Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ailuropoda_20melanoleuca_20[refseq_20GCF_5F000004335.2_202009-12-15]
81,467 sequences; 2,299,509,015 total letters
Query= NC_016924.1
Length=185139
Score E
Sequences producing significant alignments: (Bits) Value
seq590 111 2e-19
seq497 98.7 1e-15
>seq590
Length=1172511
Score = 111 bits (122), Expect = 2e-19
Identities = 99/124 (80%), Gaps = 0/124 (0%)
Strand=Plus/Minus
Query 37198 CTTCATCTCTACTTATCAATTCATTAGAAAAGGTTAATCCTGGCATTAAACCTCtttttt 37257
|||||||||| || || | |||||| ||||| || | ||| ||||| | ||||||||| |
Sbjct 827238 CTTCATCTCTGCTGATGAGTTCATTGGAAAACGTGAGTCCAGGCATAAGACCTCTTTTCT 827179
Query 37258 tAATCCAAAATATTGCTGCAAAAGATCCAGAAAAGAAAATACCTTCAACTGCTGCAAATG 37317
| | ||| ||||| || ||||||||||| || |||||||| ||||| || || ||||| |
Sbjct 827178 TTAGCCAGAATATAGCAGCAAAAGATCCCGAGAAGAAAATCCCTTCTACAGCAGCAAAAG 827119
Query 37318 CTAC 37321
| ||
Sbjct 827118 CCAC 827115
Score = 82.4 bits (90), Expect = 9e-11
Identities = 65/78 (83%), Gaps = 0/78 (0%)
Strand=Plus/Minus
Query 36887 TTGATATTCTCCAACTCGTCTTTCGAAAAAATTTGTCTTTCCTTCTAGTGATATATTTTC 36946
|||||| ||| |||||||| | || || |||||||| || ||||||| || || |||||
Sbjct 851827 TTGATACTCTGCAACTCGTTTCTCAAAGAAATTTGTTTTCCCTTCTAACGAAATGTTTTC 851768
Query 36947 CATAAAATCAAATGGATT 36964
|||||||||||| |||||
Sbjct 851767 CATAAAATCAAAGGGATT 851750
>seq497
Length=1337528
Score = 98.7 bits (108), Expect = 1e-15
Identities = 96/124 (77%), Gaps = 0/124 (0%)
Strand=Plus/Minus
Query 37200 TCATCTCTACTTATCAATTCATTAGAAAAGGTTAATCCTGGCATTAAACCTCtttttttA 37259
|||||||| || || | |||||| ||||| || | || ||||| | || | ||| ||
Sbjct 317825 TCATCTCTGCTAATAAGTTCATTGGAAAACGTGAGGCCAGGCATCAGGCCACGTTTCTTG 317766
Query 37260 ATCCAAAATATTGCTGCAAAAGATCCAGAAAAGAAAATACCTTCAACTGCTGCAAATGCT 37319
| ||| ||||||| ||||||||| ||||||||||| || ||||| || || ||||| ||
Sbjct 317765 AGCCAGAATATTGATGCAAAAGAACCAGAAAAGAAGATTCCTTCCACAGCGGCAAAGGCC 317706
Query 37320 ACAA 37323
||||
Sbjct 317705 ACAA 317702
Score = 82.4 bits (90), Expect = 9e-11
Identities = 76/94 (81%), Gaps = 2/94 (2%)
Strand=Plus/Minus
Query 36872 CATAACTCCCATTTTTTGATATTCTCCAACTCGTCTT-TCGAAAAAATTTGTCTTTCCTT 36930
||| |||||||| | ||||| || || |||| |||| || || || || ||||| ||||
Sbjct 319005 CATCACTCCCATCCTCTGATACTCGCCTACTC-TCTTCTCAAAGAAGTTAGTCTTCCCTT 318947
Query 36931 CTAGTGATATATTTTCCATAAAATCAAATGGATT 36964
| ||||| ||||| |||||||| |||||||||||
Sbjct 318946 CCAGTGAAATATTCTCCATAAAGTCAAATGGATT 318913
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 591713621590680
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |