Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ailuropoda_20melanoleuca_20[refseq_20GCF_5F000004335.2_202009-12-15] 81,467 sequences; 2,299,509,015 total letters Query= NC_014649.1 Length=1181549 Score E Sequences producing significant alignments: (Bits) Value seq3007 206 2e-47 seq41 145 6e-29 seq138 100 2e-15 seq870 95.1 9e-14 seq2270 89.7 4e-12 >seq3007 Length=51886 Score = 206 bits (228), Expect = 2e-47 Identities = 937/1463 (64%), Gaps = 28/1463 (2%) Strand=Plus/Plus Query 517210 ATTATTAGTAATAGTAATATTCTTGGATTTGTTTGTTGATTTATCAGCGGCAGTCACATT 517269 || ||| || || || || || |||| ||| ||| || || ||| || ||||| Sbjct 38388 ATCATTGGTGATGGTGATCTTATTGGCCTTGCCTGTGCTCTTGTCCATGGCTGTTACATT 38447 Query 517270 AAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACCCCTCTCTGAGC 517329 ||||||||||||||||| | ||||| || || ||||| ||||| || || || | || Sbjct 38448 GAGAATACCATTGGCATCAATGTCAAAGGTCACCTCAATCTGAGGCACTCCCCTGGGTGC 38507 Query 517330 AGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTAGTGAATTTTCG 517389 ||| ||||| || || | ||| ||||| || |||||| || | || Sbjct 38508 AGGAGGGATTCCAGTCAGGTCAAACCGCCCCAGGAGGTTGTTATCTCGGGTCATGGCTCT 38567 Query 517390 TTCACCCTCGAAAATTTGGATAGTAACTACAGTTTGATTATCTGAATAAGTTGTAAATAC 517449 || ||||| | | ||||| || ||| || ||||||||||| || || || | Sbjct 38568 CTCGCCCTCATACACCTGGATCAATACCCCAGGCTGGTTATCTGAATAGGTGGTGAAGA- 38626 Query 517450 TCTGGATTTT-TTACAAGGAATTGTTGTGTTTCTATCAATAATATTGGTCATAATACCAC 517508 |||| | | || || || || | ||| | | || | ||||| | ||| | Sbjct 38627 TCTGCGTCTGCTTGGTGGGGATGGTGGAGTTGCGCTTGATCAGGACTGTCATGACACCTC 38686 Query 517509 CTGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACAATATTTTGAAGTT 517568 | || ||||| || || || || | |||| ||||| | | | | || || | | Sbjct 38687 CAGCCGTTTCCAACCCTAGGGACAAGGGAGCCACATCCAACAAAAGCAGATCCTGTACCT 38746 Query 517569 TTTCATCAGTTTGACCAA-CAAGAATAGCTGCTTGAATAGCAGCACCATATGCAACAGCT 517627 ||||| | | || | ||||| | ||||| || | || || || || || || || Sbjct 38747 TTTCAGACTTGTCCCCCATCAAGA-TGGCTGCCTGCACTGCCGCCCCGTAGGCTACCGCC 38805 Query 517628 TCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAAAAATTTGAAAGAAGTTGT 517687 |||||||| || | | | || || | |||||| || | | || || | Sbjct 38806 TCATCAGGGTTGATGCTCTTGTTGAGATCACGACCATTAAAGTAGTCCTGCAGCAGCC-T 38864 Query 517688 CTTA-CCTTAGGAATACGAGATGATCCTCCAACTAATACAATTTCATGCACCTGTGATTT 517746 || | ||||||| ||||||| || || || ||||| ||||| ||||| | || | || Sbjct 38865 CTGAACCTTAGGGATACGAGTGGAGCCCCCCACTAACACAATGTCATGGATCTTAGCCTT 38924 Query 517747 ATCCAGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCAAGACCCGCTCTAAACAAGTC 517806 ||||| || | |||| | | | || || || ||||| ||| ||||||||| ||| Sbjct 38925 ATCCATCTTGGCATCCCGAAGAGCCTTCTCCACAGGTTCCAGAGTGCCTCTAAACAGGTC 38984 Query 517807 TGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACAT-TATAA-TCAATTCCTTCG 517864 || ||| | ||||| || ||||| || || || | || || ||||| ||||| Sbjct 38985 TGCACACAACTCTTCAAACCGGGCTCTGGT--GATGGATGTGTAGAAGTCAATGCCTTCA 39042 Query 517865 AACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGATAGTGCACGTTTAGCACGT 517924 | | ||||||| ||| | | | || || || || || | | || || | Sbjct 39043 TAAAGTGAATCAATTTCCAAGTTGGCCTGGGTGCTGGACGACAGGGTCCTCTTGGCCCTC 39102 Query 517925 TCACATGCTGTCCTTAGTCTTCGTA-AG---GCTTTTGCTGATTGATTCAAATCTGTTTT 517980 || ||||| || | || | | | || |||| | ||| |||| || | || Sbjct 39103 TCGCATGCGGTGCGCAGCCGCCTCACAGCTCGCTTGTTCTGGCTGATG----TCCTTCTT 39158 Query 517981 ATATTTTCTCTTGAAATCTTCAACACACCATGTTACAAGACGATTATCAAAATCTTCACC 518040 | || |||||||| || || || | | || || | |||||||| ||||| || Sbjct 39159 GTGCTTCCTCTTGAACTCCTCCACGAAGTGGCTCACCAGCCTGTTATCAAAGTCTTCCCC 39218 Query 518041 TCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCATCTTCAAGAGACAA 518100 ||||| | || | || | || || |||| | |||| |||||| || | | || Sbjct 39219 TCCCAGGTGGGTGTCCCCGGCTGTGGCCTTTACCTCAAAAATTCCATCATCTATGGTCAG 39278 Query 518101 AAGAGTTACATCATGGGTTCCACCACCCATATCAAAAATAAGTACAT-TCATT-TCTTTG 518158 | | |||||| || || ||||| | |||||| || | || | || | || || Sbjct 39279 GATGGACACATCAAATGTGCCTCCACCTAGATCAAAGATCAAGACGTGTCGCTCTCCCTG 39338 Query 518159 TCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTC 518218 | || ||| | | ||| ||||| |||| |||||||| || |||||||| |||||||| Sbjct 39339 ACCTGCTTTATCT-AAG-CCATATGCAATGGCAGCAGCTGTGGGTTCATTGATAATTCTT 39396 Query 518219 AAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTA 518278 | ||||| ||||| ||||| |||||||| || ||||| || | ||| ||||| || Sbjct 39397 AGCACATTGAGACCCGCAATCACACCTGCATCCTTGGTGGCCTGGCGTTGAGAATCATTG 39456 Query 518279 AAATATGCAGGAACAGTAATAACGGCATCAGTTACTTCTTTACCAATATAAGCGCTTGCC 518338 ||||| || || ||||| || || |||| || || | || | | |||| || Sbjct 39457 AAATAGGCTGGTACAGTGATCACTGCATTGGTAACAGGGTGGCCCAAAAAAGCCTCAGCA 39516 Query 518339 GTTTGTTTCATTTTACTTAAAATCATTGATGAAATTTGTTCTGG---GGAATATTGCTTG 518395 || | ||||| || | | | ||| || || |||| || || | || || || Sbjct 39517 GTCTCCTTCATCTTTGTCAGTACCATAGAAGAGATTTCCTCAGGATAGAAAGCTTTTTTC 39576 Query 518396 GATTCATTTTGATATGATACTTCAAAATATGGTTTATTACCAACATTAATAACTTTAAAT 518455 | | |||| ||||| || | | ||||| || |||| ||||||| ||| Sbjct 39577 --TCCCCTTTG-TATGACACCATTACCTTGGGTTTGCCTCCTTCATTGATAACTTGAAAA 39633 Query 518456 GGCCAGTATTTCATATCTGATTGAACACTTTGGTCATTAAAATCTCTACCAATTAATCGT 518515 ||||| ||||||||||||||| || | |||||||| | || ||||| | ||| Sbjct 39634 GGCCAAAGTTTCATATCTGATTGCACTACAGGATCATTAAACTTCCTGCCAATCAGACGT 39693 Query 518516 TTTGCATCAAAAATAGTATTGGTTGGATTAATTGCAGCTTGATATTTGGCTGCATCTCCA 518575 || |||||||| | ||| || ||||| || || | || | ||||| ||||| || Sbjct 39694 TTGGCATCAAAGACAGTGTTCTGGGGATTCATGGCCACCTGGTTCTTGGCGGCATCCCCG 39753 Query 518576 ATCAGATGTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTACCTTGATCA 518635 || || | || || || || || | ||||| || || ||||| || || || || Sbjct 39754 ATGAGCCGCTCAGTGTCGGTGAAGGCCACATAGCTGGGGGTGGTGCGGTTGCCCTGGTCG 39813 Query 518636 TTCGCAATAATTTCAACTTTACC 518658 || || || || || || || || Sbjct 39814 TTGGCGATGATCTCCACCTTGCC 39836 >seq41 Length=3861741 Score = 145 bits (160), Expect = 6e-29 Identities = 366/550 (67%), Gaps = 10/550 (2%) Strand=Plus/Plus Query 517610 GCACCATATGCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAA 517669 |||||||| |||||||| |||||||| || | | | ||| |||| ||| || |||||| Sbjct 3280910 GCACCATAAGCAACAGCCTCATCAGGGTTGATGCTCTTATTCAGTTCTTTTCCGTTGAAA 3280969 Query 517670 AAATTTGAAAGAAGTTGTCTTAC-CTTAGGAATACGAGATGATCCTCCAACTAATACAAT 517728 |||| | ||||||| ||| | ||| || ||||| | || || || || | ||||| Sbjct 3280970 AAATCTTGTAGAAGTT-TCTGAATCTTGGGGATACGGGTAGAACCACCCACCAGGACAAT 3281028 Query 517729 TTCATGCACCTGTGATTTATCCAGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCAAG 517788 || || | ||| || || || || || | |||| | |||| || || || || || Sbjct 3281029 ATCGTGGATCTGAGACTTGTCTAGCTTGGCATCCCGAAGGGCTTTCTCTACAGGGTCCAG 3281088 Query 517789 ACCCGCTCTAAACAAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACATT 517848 | | |||| ||| | | | |||||| || || | ||||| || | || Sbjct 3281089 GGTGCCACGGAACAGGTCAGCATTTAATTCTTCAAAGCGGGCACGAGTAATAGAGGTATA 3281148 Query 517849 ATAATCAATTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGATAG 517908 | || |||||||| ||| |||||||| ||||| | | || || ||||| || Sbjct 3281149 GAAGTCGATTCCTTCATACAGAGAATCAATCTCAATACTGGCCTGGGTGCTGGAAGAAAG 3281208 Query 517909 TGCACGTTTAGCACGTTCACATGCTGTCCTTAGTCTTCGTAAGGC--TTTTGCTGATTGA 517966 || ||| |||||||||||||| || || | || | || | || | ||| | || | Sbjct 3281209 TGTACGCTTAGCACGTTCACAAGCAGTACGGAGACGACGAACTGCCCTCTTGTT--TTCA 3281266 Query 517967 TTCAAATCTGTTTTATATTTTCTCTTGAAATCTTCAACACACCATGTT--ACAAGACGAT 518024 | | || | |||| ||| | ||||| ||| ||| | | ||| | || | || | Sbjct 3281267 CTGATGTCCTTCTTATGTTTGCGTTTGAACTCTGCAATAAA--ATGGTTGACCATTCGGT 3281324 Query 518025 TATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTC 518084 ||||||| ||||| || || || | ||| | ||| | || | | | || | ||| | || Sbjct 3281325 TATCAAAGTCTTCTCCACCTAAATGAGTGTCTCCAGCTGTGGATTTGACCTCGAAGATTC 3281384 Query 518085 CATCTTCAAGAGACAAAAGAGTTACATCATGGGTTCCACCACCCATATCAAAAATAAGTA 518144 ||||||||| || | | || |||||| || ||||| || | ||||| || || | Sbjct 3281385 CATCTTCAATAGTAAGGATAGACACATCAAAAGTGCCACCTCCTAAGTCAAAGATCAGCA 3281444 Query 518145 CATTCATTTC 518154 ||||| |||| Sbjct 3281445 CATTCCTTTC 3281454 Score = 107 bits (118), Expect = 1e-17 Identities = 109/142 (77%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 518165 TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACA 518224 ||||| || | ||||| |||| ||||||||||||||| ||||| || ||||| | ||| Sbjct 3281571 TTTTTGTCTAAGCCATAAGCAATAGCAGCAGCAGTTGGCTCATTGATGATTCTAAGTACA 3281630 Query 518225 TTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATAT 518284 || ||||||||||| |||| |||||||| || || || | || || || || || || Sbjct 3281631 TTGAGACCAGCAATAGTTCCAGCATCTTTGGTAGCCTGACGCTGAGAGTCATTGAAGTAG 3281690 Query 518285 GCAGGAACAGTAATAACGGCAT 518306 ||||| || || | ||| |||| Sbjct 3281691 GCAGGTACTGTGACAACTGCAT 3281712 >seq138 Length=2487289 Score = 100 bits (110), Expect = 2e-15 Identities = 211/309 (68%), Gaps = 22/309 (7%) Strand=Plus/Plus Query 517098 TTTCTAATTCATTTTTAGAATCAACAGCAGCTTTTTT--CTTGTTATCTGCTTCTTCAAA 517155 |||| ||||||||| ||| ||||| || ||| || ||| || ||| | || |||| Sbjct 364483 TTTCCAATTCATTTCTAGTATCAAT-GC-GCTCCTTGAGCTTTTTGTCTTCCTCGGCAAA 364540 Query 517156 TTCTTTAGCTTCTCTAATCATTCTCTCAATTTGATCTTCAGAGAATCTTCCGCGATT--- 517212 | | ||| || ||| ||| || ||||||| |||||| | | |||||| Sbjct 364541 CTTCTCAGCATCATTAACCATCCTTTCAATTT---CTTCAGG---TGTCAGGCGATTTTG 364594 Query 517213 ---ATTAGTAATAGTAATATTCTTGGATTTGTT---TGTTGATTTATCAGCGGCAGTCAC 517266 ||| ||||| ||||| || || |||||| ||| ||| || | || ||||| Sbjct 364595 GTCATTCGTAATTGTAATCTTATT---TTTGTTGCCTGTACCTTTGTCTTCAGCTGTCAC 364651 Query 517267 ATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACCCCTCTCTG 517326 |||||| ||||| |||| | ||||| ||||||||||| || |||||||| | | Sbjct 364652 TCGAAGAATGCCATTCACATCTATCTCAAAGGTGACTTCAATCTGTGGGACCCCACGGGG 364711 Query 517327 AGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTAGTGAATTT 517386 |||||| || || || || || ||| ||||||||| | ||| ||||| || | Sbjct 364712 AGCAGGAGGAATTCCAGTCAGATCAAAAGTTCCCAGAAGGTGATTGTCTTTTGTCAGGGG 364771 Query 517387 TCGTTCACC 517395 ||||||||| Sbjct 364772 TCGTTCACC 364780 Score = 87.8 bits (96), Expect = 1e-11 Identities = 83/106 (78%), Gaps = 0/106 (0%) Strand=Plus/Plus Query 518201 GGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCT 518260 ||||||||||| || |||| ||| || | |||||||| ||||||||||||| || || Sbjct 366624 GGTTCATTAATGATCCTCATAACGTTCAATCCAGCAATAGTTCCTGCATCTTTGGTTGCC 366683 Query 518261 TGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCAT 518306 || | ||| | ||| || ||||| || || ||||||| ||| |||| Sbjct 366684 TGGCGTTGGGCATCATTGAAATAGGCTGGTACAGTAACAACTGCAT 366729 >seq870 Length=870195 Score = 95.1 bits (104), Expect = 9e-14 Identities = 102/135 (76%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 635441 TGTACCCTAATTTTGACAGAGGGAGATTCAGCTAAAACATTCGCTATGTCTGGTCTTAAT 635500 ||||| || || |||| || ||||| ||||||||||| || ||| | || || ||| | Sbjct 254902 TGTACACTCATCCTGACTGAAGGAGACTCAGCTAAAACTTTGGCTGTTTCAGGCCTTGGT 254843 Query 635501 GTTATTGGAAGAGATTATTATGGAGTTTTCCCACTTAGAGGAAAACTTTTGAATGTTAGG 635560 || |||| ||||| | || || ||||||||||||||||||||| | | |||||| | Sbjct 254842 GTGGTTGGGAGAGACAAATACGGTGTTTTCCCACTTAGAGGAAAAATACTCAATGTTCGA 254783 Query 635561 GATGCTAGTCCTAAA 635575 || ||| || |||| Sbjct 254782 GAAGCTTCTCATAAA 254768 >seq2270 Length=181692 Score = 89.7 bits (98), Expect = 4e-12 Identities = 96/127 (76%), Gaps = 0/127 (0%) Strand=Plus/Plus Query 366993 TGTAGTAGCCACAATAGCATTTGGTATGGGTATTAATAAACCGGATGTTAGAGTTGTTAT 367052 ||| ||||| || ||||| ||||| ||||| ||||||||| | || || | || || Sbjct 44316 TGTCGTAGCTACCATAGCTTTTGGAATGGGGATTAATAAAGCTGACATTCGCAAAGTCAT 44375 Query 367053 TCATTATGGAGCTCCCAAGAATATTGAAGGTTATTATCAAGAAATTGGTAGAGCAGGTCG 367112 ||||||||| ||||| ||| | || ||| ||||| || || || || ||||| || || Sbjct 44376 TCATTATGGTGCTCCTAAGGAAATGGAATCATATTACCAGGAGATCGGGAGAGCTGGCCG 44435 Query 367113 TGATGGA 367119 ||||||| Sbjct 44436 TGATGGA 44442 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3776779739107702