Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ailuropoda_20melanoleuca_20[refseq_20GCF_5F000004335.2_202009-12-15] 81,467 sequences; 2,299,509,015 total letters Query= NC_015049.1 Length=124335 Score E Sequences producing significant alignments: (Bits) Value seq4614 86.0 5e-12 >seq4614 Length=3760 Score = 86.0 bits (94), Expect = 5e-12 Identities = 158/232 (68%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 349 CCTCATGTTTTACATGACAGGTATATTTATGCTCTTTATGTGCAGGTACTTCTATGGCTG 408 ||||||| | ||||| || || ||| | ||||| | | ||| || | | || | Sbjct 1445 CCTCATGCTGCACATGGCACGTGTATCTCTGCTCCTGTCCGGAAGGCACCACCACAGCCG 1386 Query 409 CCCACTTCTGAAAAGTTCCATCTCCAGCTGGTCTGGTTTCCACCTGCCCCACCCCATCAG 468 |||||||||| || || |||||||| ||||| ||||| ||||| || || | | | Sbjct 1385 CCCACTTCTGGAAGGTCCCATCTCCTGCTGGCCTGGTCTCCACAAGCTCCGTGTCCTGGG 1326 Query 469 TCAGTTGCTCTGCTCCCATGTGCCACGTTATGGTAATGTCCGCAGGATAGAAGCCAGTGG 528 |||| | ||| | || ||||| || | ||| || |||||||| |||||||| || Sbjct 1325 TCAGGTCCTCCCCATCCTGCTGCCAGGTCAGGGTGATCTCCGCAGGGTAGAAGCCCAGGG 1266 Query 529 CCCAACATTTTAGTGTTACTTGACGGTCAGGTGTTGCTTGTCTGGTCACGTG 580 |||| || | || || || | |||||| | | || | ||||||||| Sbjct 1265 CCCAGCACCTCAGCGTGACCTTTTGGTCAGAGATGGGGTGACGGGTCACGTG 1214 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397352285132952