Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ailuropoda_20melanoleuca_20[refseq_20GCF_5F000004335.2_202009-12-15]
81,467 sequences; 2,299,509,015 total letters
Query= NC_016072.1
Length=1259197
Score E
Sequences producing significant alignments: (Bits) Value
seq3007 159 3e-33
seq41 129 5e-24
seq1410 96.9 3e-14
seq456 87.8 1e-11
seq138 87.8 1e-11
>seq3007
Length=51886
Score = 159 bits (176), Expect = 3e-33
Identities = 340/500 (68%), Gaps = 16/500 (3%)
Strand=Plus/Minus
Query 550046 GGTAAAGTTGAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCT 550105
|| || || || || || ||||| || || || ||| | || || || ||||| |
Sbjct 39836 GGCAAGGTGGAGATCATCGCCAACGACCAGGGCAACCGCACCACCCCCAGCTATGTGGCC 39777
Query 550106 TTCACGGAAACTGAACATTTAGTTGGTGATGCAGCAAAATATCAAG---CCACTGGTAAT 550162
||||| || ||||| | | | || ||||| || || | || | ||| || |||
Sbjct 39776 TTCACCGACACTGAGCGGCTCATCGGGGATGCCGCCAAGAACCAGGTGGCCA-TG--AAT 39720
Query 550163 CCTACCAATACTATTTTTGATGCTAAACGTTTAATTGGAAGAAGTTTTAATGATTCGACT 550222
|| || ||| | |||||||| |||||| | ||||| || | ||||||||| |
Sbjct 39719 CCCCAGAACACTGTCTTTGATGCCAAACGTCTGATTGGCAGGAAGTTTAATGATCCTGTA 39660
Query 550223 GTTCAGGCAGATATGAAGCATTGGCCTTTCCAAATTGTTAATGTTTCTGGAAAACCTTA- 550281
|| || |||||||||| | ||||||||| ||| || | |||| || ||||| |
Sbjct 39659 GTGCAATCAGATATGAAACTTTGGCCTTTTCAAGTTATCAATGAAGGAGGCAAACCCAAG 39600
Query 550282 -TATTGAAGCTACTCATGAAGGATCTGTTAAACAAT-TTTCA--CCAGAACAAATTTCAT 550337
|| || | | || |||| | ||| || |||| || || |||| || |
Sbjct 39599 GTAATGGTGTCATACA--AAGGG---GAGAAAAAAGCTTTCTATCCTGAGGAAATCTCTT 39545
Query 550338 CTATGGTTTTAATGAAAATGAAACAAACAGCCAGTGCTTTTGTTGGTCAAGAAGTTACGG 550397
||||||| | | || ||||| | || || |||||| | || || |||||
Sbjct 39544 CTATGGTACTGACAAAGATGAAGGAGACTGCTGAGGCTTTTTTGGGCCACCCTGTTACCA 39485
Query 550398 ATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATG 550457
||||||| || ||||||||||| ||||| ||||| || ||||| || || || || ||||
Sbjct 39484 ATGCAGTGATCACTGTACCAGCCTATTTCAATGATTCTCAACGCCAGGCCACCAAGGATG 39425
Query 550458 CTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCAC 550517
| || ||||| || || ||||| || | |||||||||||||| || ||||||||
Sbjct 39424 CAGGTGTGATTGCGGGTCTCAATGTGCTAAGAATTATCAATGAACCCACAGCTGCTGCCA 39365
Query 550518 TTGCATATGGACTTGATAAA 550537
|||||||||| | ||||||
Sbjct 39364 TTGCATATGGCTTAGATAAA 39345
>seq41
Length=3861741
Score = 129 bits (142), Expect = 5e-24
Identities = 123/155 (79%), Gaps = 3/155 (2%)
Strand=Plus/Minus
Query 550374 CTTTTGTTGGTCAAGAA-GTTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGAC 550432
|||||||| || ||| ||||| ||||||| | || ||||| || || || ||||||
Sbjct 3281735 CTTTTGTT--TCTAGACTGTTACCAATGCAGTTGTCACAGTACCTGCCTACTTCAATGAC 3281678
Query 550433 TCACAACGTCAAGCTACTAAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATT 550492
|| || ||||| ||||| |||||||||||| ||||||||| || ||||| ||| | ||
Sbjct 3281677 TCTCAGCGTCAGGCTACCAAAGATGCTGGAACTATTGCTGGTCTCAATGTACTTAGAATC 3281618
Query 550493 ATCAATGAACCTACTGCTGCTGCACTTGCATATGG 550527
|||||||| || ||||||||||| |||| |||||
Sbjct 3281617 ATCAATGAGCCAACTGCTGCTGCTATTGCTTATGG 3281583
Score = 107 bits (118), Expect = 2e-17
Identities = 116/154 (75%), Gaps = 0/154 (0%)
Strand=Plus/Minus
Query 549998 GGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTAAAGTTGAA 550057
|| || ||| | || ||||| || |||||| ||||| | || | || ||||| |||
Sbjct 3282658 GGCATTGATCTTGGCACCACCTACTCTTGTGTGGGTGTCTTCCAGCACGGGAAAGTGGAA 3282599
Query 550058 ATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCACGGAAACT 550117
|| |||||||||||||| || ||| |||| || ||| |||||| ||||||| || |||
Sbjct 3282598 ATAATTGCCAATGATCAGGGAAACCGAACCACCCCAAGTTATGTCGCTTTCACTGACACT 3282539
Query 550118 GAACATTTAGTTGGTGATGCAGCAAAATATCAAG 550151
|||| || | |||||||| ||||| ||||||
Sbjct 3282538 GAACGATTGATCGGTGATGCCGCAAAGAATCAAG 3282505
Score = 100 bits (110), Expect = 2e-15
Identities = 297/454 (65%), Gaps = 8/454 (2%)
Strand=Plus/Minus
Query 551789 TGGAGATTCTCATCTTGGTGGCGAAGATTTTGATAATAGACTGGT--ATCATGGTGTGTT 551846
|||||| ||||| | ||||| ||||| |||||||| || |||| | ||| | | ||
Sbjct 3281359 TGGAGACACTCATTTAGGTGGAGAAGACTTTGATAACCGAATGGTCAACCAT--TTTATT 3281302
Query 551847 GAAGATTTTAAACGAAAAAACAA--AGTTGATCTATCTACATCTGCCAAAGCTCTTCGTC 551904
| ||| || ||||| ||| | || || ||| | | | | | || ||||||
Sbjct 3281301 GCAGAGTTCAAACGCAAACATAAGAAGGACATCAGTGAAAACAAG--AGGGCAGTTCGTC 3281244
Query 551905 GTCTAAGAACTGCTTGCGAAAGAGCCAAACGAGCTCTTTCATCTGGTACTCAAACCACTA 551964
|||| | |||||||| ||| | || || || | ||||| || | || || ||| ||
Sbjct 3281243 GTCTCCGTACTGCTTGTGAACGTGCTAAGCGTACACTTTCTTCCAGCACCCAGGCCAGTA 3281184
Query 551965 TTGAAGTAGATTCATTATTTGAGGGAATTGATTATAATACGCCTATTTCGAGGGCCAAAT 552024
|||| | ||||| | | ||| ||||| || | |||| ||||| | | ||| |
Sbjct 3281183 TTGAGATTGATTCTCTGTATGAAGGAATCGACTTCTATACCTCTATTACTCGTGCCCGCT 3281124
Query 552025 TTGAAGATATTTGTTCTGATCTCTTTAGAAAAACAATTGAACCAGTAGAACAAGTTTTAA 552084
||||||| | | |||| || || | || | || || ||||| ||| |
Sbjct 3281123 TTGAAGAATTAAATGCTGACCTGTTCCGTGGCACCCTGGACCCTGTAGAGAAAGCCCTTC 3281064
Query 552085 GAGATTCAAAGATTGATAAATCCAAAGTACATGAAATTGTGCTTGTTGGTGGATCTACAA 552144
| ||| | ||| | || || || | | || || ||||| || || ||||| |||||
Sbjct 3281063 GGGATGCCAAGCTAGACAAGTCTCAGATCCACGATATTGTCCTGGTGGGTGGTTCTACCC 3281004
Query 552145 GAATTCCTAAAATTCGCGAAATGTTAAGTTCTTATTTCAATGGTAAAAAATTAAATGAAA 552204
| || || || |||| || | || || |||||| || ||| || | ||| | |
Sbjct 3281003 GTATCCCCAAGATTCAGAAACTTCTACAAGATTTTTTCAACGGAAAAGAACTGAATAAGA 3280944
Query 552205 GTGTTAATCCAGATGAGGCTGTTGCCTATGGTGC 552238
| | || || |||||||||||||| ||||||||
Sbjct 3280943 GCATCAACCCTGATGAGGCTGTTGCTTATGGTGC 3280910
>seq1410
Length=511009
Score = 96.9 bits (106), Expect = 3e-14
Identities = 322/487 (66%), Gaps = 27/487 (6%)
Strand=Plus/Minus
Query 550049 AAAGTTGAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTC 550108
||||| |||| |||||||||||| | || ||| |||| || ||| |||||| || ||
Sbjct 91149 AAAGTGAAAATAATTGCCAATGATGAGGGAAACTGAACCACCCCAAGTTATGTCTCCTTT 91090
Query 550109 ACGGAAACTGAACATTTAGTTGGTGATGCAGCAAAATATCAAG--CCACTGGTAATCCTA 550166
||||||||||| || | ||||| | ||||| | |||| || || || || |
Sbjct 91089 ---GAAACTGAACACTTGATCAGTGATACTGCAAAGAACCAAGTTGCAATG--AACCCCA 91035
