Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ailuropoda_20melanoleuca_20[refseq_20GCF_5F000004335.2_202009-12-15] 81,467 sequences; 2,299,509,015 total letters Query= NC_018504.1 Length=123876 Score E Sequences producing significant alignments: (Bits) Value seq456 102 6e-17 seq375 82.4 6e-11 >seq456 Length=1409724 Score = 102 bits (112), Expect = 6e-17 Identities = 145/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 101267 TGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGC 101326 || ||||| || ||||| || || |||||||| | | ||| | | |||| |||| ||| Sbjct 1113613 TGCAGGGTCGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCTTCCAGCTGC 1113554 Query 101327 TTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTT 101386 || |||||||| || | | ||| || || || || ||||| ||||||||||| || || Sbjct 1113553 TTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGGGGGATGCCCTCTTTATCTTGGATCTTG 1113494 Query 101387 TGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTT 101446 || ||| | || | |||||| | ||||| || || |||| || ||||| || Sbjct 1113493 GCCTTCACATTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCAGTC 1113434 Query 101447 AAAGTTTTTACAAATATCTGCATG 101470 | || || || || ||||||||| Sbjct 1113433 AGGGTCTTCACGAAGATCTGCATG 1113410 Score = 102 bits (112), Expect = 6e-17 Identities = 145/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 101267 TGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGC 101326 || ||||| || ||||| || || |||||||| | | ||| | | |||| |||| ||| Sbjct 1113841 TGCAGGGTCGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCTTCCAGCTGC 1113782 Query 101327 TTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTT 101386 || |||||||| || | | ||| || || || || ||||| ||||||||||| || || Sbjct 1113781 TTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGGGGGATGCCCTCTTTATCTTGGATCTTG 1113722 Query 101387 TGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTT 101446 || ||| | || | |||||| | ||||| || || |||| || ||||| || Sbjct 1113721 GCCTTCACATTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCAGTC 1113662 Query 101447 AAAGTTTTTACAAATATCTGCATG 101470 | || || || || ||||||||| Sbjct 1113661 AGGGTCTTCACGAAGATCTGCATG 1113638 Score = 102 bits (112), Expect = 6e-17 Identities = 145/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 101267 TGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGC 101326 || ||||| || ||||| || || |||||||| | | ||| | | |||| |||| ||| Sbjct 1114069 TGCAGGGTCGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCTTCCAGCTGC 1114010 Query 101327 TTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTT 101386 || |||||||| || | | ||| || || || || ||||| ||||||||||| || || Sbjct 1114009 TTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGGGGGATGCCCTCTTTATCTTGGATCTTG 1113950 Query 101387 TGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTT 101446 || ||| | || | |||||| | ||||| || || |||| || ||||| || Sbjct 1113949 GCCTTCACATTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCAGTC 1113890 Query 101447 AAAGTTTTTACAAATATCTGCATG 101470 | || || || || ||||||||| Sbjct 1113889 AGGGTCTTCACGAAGATCTGCATG 1113866 Score = 100 bits (110), Expect = 2e-16 Identities = 144/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 101267 TGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGC 101326 || ||||| || ||||| || || |||||||| | | ||| | | |||| |||| ||| Sbjct 1113385 TGCAGGGTCGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCTTCCAGCTGC 1113326 Query 101327 TTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTT 101386 || |||||||| || | | ||| || || || || ||||| ||||||||||| || || Sbjct 1113325 TTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGGGGGATGCCCTCTTTATCTTGGATCTTG 1113266 Query 101387 TGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTT 101446 || ||| | || | |||||| | ||||| || || |||| || ||||| || Sbjct 1113265 GCCTTCACATTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCAGTC 1113206 Query 101447 AAAGTTTTTACAAATATCTGCAT 101469 | || || || || |||||||| Sbjct 1113205 AGGGTCTTCACGAAGATCTGCAT 1113183 Score = 100 bits (110), Expect = 2e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 || || || | ||| | ||| | || || || || ||||| || || |||||||| | Sbjct 1114321 CCACCCCTCAGACGGAGAACCAGGTGGAGAGTCGACTCTTTCTGGATGTTGTAATCAGAA 1114262 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | ||| | | |||| |||| ||||| |||||||| || | | ||| || || || || Sbjct 1114261 AGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGGGGG 1114202 Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422 ||||| ||||||||||| || || || ||| | || | |||||| | ||||| Sbjct 1114201 ATGCCCTCTTTATCTTGGATCTTGGCCTTCACATTCTCGATGGTGTCACTGGGCTCCACC 1114142 Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCATG 101470 || || |||| || ||||| || | || || || || ||||||||| Sbjct 1114141 TCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCATG 1114094 >seq375 Length=1568959 Score = 82.4 bits (90), Expect = 6e-11 Identities = 142/204 (70%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 101267 TGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGC 101326 || || || || |||| || ||| ||||||| | | | | || |||| |||| ||| Sbjct 1493362 TGCAGAGTTGACCCTTTCTGGATAATGTAATCAGAAAGACTGATGCCATCTTCCAGCTGC 1493303 Query 101327 TTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTT 101386 || ||| |||| || | | ||| || || || || ||||||||||||||||| || || Sbjct 1493302 TTGCCTACAAAGATGAGCCTCTGCTGGTCAGGGGGGATGCCTTCTTTATCTTGGATCTTA 1493243 Query 101387 TGTTTTACAATTTCT-ACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGT 101445 || || ||| || | |||| | | |||||| || |||| || || |||| | | Sbjct 1493242 GCCTTCAC-ATTCCTGATGGTGTTACTGGGTTCCACCTCCAGAGAGATAGTCTTGCTGAT 1493184 Query 101446 TAAAGTTTTTACAAATATCTGCAT 101469 | || || ||||| |||||||| Sbjct 1493183 CAGGGTCTTCACAAAGATCTGCAT 1493160 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 395884943473719