Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ailuropoda_20melanoleuca_20[refseq_20GCF_5F000004335.2_202009-12-15] 81,467 sequences; 2,299,509,015 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq3007 159 3e-33 seq41 129 5e-24 seq1410 96.9 3e-14 seq456 87.8 1e-11 seq138 87.8 1e-11 >seq3007 Length=51886 Score = 159 bits (176), Expect = 3e-33 Identities = 340/500 (68%), Gaps = 16/500 (3%) Strand=Plus/Minus Query 550046 GGTAAAGTTGAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCT 550105 || || || || || || ||||| || || || ||| | || || || ||||| | Sbjct 39836 GGCAAGGTGGAGATCATCGCCAACGACCAGGGCAACCGCACCACCCCCAGCTATGTGGCC 39777 Query 550106 TTCACGGAAACTGAACATTTAGTTGGTGATGCAGCAAAATATCAAG---CCACTGGTAAT 550162 ||||| || ||||| | | | || ||||| || || | || | ||| || ||| Sbjct 39776 TTCACCGACACTGAGCGGCTCATCGGGGATGCCGCCAAGAACCAGGTGGCCA-TG--AAT 39720 Query 550163 CCTACCAATACTATTTTTGATGCTAAACGTTTAATTGGAAGAAGTTTTAATGATTCGACT 550222 || || ||| | |||||||| |||||| | ||||| || | ||||||||| | Sbjct 39719 CCCCAGAACACTGTCTTTGATGCCAAACGTCTGATTGGCAGGAAGTTTAATGATCCTGTA 39660 Query 550223 GTTCAGGCAGATATGAAGCATTGGCCTTTCCAAATTGTTAATGTTTCTGGAAAACCTTA- 550281 || || |||||||||| | ||||||||| ||| || | |||| || ||||| | Sbjct 39659 GTGCAATCAGATATGAAACTTTGGCCTTTTCAAGTTATCAATGAAGGAGGCAAACCCAAG 39600 Query 550282 -TATTGAAGCTACTCATGAAGGATCTGTTAAACAAT-TTTCA--CCAGAACAAATTTCAT 550337 || || | | || |||| | ||| || |||| || || |||| || | Sbjct 39599 GTAATGGTGTCATACA--AAGGG---GAGAAAAAAGCTTTCTATCCTGAGGAAATCTCTT 39545 Query 550338 CTATGGTTTTAATGAAAATGAAACAAACAGCCAGTGCTTTTGTTGGTCAAGAAGTTACGG 550397 ||||||| | | || ||||| | || || |||||| | || || ||||| Sbjct 39544 CTATGGTACTGACAAAGATGAAGGAGACTGCTGAGGCTTTTTTGGGCCACCCTGTTACCA 39485 Query 550398 ATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATG 550457 ||||||| || ||||||||||| ||||| ||||| || ||||| || || || || |||| Sbjct 39484 ATGCAGTGATCACTGTACCAGCCTATTTCAATGATTCTCAACGCCAGGCCACCAAGGATG 39425 Query 550458 CTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCAC 550517 | || ||||| || || ||||| || | |||||||||||||| || |||||||| Sbjct 39424 CAGGTGTGATTGCGGGTCTCAATGTGCTAAGAATTATCAATGAACCCACAGCTGCTGCCA 39365 Query 550518 TTGCATATGGACTTGATAAA 550537 |||||||||| | |||||| Sbjct 39364 TTGCATATGGCTTAGATAAA 39345 >seq41 Length=3861741 Score = 129 bits (142), Expect = 5e-24 Identities = 123/155 (79%), Gaps = 3/155 (2%) Strand=Plus/Minus Query 550374 CTTTTGTTGGTCAAGAA-GTTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGAC 550432 |||||||| || ||| ||||| ||||||| | || ||||| || || || |||||| Sbjct 3281735 CTTTTGTT--TCTAGACTGTTACCAATGCAGTTGTCACAGTACCTGCCTACTTCAATGAC 3281678 Query 550433 TCACAACGTCAAGCTACTAAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATT 550492 || || ||||| ||||| |||||||||||| ||||||||| || ||||| ||| | || Sbjct 3281677 TCTCAGCGTCAGGCTACCAAAGATGCTGGAACTATTGCTGGTCTCAATGTACTTAGAATC 3281618 Query 550493 ATCAATGAACCTACTGCTGCTGCACTTGCATATGG 550527 |||||||| || ||||||||||| |||| ||||| Sbjct 3281617 ATCAATGAGCCAACTGCTGCTGCTATTGCTTATGG 3281583 Score = 107 bits (118), Expect = 2e-17 Identities = 116/154 (75%), Gaps = 0/154 (0%) Strand=Plus/Minus Query 549998 GGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTAAAGTTGAA 550057 || || ||| | || ||||| || |||||| ||||| | || | || ||||| ||| Sbjct 3282658 GGCATTGATCTTGGCACCACCTACTCTTGTGTGGGTGTCTTCCAGCACGGGAAAGTGGAA 3282599 Query 550058 ATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCACGGAAACT 550117 || |||||||||||||| || ||| |||| || ||| |||||| ||||||| || ||| Sbjct 3282598 ATAATTGCCAATGATCAGGGAAACCGAACCACCCCAAGTTATGTCGCTTTCACTGACACT 3282539 Query 550118 GAACATTTAGTTGGTGATGCAGCAAAATATCAAG 550151 |||| || | |||||||| ||||| |||||| Sbjct 3282538 GAACGATTGATCGGTGATGCCGCAAAGAATCAAG 3282505 Score = 100 bits (110), Expect = 2e-15 Identities = 297/454 (65%), Gaps = 8/454 (2%) Strand=Plus/Minus Query 551789 TGGAGATTCTCATCTTGGTGGCGAAGATTTTGATAATAGACTGGT--ATCATGGTGTGTT 551846 |||||| ||||| | ||||| ||||| |||||||| || |||| | ||| | | || Sbjct 3281359 TGGAGACACTCATTTAGGTGGAGAAGACTTTGATAACCGAATGGTCAACCAT--TTTATT 3281302 Query 551847 GAAGATTTTAAACGAAAAAACAA--AGTTGATCTATCTACATCTGCCAAAGCTCTTCGTC 551904 | ||| || ||||| ||| | || || ||| | | | | | || |||||| Sbjct 3281301 GCAGAGTTCAAACGCAAACATAAGAAGGACATCAGTGAAAACAAG--AGGGCAGTTCGTC 3281244 Query 551905 GTCTAAGAACTGCTTGCGAAAGAGCCAAACGAGCTCTTTCATCTGGTACTCAAACCACTA 551964 |||| | |||||||| ||| | || || || | ||||| || | || || ||| || Sbjct 3281243 GTCTCCGTACTGCTTGTGAACGTGCTAAGCGTACACTTTCTTCCAGCACCCAGGCCAGTA 3281184 Query 551965 TTGAAGTAGATTCATTATTTGAGGGAATTGATTATAATACGCCTATTTCGAGGGCCAAAT 552024 |||| | ||||| | | ||| ||||| || | |||| ||||| | | ||| | Sbjct 3281183 TTGAGATTGATTCTCTGTATGAAGGAATCGACTTCTATACCTCTATTACTCGTGCCCGCT 3281124 Query 552025 TTGAAGATATTTGTTCTGATCTCTTTAGAAAAACAATTGAACCAGTAGAACAAGTTTTAA 552084 ||||||| | | |||| || || | || | || || ||||| ||| | Sbjct 3281123 TTGAAGAATTAAATGCTGACCTGTTCCGTGGCACCCTGGACCCTGTAGAGAAAGCCCTTC 3281064 Query 552085 GAGATTCAAAGATTGATAAATCCAAAGTACATGAAATTGTGCTTGTTGGTGGATCTACAA 552144 | ||| | ||| | || || || | | || || ||||| || || ||||| ||||| Sbjct 3281063 GGGATGCCAAGCTAGACAAGTCTCAGATCCACGATATTGTCCTGGTGGGTGGTTCTACCC 3281004 Query 552145 GAATTCCTAAAATTCGCGAAATGTTAAGTTCTTATTTCAATGGTAAAAAATTAAATGAAA 552204 | || || || |||| || | || || |||||| || ||| || | ||| | | Sbjct 3281003 GTATCCCCAAGATTCAGAAACTTCTACAAGATTTTTTCAACGGAAAAGAACTGAATAAGA 3280944 Query 552205 GTGTTAATCCAGATGAGGCTGTTGCCTATGGTGC 552238 | | || || |||||||||||||| |||||||| Sbjct 3280943 GCATCAACCCTGATGAGGCTGTTGCTTATGGTGC 3280910 >seq1410 Length=511009 Score = 96.9 bits (106), Expect = 3e-14 Identities = 322/487 (66%), Gaps = 27/487 (6%) Strand=Plus/Minus Query 550049 AAAGTTGAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTC 550108 ||||| |||| |||||||||||| | || ||| |||| || ||| |||||| || || Sbjct 91149 AAAGTGAAAATAATTGCCAATGATGAGGGAAACTGAACCACCCCAAGTTATGTCTCCTTT 91090 Query 550109 ACGGAAACTGAACATTTAGTTGGTGATGCAGCAAAATATCAAG--CCACTGGTAATCCTA 550166 ||||||||||| || | ||||| | ||||| | |||| || || || || | Sbjct 91089 ---GAAACTGAACACTTGATCAGTGATACTGCAAAGAACCAAGTTGCAATG--AACCCCA 