Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ailuropoda_20melanoleuca_20[refseq_20GCF_5F000004335.2_202009-12-15]
81,467 sequences; 2,299,509,015 total letters
Query= NC_015326.1
Length=346754
Score E
Sequences producing significant alignments: (Bits) Value
seq375 107 4e-18
seq17 107 4e-18
seq861 89.7 1e-12
>seq375
Length=1568959
Score = 107 bits (118), Expect = 4e-18
Identities = 113/149 (76%), Gaps = 0/149 (0%)
Strand=Plus/Minus
Query 194931 AACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTC 194990
||| ||||| ||||| ||| |||| || ||| ||||||| | |||| | | ||||||||
Sbjct 1493369 AACCAGGTGCAGAGTTGACCCTTTCTGGATAATGTAATCAGAAAGACTGATGCCATCTTC 1493310
Query 194991 GAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTG 195050
|||||||| ||| | ||||| || | || ||||| || || ||||||||||| |||||
Sbjct 1493309 CAGCTGCTTGCCTACAAAGATGAGCCTCTGCTGGTCAGGGGGGATGCCTTCTTTATCTTG 1493250
Query 195051 AATTTTTTGCTTGACGTTCTCAATGGTGT 195079
|| || ||| || ||| |||||||
Sbjct 1493249 GATCTTAGCCTTCACATTCCTGATGGTGT 1493221
>seq17
Length=4663558
Score = 107 bits (118), Expect = 4e-18
Identities = 154/217 (71%), Gaps = 15/217 (7%)
Strand=Plus/Plus
Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996
||| |||||||| || || || || ||||| || | || || | ||||||||| |||||
Sbjct 4172536 GTGCAGAGTGGATTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCTTCCAGCTG 4172595
Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTC---------TTTGTC 195047
|| || || ||||| | | || ||||| || || ||||| || ||||||
Sbjct 4172596 TTTCCCCGCAAAGATCAACCTCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGTTTGTC 4172655
Query 195048 TTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTT---TCCACTTCAAGGGTAAC 195104
|| || || |||||||||||| |||||||| ||| ||||| || ||||| |
Sbjct 4172656 CTGGATCTTCGCCTTGACGTTCTCGATGGTGTC---GCTTGGCTCCACCTCCAGGGTGAT 4172712
Query 195105 CGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCATT 195141
||||| |||||||| || || ||||| | ||||||
Sbjct 4172713 GGTCTTACCTGTCAAGGTCTTCACGAAGATCTGCATT 4172749
>seq861
Length=883633
Score = 89.7 bits (98), Expect = 1e-12
Identities = 135/192 (70%), Gaps = 0/192 (0%)
Strand=Plus/Minus
Query 194951 CTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACCTGCGAAGA 195010
|||| || || ||||| || | |||| | |||||||| |||||||| ||||| ||||
Sbjct 499600 CTTTCTGGATGTTGTAGTCAGAAAGAATGTGGCCATCTTCCAGCTGCTTGCCTGCAAAGA 499541
Query 195011 TAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTGACGTTCT 195070
| || | || ||| | || || ||||||||||| || || | || ||| || ||||
Sbjct 499540 TGAGCCTCTGCTGGCCAGGGGGGATGCCTTCTTTATCCTGGGTCTTGGCCTTCACATTCT 499481
Query 195071 CAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGTTTTTACGA 195130
||||| || ||||| || ||||| | ||||| || |||| || || ||||
Sbjct 499480 TCATGGTATCGCTGGGTTCCAACTCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGA 499421
Query 195131 ACACTTGCATTT 195142
| || || ||||
Sbjct 499420 AGACCTGTATTT 499409
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1108323527613189
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |