1114154 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | | | | || | || |||| || |||||||| || ||| | ||||| Sbjct 1114155 GACACCATCGAGAATGTGAAGGCCAAGATCCAAGATAAAGAGGGCATCCCCCCTGACCAG 1114214 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||| ||||||| | || ||||| |||||||| || | ||||| || || |||||| Sbjct 1114215 CAGAGGCTCATCTTTGCAGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGATTACAAC 1114274 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 ||||| || || |||| || || |||| || ||| |||| || ||| Sbjct 1114275 ATCCAGAAAGAGTCGACTCTCCACCTGGTTCTCCGTCTGAGGGGTGGC 1114322 >seq17 Length=4663558 Score = 129 bits (142), Expect = 6e-25 Identities = 172/238 (72%), Gaps = 11/238 (5%) Strand=Plus/Minus Query 38243 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCAC 38302 |||||| || ||||| || || | || || || ||||||||| | || || ||| | | Sbjct 4172749 AATGCAGATCTTCGTGAAGACCTTGACAGGTAAGACCATCACCCTGGAGGTGGAGCCAAG 4172690 Query 38303 CGACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAA---------GAGGGAATTC 38352 ||||| | | | |||| | || | || |||| |||||| ||||| || | Sbjct 4172689 CGACACCATCGAGAACG-TCAAGGCGAAGATCCAGGACAAACAGGACAAGGAGGGCATCC 4172631 Query 38353 CCGCCGACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCA 38412 || ||||||| ||| || | || | ||||| ||||||||||| || | ||||||||| Sbjct 4172630 CCCCCGACCAGCAGAGGTTGATCTTTGCGGGGAAACAGCTGGAAGATGGGCGCACCCTGT 4172571 Query 38413 ACGACTACAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 |||||||||||||| |||||| | || ||||| ||||| ||||| ||||| || || Sbjct 4172570 CTGACTACAACATCCAGAAGGAATCCACTCTGCACTTGGTCCTGCGCTTGAGGGGAGG 4172513 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499663455281280