91035 Query 550167 CCAATACTATTTTTGATGCTAAACGTTTAATTGGAAGAAGTTTTAATGATTCGACTGTTC 550226 |||| || |||||| || ||| | | | |||| | || ||| | || | ||| | Sbjct 91034 CCAACACAGGTTTTGAGGCCAAATGCCTGAATGGATGTAGATTTGACAATGCTGTTGTCC 90975 Query 550227 AGGCAGATATGAAGCATTGGCCTTTCCAAATTGTTAATGTTTCTGGAAAACCTTATATTG 550286 | | |||||||||| ||||||||| || | ||| | || | ||| | ||| | || Sbjct 90974 AATCTGATATGAAGCTTTGGCCTTT-CATAGTGTGAGTGGTGATGGCAGACCCAAAGTTT 90916 Query 550287 AAGCTACTCATGAAGGATCTGTTAAACAA-----TTTTCACCAGAACAAATTTCATCTAT 550341 ||| || |||| | |||||| || | |||| | | || |||| Sbjct 90915 AAG-TAGAATACAAGG----GAGAAACAAAAAGTTTCTATCCAG---AGGTGTCCCCTAT 90864 Query 550342 GGTTTTAATGAAAATGAAACAAA-CAGCCAGTGCTTTTGTTGGTCAAGA-AGTTACGGAT 550399 ||||| | || || || ||| || || |||| |||| |||| ||| || Sbjct 90863 TGTTTTTACAAAGATAAAGGAAATCACAGAG-GCTTACCTTGG-GAAGACTACTACCAAT 90806 Query 550400 GCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCT 550459 | ||| | | ||||| || || ||| ||||||| || | | |||| ||||||||| Sbjct 90805 GTAGTTGTCATAGTACCTGCTTACTTT-ATGACTCTCAGCATTGGCCTACCAAAGATGCT 90747 Query 550460 GGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTT 550519 ||| |||||| | || ||||| ||| | || | |||||| || | ||||||| | || Sbjct 90746 GGAATTATTGC-AGTCTAAATGTACTTAGAATCACCAATGAGCCAAATGCTGCTTCTGTT 90688 Query 550520 GCATATG 550526 || |||| Sbjct 90687 GCTTATG 90681 >seq456 Length=1409724 Score = 87.8 bits (96), Expect = 1e-11 Identities = 157/225 (70%), Gaps = 6/225 (3%) Strand=Plus/Minus Query 563253 CCTGAGACGGAGTACAAGATGAAGGGT--ACTTTCTTTGGTAATATTGTAATCAGCTAGA 563310 ||| |||||||| || || || || || ||| | | ||| || |||||||||| ||| Sbjct 1114316 CCTCAGACGGAGAACCAGGTGGAGAGTCGACTCTTTCTGG--ATGTTGTAATCAGAAAGA 1114259 Query 563311 GTTCTTGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATT 563370 || | |||||| || || || || ||||| || || || ||||| ||||| || || Sbjct 1114258 GTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGGGGGATG 1114199 Query 563371 CCTTCTTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACA-TTC 563429 || ||||||||||| || || || || ||| || || ||| || | | || || Sbjct 1114198 CCCTCTTTATCTTGGATCTTGGCCTTCACATTCTCGATGGTGTCACTG-GGCTCCACCTC 1114140 Query 563430 GAGAGTAACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCAT 563474 || || | || || ||||| || || || ||||| || ||||| Sbjct 1114139 CAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 1114095 >seq138 Length=2487289 Score = 87.8 bits (96), Expect = 1e-11 Identities = 87/113 (77%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 550391 GTTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACT 550450 ||||| ||||||| | ||||||||||| ||||| ||||| | ||||| || || || Sbjct 366736 GTTACCCATGCAGTTGTTACTGTACCAGCCTATTTCAATGATGCCCAACGCCAGGCAACC 366677 Query 550451 AAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACC 550503 |||||||| ||| |||||||||| | || ||| | | || || |||||||| Sbjct 366676 AAAGATGCAGGAACTATTGCTGGATTGAACGTTATGAGGATCATTAATGAACC 366624 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4024987657623830