Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ailuropoda_20melanoleuca_20[refseq_20GCF_5F000004335.2_202009-12-15]
81,467 sequences; 2,299,509,015 total letters
Query= NC_014649.1
Length=1181549
Score E
Sequences producing significant alignments: (Bits) Value
seq3007 206 2e-47
seq41 145 6e-29
seq138 100 2e-15
seq870 95.1 9e-14
seq2270 89.7 4e-12
>seq3007
Length=51886
Score = 206 bits (228), Expect = 2e-47
Identities = 937/1463 (64%), Gaps = 28/1463 (2%)
Strand=Plus/Plus
Query 517210 ATTATTAGTAATAGTAATATTCTTGGATTTGTTTGTTGATTTATCAGCGGCAGTCACATT 517269
|| ||| || || || || || |||| ||| ||| || || ||| || |||||
Sbjct 38388 ATCATTGGTGATGGTGATCTTATTGGCCTTGCCTGTGCTCTTGTCCATGGCTGTTACATT 38447
Query 517270 AAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACCCCTCTCTGAGC 517329
||||||||||||||||| | ||||| || || ||||| ||||| || || || | ||
Sbjct 38448 GAGAATACCATTGGCATCAATGTCAAAGGTCACCTCAATCTGAGGCACTCCCCTGGGTGC 38507
Query 517330 AGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTAGTGAATTTTCG 517389
||| ||||| || || | ||| ||||| || |||||| || | ||
Sbjct 38508 AGGAGGGATTCCAGTCAGGTCAAACCGCCCCAGGAGGTTGTTATCTCGGGTCATGGCTCT 38567
Query 517390 TTCACCCTCGAAAATTTGGATAGTAACTACAGTTTGATTATCTGAATAAGTTGTAAATAC 517449
|| ||||| | | ||||| || ||| || ||||||||||| || || || |
Sbjct 38568 CTCGCCCTCATACACCTGGATCAATACCCCAGGCTGGTTATCTGAATAGGTGGTGAAGA- 38626
Query 517450 TCTGGATTTT-TTACAAGGAATTGTTGTGTTTCTATCAATAATATTGGTCATAATACCAC 517508
|||| | | || || || || | ||| | | || | ||||| | ||| |
Sbjct 38627 TCTGCGTCTGCTTGGTGGGGATGGTGGAGTTGCGCTTGATCAGGACTGTCATGACACCTC 38686
Query 517509 CTGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACAATATTTTGAAGTT 517568
| || ||||| || || || || | |||| ||||| | | | | || || | |
Sbjct 38687 CAGCCGTTTCCAACCCTAGGGACAAGGGAGCCACATCCAACAAAAGCAGATCCTGTACCT 38746
Query 517569 TTTCATCAGTTTGACCAA-CAAGAATAGCTGCTTGAATAGCAGCACCATATGCAACAGCT 517627
||||| | | || | ||||| | ||||| || | || || || || || || ||
Sbjct 38747 TTTCAGACTTGTCCCCCATCAAGA-TGGCTGCCTGCACTGCCGCCCCGTAGGCTACCGCC 38805
Query 517628 TCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAAAAATTTGAAAGAAGTTGT 517687
|||||||| || | | | || || | |||||| || | | || || |
Sbjct 38806 TCATCAGGGTTGATGCTCTTGTTGAGATCACGACCATTAAAGTAGTCCTGCAGCAGCC-T 38864
Query 517688 CTTA-CCTTAGGAATACGAGATGATCCTCCAACTAATACAATTTCATGCACCTGTGATTT 517746
|| | ||||||| ||||||| || || || ||||| ||||| ||||| | || | ||
Sbjct 38865 CTGAACCTTAGGGATACGAGTGGAGCCCCCCACTAACACAATGTCATGGATCTTAGCCTT 38924
Query 517747 ATCCAGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCAAGACCCGCTCTAAACAAGTC 517806
||||| || | |||| | | | || || || ||||| ||| ||||||||| |||
Sbjct 38925 ATCCATCTTGGCATCCCGAAGAGCCTTCTCCACAGGTTCCAGAGTGCCTCTAAACAGGTC 38984
Query 517807 TGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACAT-TATAA-TCAATTCCTTCG 517864
|| ||| | ||||| || ||||| || || || | || || ||||| |||||
Sbjct 38985 TGCACACAACTCTTCAAACCGGGCTCTGGT--GATGGATGTGTAGAAGTCAATGCCTTCA 39042
Query 517865 AACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGATAGTGCACGTTTAGCACGT 517924
| | ||||||| ||| | | | || || || || || | | || || |
Sbjct 39043 TAAAGTGAATCAATTTCCAAGTTGGCCTGGGTGCTGGACGACAGGGTCCTCTTGGCCCTC 39102
Query 517925 TCACATGCTGTCCTTAGTCTTCGTA-AG---GCTTTTGCTGATTGATTCAAATCTGTTTT 517980
|| ||||| || | || | | | || |||| | ||| |||| || | ||
Sbjct 39103 TCGCATGCGGTGCGCAGCCGCCTCACAGCTCGCTTGTTCTGGCTGATG----TCCTTCTT 39158
Query 517981 ATATTTTCTCTTGAAATCTTCAACACACCATGTTACAAGACGATTATCAAAATCTTCACC 518040
| || |||||||| || || || | | || || | |||||||| ||||| ||
Sbjct 39159 GTGCTTCCTCTTGAACTCCTCCACGAAGTGGCTCACCAGCCTGTTATCAAAGTCTTCCCC 39218
Query 518041 TCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCATCTTCAAGAGACAA 518100
||||| | || | || | || || |||| | |||| |||||| || | | ||
Sbjct 39219 TCCCAGGTGGGTGTCCCCGGCTGTGGCCTTTACCTCAAAAATTCCATCATCTATGGTCAG 39278
Query 518101 AAGAGTTACATCATGGGTTCCACCACCCATATCAAAAATAAGTACAT-TCATT-TCTTTG 518158
| | |||||| || || ||||| | |||||| || | || | || | || ||
Sbjct 39279 GATGGACACATCAAATGTGCCTCCACCTAGATCAAAGATCAAGACGTGTCGCTCTCCCTG 39338
Query 518159 TCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTC 518218
| || ||| | | ||| ||||| |||| |||||||| || |||||||| ||||||||
Sbjct 39339 ACCTGCTTTATCT-AAG-CCATATGCAATGGCAGCAGCTGTGGGTTCATTGATAATTCTT 39396
Query 518219 AAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTA 518278
| ||||| ||||| ||||| |||||||| || ||||| || | ||| ||||| ||
Sbjct 39397 AGCACATTGAGACCCGCAATCACACCTGCATCCTTGGTGGCCTGGCGTTGAGAATCATTG 39456
Query 518279 AAATATGCAGGAACAGTAATAACGGCATCAGTTACTTCTTTACCAATATAAGCGCTTGCC 518338
||||| || || ||||| || || |||| || || | || | | |||| ||
Sbjct 39457 AAATAGGCTGGTACAGTGATCACTGCATTGGTAACAGGGTGGCCCAAAAAAGCCTCAGCA 39516
Query 518339 GTTTGTTTCATTTTACTTAAAATCATTGATGAAATTTGTTCTGG---GGAATATTGCTTG 518395
|| | ||||| || | | | ||| || || |||| || || | || || ||
Sbjct 39517 GTCTCCTTCATCTTTGTCAGTACCATAGAAGAGATTTCCTCAGGATAGAAAGCTTTTTTC 39576
Query 518396 GATTCATTTTGATATGATACTTCAAAATATGGTTTATTACCAACATTAATAACTTTAAAT 518455
| | |||| ||||| || | | ||||| || |||| ||||||| |||
Sbjct 39577 --TCCCCTTTG-TATGACACCATTACCTTGGGTTTGCCTCCTTCATTGATAACTTGAAAA 39633
Query 518456 GGCCAGTATTTCATATCTGATTGAACACTTTGGTCATTAAAATCTCTACCAATTAATCGT 518515
||||| ||||||||||||||| || | |||||||| | || ||||| | |||
Sbjct 39634 GGCCAAAGTTTCATATCTGATTGCACTACAGGATCATTAAACTTCCTGCCAATCAGACGT 39693
Query 518516 TTTGCATCAAAAATAGTATTGGTTGGATTAATTGCAGCTTGATATTTGGCTGCATCTCCA 518575
|| |||||||| | ||| || ||||| || || | || | ||||| ||||| ||
Sbjct 39694 TTGGCATCAAAGACAGTGTTCTGGGGATTCATGGCCACCTGGTTCTTGGCGGCATCCCCG 39753
Query 518576 ATCAGATGTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTACCTTGATCA 518635
|| || | || || || || || | ||||| || || ||||| || || || ||
Sbjct 39754 ATGAGCCGCTCAGTGTCGGTGAAGGCCACATAGCTGGGGGTGGTGCGGTTGCCCTGGTCG 39813
Query 518636 TTCGCAATAATTTCAACTTTACC 518658
|| || || || || || || ||
Sbjct 39814 TTGGCGATGATCTCCACCTTGCC 39836
>seq41
Length=3861741
Score = 145 bits (160), Expect = 6e-29
Identities = 366/550 (67%), Gaps = 10/550 (2%)
Strand=Plus/Plus
Query 517610 GCACCATATGCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAA 517669
|||||||| |||||||| |||||||| || | | | ||| |||| ||| || ||||||
Sbjct 3280910 GCACCATAAGCAACAGCCTCATCAGGGTTGATGCTCTTATTCAGTTCTTTTCCGTTGAAA 3280969
Query 517670 AAATTTGAAAGAAGTTGTCTTAC-CTTAGGAATACGAGATGATCCTCCAACTAATACAAT 517728
|||| | ||||||| ||| | ||| || ||||| | || || || || | |||||
Sbjct 3280970 AAATCTTGTAGAAGTT-TCTGAATCTTGGGGATACGGGTAGAACCACCCACCAGGACAAT 3281028
Query 517729 TTCATGCACCTGTGATTTATCCAGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCAAG 517788
|| || | ||| || || || || || | |||| | |||| || || || || ||
Sbjct 3281029 ATCGTGGATCTGAGACTTGTCTAGCTTGGCATCCCGAAGGGCTTTCTCTACAGGGTCCAG 3281088
Query 517789 ACCCGCTCTAAACAAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACATT 517848
| | |||| ||| | | | |||||| || || | ||||| || | ||
Sbjct 3281089 GGTGCCACGGAACAGGTCAGCATTTAATTCTTCAAAGCGGGCACGAGTAATAGAGGTATA 3281148
Query 517849 ATAATCAATTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGATAG 517908
| || |||||||| ||| |||||||| ||||| | | || || ||||| ||
Sbjct 3281149 GAAGTCGATTCCTTCATACAGAGAATCAATCTCAATACTGGCCTGGGTGCTGGAAGAAAG 3281208
Query 517909 TGCACGTTTAGCACGTTCACATGCTGTCCTTAGTCTTCGTAAGGC--TTTTGCTGATTGA 517966
|| ||| |||||||||||||| || || | || | || | || | ||| | || |
Sbjct 3281209 TGTACGCTTAGCACGTTCACAAGCAGTACGGAGACGACGAACTGCCCTCTTGTT--TTCA 3281266
Query 517967 TTCAAATCTGTTTTATATTTTCTCTTGAAATCTTCAACACACCATGTT--ACAAGACGAT 518024
| | || | |||| ||| | ||||| ||| ||| | | ||| | || | || |
Sbjct 3281267 CTGATGTCCTTCTTATGTTTGCGTTTGAACTCTGCAATAAA--ATGGTTGACCATTCGGT 3281324
Query 518025 TATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTC 518084
||||||| ||||| || || || | ||| | ||| | || | | | || | ||| | ||
Sbjct 3281325 TATCAAAGTCTTCTCCACCTAAATGAGTGTCTCCAGCTGTGGATTTGACCTCGAAGATTC 3281384
Query 518085 CATCTTCAAGAGACAAAAGAGTTACATCATGGGTTCCACCACCCATATCAAAAATAAGTA 518144
||||||||| || | | || |||||| || ||||| || | ||||| || || |
Sbjct 3281385 CATCTTCAATAGTAAGGATAGACACATCAAAAGTGCCACCTCCTAAGTCAAAGATCAGCA 3281444
Query 518145 CATTCATTTC 518154
||||| ||||
Sbjct 3281445 CATTCCTTTC 3281454
Score = 107 bits (118), Expect = 1e-17
Identities = 109/142 (77%), Gaps = 0/142 (0%)
Strand=Plus/Plus
Query 518165 TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACA 518224
||||| || | ||||| |||| ||||||||||||||| ||||| || ||||| | |||
Sbjct 3281571 TTTTTGTCTAAGCCATAAGCAATAGCAGCAGCAGTTGGCTCATTGATGATTCTAAGTACA 3281630
Query 518225 TTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATAT 518284
|| ||||||||||| |||| |||||||| || || || | || || || || || ||
Sbjct 3281631 TTGAGACCAGCAATAGTTCCAGCATCTTTGGTAGCCTGACGCTGAGAGTCATTGAAGTAG 3281690
Query 518285 GCAGGAACAGTAATAACGGCAT 518306
||||| || || | ||| ||||
Sbjct 3281691 GCAGGTACTGTGACAACTGCAT 3281712
>seq138
Length=2487289
Score = 100 bits (110), Expect = 2e-15
Identities = 211/309 (68%), Gaps = 22/309 (7%)
Strand=Plus/Plus
Query 517098 TTTCTAATTCATTTTTAGAATCAACAGCAGCTTTTTT--CTTGTTATCTGCTTCTTCAAA 517155
|||| ||||||||| ||| ||||| || ||| || ||| || ||| | || ||||
Sbjct 364483 TTTCCAATTCATTTCTAGTATCAAT-GC-GCTCCTTGAGCTTTTTGTCTTCCTCGGCAAA 364540
Query 517156 TTCTTTAGCTTCTCTAATCATTCTCTCAATTTGATCTTCAGAGAATCTTCCGCGATT--- 517212
| | ||| || ||| ||| || ||||||| |||||| | | ||||||
Sbjct 364541 CTTCTCAGCATCATTAACCATCCTTTCAATTT---CTTCAGG---TGTCAGGCGATTTTG 364594
Query 517213 ---ATTAGTAATAGTAATATTCTTGGATTTGTT---TGTTGATTTATCAGCGGCAGTCAC 517266
||| ||||| ||||| || || |||||| ||| ||| || | || |||||
Sbjct 364595 GTCATTCGTAATTGTAATCTTATT---TTTGTTGCCTGTACCTTTGTCTTCAGCTGTCAC 364651
Query 517267 ATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACCCCTCTCTG 517326
|||||| ||||| |||| | ||||| ||||||||||| || |||||||| | |
Sbjct 364652 TCGAAGAATGCCATTCACATCTATCTCAAAGGTGACTTCAATCTGTGGGACCCCACGGGG 364711
Query 517327 AGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTAGTGAATTT 517386
|||||| || || || || || ||| ||||||||| | ||| ||||| || |
Sbjct 364712 AGCAGGAGGAATTCCAGTCAGATCAAAAGTTCCCAGAAGGTGATTGTCTTTTGTCAGGGG 364771
Query 517387 TCGTTCACC 517395
|||||||||
Sbjct 364772 TCGTTCACC 364780
Score = 87.8 bits (96), Expect = 1e-11
Identities = 83/106 (78%), Gaps = 0/106 (0%)
Strand=Plus/Plus
Query 518201 GGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCT 518260
||||||||||| || |||| ||| || | |||||||| ||||||||||||| || ||
Sbjct 366624 GGTTCATTAATGATCCTCATAACGTTCAATCCAGCAATAGTTCCTGCATCTTTGGTTGCC 366683
Query 518261 TGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCAT 518306
|| | ||| | ||| || ||||| || || ||||||| ||| ||||
Sbjct 366684 TGGCGTTGGGCATCATTGAAATAGGCTGGTACAGTAACAACTGCAT 366729
>seq870
Length=870195
Score = 95.1 bits (104), Expect = 9e-14
Identities = 102/135 (76%), Gaps = 0/135 (0%)
Strand=Plus/Minus
Query 635441 TGTACCCTAATTTTGACAGAGGGAGATTCAGCTAAAACATTCGCTATGTCTGGTCTTAAT 635500
||||| || || |||| || ||||| ||||||||||| || ||| | || || ||| |
Sbjct 254902 TGTACACTCATCCTGACTGAAGGAGACTCAGCTAAAACTTTGGCTGTTTCAGGCCTTGGT 254843
Query 635501 GTTATTGGAAGAGATTATTATGGAGTTTTCCCACTTAGAGGAAAACTTTTGAATGTTAGG 635560
|| |||| ||||| | || || ||||||||||||||||||||| | | |||||| |
Sbjct 254842 GTGGTTGGGAGAGACAAATACGGTGTTTTCCCACTTAGAGGAAAAATACTCAATGTTCGA 254783
Query 635561 GATGCTAGTCCTAAA 635575
|| ||| || ||||
Sbjct 254782 GAAGCTTCTCATAAA 254768
>seq2270
Length=181692
Score = 89.7 bits (98), Expect = 4e-12
Identities = 96/127 (76%), Gaps = 0/127 (0%)
Strand=Plus/Plus
Query 366993 TGTAGTAGCCACAATAGCATTTGGTATGGGTATTAATAAACCGGATGTTAGAGTTGTTAT 367052
||| ||||| || ||||| ||||| ||||| ||||||||| | || || | || ||
Sbjct 44316 TGTCGTAGCTACCATAGCTTTTGGAATGGGGATTAATAAAGCTGACATTCGCAAAGTCAT 44375
Query 367053 TCATTATGGAGCTCCCAAGAATATTGAAGGTTATTATCAAGAAATTGGTAGAGCAGGTCG 367112
||||||||| ||||| ||| | || ||| ||||| || || || || ||||| || ||
Sbjct 44376 TCATTATGGTGCTCCTAAGGAAATGGAATCATATTACCAGGAGATCGGGAGAGCTGGCCG 44435
Query 367113 TGATGGA 367119
|||||||
Sbjct 44436 TGATGGA 44442
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 3776779739107702
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