Query 550167 CCAATACTATTTTTGATGCTAAACGTTTAATTGGAAGAAGTTTTAATGATTCGACTGTTC 550226
|||| || |||||| || ||| | | | |||| | || ||| | || | ||| |
Sbjct 91034 CCAACACAGGTTTTGAGGCCAAATGCCTGAATGGATGTAGATTTGACAATGCTGTTGTCC 90975
Query 550227 AGGCAGATATGAAGCATTGGCCTTTCCAAATTGTTAATGTTTCTGGAAAACCTTATATTG 550286
| | |||||||||| ||||||||| || | ||| | || | ||| | ||| | ||
Sbjct 90974 AATCTGATATGAAGCTTTGGCCTTT-CATAGTGTGAGTGGTGATGGCAGACCCAAAGTTT 90916
Query 550287 AAGCTACTCATGAAGGATCTGTTAAACAA-----TTTTCACCAGAACAAATTTCATCTAT 550341
||| || |||| | |||||| || | |||| | | || ||||
Sbjct 90915 AAG-TAGAATACAAGG----GAGAAACAAAAAGTTTCTATCCAG---AGGTGTCCCCTAT 90864
Query 550342 GGTTTTAATGAAAATGAAACAAA-CAGCCAGTGCTTTTGTTGGTCAAGA-AGTTACGGAT 550399
||||| | || || || ||| || || |||| |||| |||| ||| ||
Sbjct 90863 TGTTTTTACAAAGATAAAGGAAATCACAGAG-GCTTACCTTGG-GAAGACTACTACCAAT 90806
Query 550400 GCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCT 550459
| ||| | | ||||| || || ||| ||||||| || | | |||| |||||||||
Sbjct 90805 GTAGTTGTCATAGTACCTGCTTACTTT-ATGACTCTCAGCATTGGCCTACCAAAGATGCT 90747
Query 550460 GGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTT 550519
||| |||||| | || ||||| ||| | || | |||||| || | ||||||| | ||
Sbjct 90746 GGAATTATTGC-AGTCTAAATGTACTTAGAATCACCAATGAGCCAAATGCTGCTTCTGTT 90688
Query 550520 GCATATG 550526
|| ||||
Sbjct 90687 GCTTATG 90681
>seq456
Length=1409724
Score = 87.8 bits (96), Expect = 1e-11
Identities = 157/225 (70%), Gaps = 6/225 (3%)
Strand=Plus/Minus
Query 563253 CCTGAGACGGAGTACAAGATGAAGGGT--ACTTTCTTTGGTAATATTGTAATCAGCTAGA 563310
||| |||||||| || || || || || ||| | | ||| || |||||||||| |||
Sbjct 1114316 CCTCAGACGGAGAACCAGGTGGAGAGTCGACTCTTTCTGG--ATGTTGTAATCAGAAAGA 1114259
Query 563311 GTTCTTGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATT 563370
|| | |||||| || || || || ||||| || || || ||||| ||||| || ||
Sbjct 1114258 GTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGGGGGATG 1114199
Query 563371 CCTTCTTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACA-TTC 563429
|| ||||||||||| || || || || ||| || || ||| || | | || ||
Sbjct 1114198 CCCTCTTTATCTTGGATCTTGGCCTTCACATTCTCGATGGTGTCACTG-GGCTCCACCTC 1114140
Query 563430 GAGAGTAACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCAT 563474
|| || | || || ||||| || || || ||||| || |||||
Sbjct 1114139 CAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 1114095
>seq138
Length=2487289
Score = 87.8 bits (96), Expect = 1e-11
Identities = 87/113 (77%), Gaps = 0/113 (0%)
Strand=Plus/Minus
Query 550391 GTTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACT 550450
||||| ||||||| | ||||||||||| ||||| ||||| | ||||| || || ||
Sbjct 366736 GTTACCCATGCAGTTGTTACTGTACCAGCCTATTTCAATGATGCCCAACGCCAGGCAACC 366677
Query 550451 AAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACC 550503
|||||||| ||| |||||||||| | || ||| | | || || ||||||||
Sbjct 366676 AAAGATGCAGGAACTATTGCTGGATTGAACGTTATGAGGATCATTAATGAACC 366624
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 4024987657623830
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |