Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ailuropoda_20melanoleuca_20[refseq_20GCF_5F000004335.2_202009-12-15] 81,467 sequences; 2,299,509,015 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq375 107 4e-18 seq17 107 4e-18 seq861 89.7 1e-12 >seq375 Length=1568959 Score = 107 bits (118), Expect = 4e-18 Identities = 113/149 (76%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 194931 AACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTC 194990 ||| ||||| ||||| ||| |||| || ||| ||||||| | |||| | | |||||||| Sbjct 1493369 AACCAGGTGCAGAGTTGACCCTTTCTGGATAATGTAATCAGAAAGACTGATGCCATCTTC 1493310 Query 194991 GAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTG 195050 |||||||| ||| | ||||| || | || ||||| || || ||||||||||| ||||| Sbjct 1493309 CAGCTGCTTGCCTACAAAGATGAGCCTCTGCTGGTCAGGGGGGATGCCTTCTTTATCTTG 1493250 Query 195051 AATTTTTTGCTTGACGTTCTCAATGGTGT 195079 || || ||| || ||| ||||||| Sbjct 1493249 GATCTTAGCCTTCACATTCCTGATGGTGT 1493221 >seq17 Length=4663558 Score = 107 bits (118), Expect = 4e-18 Identities = 154/217 (71%), Gaps = 15/217 (7%) Strand=Plus/Plus Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996 ||| |||||||| || || || || ||||| || | || || | ||||||||| ||||| Sbjct 4172536 GTGCAGAGTGGATTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCTTCCAGCTG 4172595 Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTC---------TTTGTC 195047 || || || ||||| | | || ||||| || || ||||| || |||||| Sbjct 4172596 TTTCCCCGCAAAGATCAACCTCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGTTTGTC 4172655 Query 195048 TTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTT---TCCACTTCAAGGGTAAC 195104 || || || |||||||||||| |||||||| ||| ||||| || ||||| | Sbjct 4172656 CTGGATCTTCGCCTTGACGTTCTCGATGGTGTC---GCTTGGCTCCACCTCCAGGGTGAT 4172712 Query 195105 CGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCATT 195141 ||||| |||||||| || || ||||| | |||||| Sbjct 4172713 GGTCTTACCTGTCAAGGTCTTCACGAAGATCTGCATT 4172749 >seq861 Length=883633 Score = 89.7 bits (98), Expect = 1e-12 Identities = 135/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 194951 CTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACCTGCGAAGA 195010 |||| || || ||||| || | |||| | |||||||| |||||||| ||||| |||| Sbjct 499600 CTTTCTGGATGTTGTAGTCAGAAAGAATGTGGCCATCTTCCAGCTGCTTGCCTGCAAAGA 499541 Query 195011 TAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTGACGTTCT 195070 | || | || ||| | || || ||||||||||| || || | || ||| || |||| Sbjct 499540 TGAGCCTCTGCTGGCCAGGGGGGATGCCTTCTTTATCCTGGGTCTTGGCCTTCACATTCT 499481 Query 195071 CAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGTTTTTACGA 195130 ||||| || ||||| || ||||| | ||||| || |||| || || |||| Sbjct 499480 TCATGGTATCGCTGGGTTCCAACTCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGA 499421 Query 195131 ACACTTGCATTT 195142 | || || |||| Sbjct 499420 AGACCTGTATTT 499409 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1108323527613189