Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ailuropoda_20melanoleuca_20[refseq_20GCF_5F000004335.2_202009-12-15]
81,467 sequences; 2,299,509,015 total letters
Query= NC_014637.1
Length=617453
Score E
Sequences producing significant alignments: (Bits) Value
seq3007 170 8e-37
seq138 109 2e-18
seq603 84.2 9e-11
>seq3007
Length=51886
Score = 170 bits (188), Expect = 8e-37
Identities = 355/526 (67%), Gaps = 7/526 (1%)
Strand=Plus/Minus
Query 451082 AATGCCAAAAACACAGTATATGATGCTAAACGTTTAATTGGCCGTATGTATGATGATGAT 451141
||| || | ||||| || | |||||| |||||| | |||||| | | || | ||||| |
Sbjct 39722 AATCCCCAGAACACTGTCTTTGATGCCAAACGTCTGATTGGCAGGAAGTTTAATGATCCT 39663
Query 451142 ACTGTACAAAAAGAGAAAAAATTCTTTTCTTATGATGTAGTAAATCAAAAAGGAAAGCCC 451201
|| ||| ||| | ||| | | ||| | | || | ||| || ||| || |||
Sbjct 39662 GTAGTGCAATCAGATATGAAACTTTGGCCTTTTCAAGTTATCAATGAAGGAGGCAAACCC 39603
Query 451202 TA--TATTCAAGTAAATTATAAAGGTGAAACTAAAACTTTTGCTCCTGAAGAAATTTCAT 451259
| || | || | || ||||| || | ||| |||| |||||| ||||| || |
Sbjct 39602 AAGGTAATGGTGTCA--TACAAAGGGGAGAAAAAAGCTTTCTATCCTGAGGAAATCTCTT 39545
Query 451260 CTATGGTTCTTACTAAAATGAAAGAAACAGCAGAACAATATATTGGTTCTCCAGTTACTG 451319
||||||| || || || ||||| || || || || | | | || || |||||
Sbjct 39544 CTATGGTACTGACAAAGATGAAGGAGACTGCTGAGGCTTTTTTGGGCCACCCTGTTACCA 39485
Query 451320 ATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATG 451379
||||||| || ||||| || || |||||||||||| | ||||| || || || || ||||
Sbjct 39484 ATGCAGTGATCACTGTACCAGCCTATTTCAATGATTCTCAACGCCAGGCCACCAAGGATG 39425
Query 451380 CAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTC 451439
|||| ||||| ||| | ||||| || ||||||| |||||||| ||||| |||||
Sbjct 39424 CAGGTGTGATTGCGGGTCTCAATGTGCTAAGAATTATCAATGAACCCACAGCTGCTGCCA 39365
Query 451440 TAGCATATGGACTAGGAAAATCAAAAGAAACAGAAGaaaaaaaTATTTTAGTATTTGATT 451499
| |||||||| ||| ||| | || | ||| | | | || | ||||||
Sbjct 39364 TTGCATATGGCTTAGATAAAGC---AGGTCAGGGAGAGCGACACGTCTTGATCTTTGATC 39308
Query 451500 TTGGTGGAGGAACTCATGATACTTCTGTACTTTCAATTGAAGATGGGGTATTTGAAGTAA 451559
| |||||||| || |||| || | || | || || ||||| | ||||| ||||
Sbjct 39307 TAGGTGGAGGCACATTTGATGTGTCCATCCTGACCATAGATGATGGAATTTTTGAGGTAA 39248
Query 451560 AGGCAACCAATGGTGATACTCATCTAGGAGGTGAAGATATTGATAA 451605
|||| || || || || || || ||||| ||||| |||||||
Sbjct 39247 AGGCCACAGCCGGGGACACCCACCTGGGAGGGGAAGACTTTGATAA 39202
>seq138
Length=2487289
Score = 109 bits (120), Expect = 2e-18
Identities = 92/113 (81%), Gaps = 0/113 (0%)
Strand=Plus/Minus
Query 451313 GTTACTGATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACT 451372
||||| ||||||| ||||||| || || |||||||||||||| ||||| || |||||
Sbjct 366736 GTTACCCATGCAGTTGTTACTGTACCAGCCTATTTCAATGATGCCCAACGCCAGGCAACC 366677
Query 451373 AAAGATGCAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACC 451425
|||||||||||| ||||||||| || || ||| | | || |||||||||||
Sbjct 366676 AAAGATGCAGGAACTATTGCTGGATTGAACGTTATGAGGATCATTAATGAACC 366624
>seq603
Length=1158281
Score = 84.2 bits (92), Expect = 9e-11
Identities = 79/101 (78%), Gaps = 0/101 (0%)
Strand=Plus/Minus
Query 451367 GCAACTAAAGATGCAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCT 451426
|| ||||| ||||| || || || |||| ||||||| ||||| | |||||||||||
Sbjct 850498 GCCACTAAGGATGCTGGCCAGATATCTGGACTAAATGTGCTTCGGGTAATTAATGAACCC 850439
Query 451427 ACAGCAGCTGCTCTAGCATATGGACTAGGAAAATCAAAAGA 451467
||||| |||||||| || ||||| |||| ||||| ||||
Sbjct 850438 ACAGCTGCTGCTCTGGCCTATGGTCTAGACAAATCGGAAGA 850398
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1973656153160436
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |