Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ailuropoda_20melanoleuca_20[refseq_20GCF_5F000004335.2_202009-12-15] 81,467 sequences; 2,299,509,015 total letters Query= NC_016448.1 Length=196691 Score E Sequences producing significant alignments: (Bits) Value seq1523 105 8e-18 >seq1523 Length=452193 Score = 105 bits (116), Expect = 8e-18 Identities = 160/227 (70%), Gaps = 3/227 (1%) Strand=Plus/Plus Query 2228 CAATCACAGTCAACTGTCTCAGAATCGGATCTGCGAGATCCATCTGACCTGTTCTGTCGA 2287 |||||||| | |||||| ||| | ||| ||| ||||| || |||||||| ||||| || Sbjct 209271 CAATCACACTAGGCTGTCTGAGATTGGGACCTGTGAGATACACCTGACCTGCTCTGTGGA 209330 Query 2288 GGATCCCAATGACAACATCTCCTTCAAATGGGAGGCCTTGGGCAAGACGCTTCTACGCGA 2347 | || | ||||||| | | | | | ||| | | | || || || || || Sbjct 209331 GAATTCAAATGACAGCTTGT---TAAGGTGGCACGTGGTAGGAAACACATCCATAAATGA 209387 Query 2348 GCCCAACCTCACGACCTCCTGGGACCCCAGGAACAGCAGTGAGCAGAACTACACGTGCAT 2407 | |||||||| |||||||||||||||||| |||||| ||||| ||||| ||||| Sbjct 209388 AGCAAACCTCACTGTCTCCTGGGACCCCAGGAATTCCAGTGACCAGAAGTACACCTGCAT 209447 Query 2408 CGCCGAAAACGCTGTGAGCAATCTCTCTTTCACGGTCTCGGCCCAGA 2454 || || || |||| ||||| | || ||| | ||||| |||||| Sbjct 209448 AGCTGAGAATCCTGTCAGCAACATATCCTTCTCTGTCTCCACCCAGA 209494 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628642377319320