Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ailuropoda_20melanoleuca_20[refseq_20GCF_5F000004335.2_202009-12-15] 81,467 sequences; 2,299,509,015 total letters Query= NC_014637.1 Length=617453 Score E Sequences producing significant alignments: (Bits) Value seq3007 170 8e-37 seq138 109 2e-18 seq603 84.2 9e-11 >seq3007 Length=51886 Score = 170 bits (188), Expect = 8e-37 Identities = 355/526 (67%), Gaps = 7/526 (1%) Strand=Plus/Minus Query 451082 AATGCCAAAAACACAGTATATGATGCTAAACGTTTAATTGGCCGTATGTATGATGATGAT 451141 ||| || | ||||| || | |||||| |||||| | |||||| | | || | ||||| | Sbjct 39722 AATCCCCAGAACACTGTCTTTGATGCCAAACGTCTGATTGGCAGGAAGTTTAATGATCCT 39663 Query 451142 ACTGTACAAAAAGAGAAAAAATTCTTTTCTTATGATGTAGTAAATCAAAAAGGAAAGCCC 451201 || ||| ||| | ||| | | ||| | | || | ||| || ||| || ||| Sbjct 39662 GTAGTGCAATCAGATATGAAACTTTGGCCTTTTCAAGTTATCAATGAAGGAGGCAAACCC 39603 Query 451202 TA--TATTCAAGTAAATTATAAAGGTGAAACTAAAACTTTTGCTCCTGAAGAAATTTCAT 451259 | || | || | || ||||| || | ||| |||| |||||| ||||| || | Sbjct 39602 AAGGTAATGGTGTCA--TACAAAGGGGAGAAAAAAGCTTTCTATCCTGAGGAAATCTCTT 39545 Query 451260 CTATGGTTCTTACTAAAATGAAAGAAACAGCAGAACAATATATTGGTTCTCCAGTTACTG 451319 ||||||| || || || ||||| || || || || | | | || || ||||| Sbjct 39544 CTATGGTACTGACAAAGATGAAGGAGACTGCTGAGGCTTTTTTGGGCCACCCTGTTACCA 39485 Query 451320 ATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATG 451379 ||||||| || ||||| || || |||||||||||| | ||||| || || || || |||| Sbjct 39484 ATGCAGTGATCACTGTACCAGCCTATTTCAATGATTCTCAACGCCAGGCCACCAAGGATG 39425 Query 451380 CAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTC 451439 |||| ||||| ||| | ||||| || ||||||| |||||||| ||||| ||||| Sbjct 39424 CAGGTGTGATTGCGGGTCTCAATGTGCTAAGAATTATCAATGAACCCACAGCTGCTGCCA 39365 Query 451440 TAGCATATGGACTAGGAAAATCAAAAGAAACAGAAGaaaaaaaTATTTTAGTATTTGATT 451499 | |||||||| ||| ||| | || | ||| | | | || | |||||| Sbjct 39364 TTGCATATGGCTTAGATAAAGC---AGGTCAGGGAGAGCGACACGTCTTGATCTTTGATC 39308 Query 451500 TTGGTGGAGGAACTCATGATACTTCTGTACTTTCAATTGAAGATGGGGTATTTGAAGTAA 451559 | |||||||| || |||| || | || | || || ||||| | ||||| |||| Sbjct 39307 TAGGTGGAGGCACATTTGATGTGTCCATCCTGACCATAGATGATGGAATTTTTGAGGTAA 39248 Query 451560 AGGCAACCAATGGTGATACTCATCTAGGAGGTGAAGATATTGATAA 451605 |||| || || || || || || ||||| ||||| ||||||| Sbjct 39247 AGGCCACAGCCGGGGACACCCACCTGGGAGGGGAAGACTTTGATAA 39202 >seq138 Length=2487289 Score = 109 bits (120), Expect = 2e-18 Identities = 92/113 (81%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 451313 GTTACTGATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACT 451372 ||||| ||||||| ||||||| || || |||||||||||||| ||||| || ||||| Sbjct 366736 GTTACCCATGCAGTTGTTACTGTACCAGCCTATTTCAATGATGCCCAACGCCAGGCAACC 366677 Query 451373 AAAGATGCAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACC 451425 |||||||||||| ||||||||| || || ||| | | || ||||||||||| Sbjct 366676 AAAGATGCAGGAACTATTGCTGGATTGAACGTTATGAGGATCATTAATGAACC 366624 >seq603 Length=1158281 Score = 84.2 bits (92), Expect = 9e-11 Identities = 79/101 (78%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 451367 GCAACTAAAGATGCAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCT 451426 || ||||| ||||| || || || |||| ||||||| ||||| | ||||||||||| Sbjct 850498 GCCACTAAGGATGCTGGCCAGATATCTGGACTAAATGTGCTTCGGGTAATTAATGAACCC 850439 Query 451427 ACAGCAGCTGCTCTAGCATATGGACTAGGAAAATCAAAAGA 451467 ||||| |||||||| || ||||| |||| ||||| |||| Sbjct 850438 ACAGCTGCTGCTCTGGCCTATGGTCTAGACAAATCGGAAGA 850398 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1973656153160436