Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ailuropoda_20melanoleuca_20[refseq_20GCF_5F000004335.2_202009-12-15] 81,467 sequences; 2,299,509,015 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq462 163 5e-35 seq11 141 2e-28 seq3057 91.5 3e-13 >seq462 Length=1389817 Score = 163 bits (180), Expect = 5e-35 Identities = 182/243 (75%), Gaps = 0/243 (0%) Strand=Plus/Minus Query 241385 AGCTGCTGACAGCCTTGGCACATGTGCCACAGGACCTCCTGTTTGAGTTGGGCCACCTGG 241444 ||| |||| ||||| | | | ||| || ||||| ||||||||| ||||||||||| Sbjct 201853 AGCAGCTGGCAGCCGTTACTGACGTGGGTCATGACCTTCTGTTTGAGCTGGGCCACCTGC 201794 Query 241445 TCCCGCAGAACGGACGCGGTATTGGACAGTCCTGCGTTGTCAGACTTGAGCACCTTCACT 241504 ||||| || | || || | ||||| || ||||| || | |||||| |||||| Sbjct 201793 TCCCGTAGGAGCCCAGCAGTGCTCGACAGCCCCGCGTTCTCGGCCTTGAGTGTCTTCACC 201734 Query 241505 TTCTCCTCCAGCCGCGCGATGCGTTCCAGTTTGCGCCGGCGGCATTTGGTGGCTGCCAAG 241564 || |||||||| ||||||||||| ||||| || ||| ||||| |||||||| |||| Sbjct 201733 TTGTCCTCCAGGCGCGCGATGCGCTCCAGCTTCCGCTTCCGGCACTTGGTGGCCGCCAGC 201674 Query 241565 CGGTTCCGGAGTCTCTTACGTTCCGCCTTGATGCGTTCCTGGTCCTCCATGTCGATCGGA 241624 |||||||| || | ||| || ||| | |||||||| ||||| || ||||| | ||| || Sbjct 201673 CGGTTCCGCAGCCGCTTGCGCTCCACTTTGATGCGCTCCTGATCTTCCATATTGATGGGG 201614 Query 241625 GAC 241627 ||| Sbjct 201613 GAC 201611 >seq11 Length=5147107 Score = 141 bits (156), Expect = 2e-28 Identities = 159/213 (75%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 241415 AGGACCTCCTGTTTGAGTTGGGCCACCTGGTCCCGCAGAACGGACGCGGTATTGGACAGT 241474 ||||||| ||| ||||| || |||||||| |||||||| | | ||| || | ||| Sbjct 1576287 AGGACCTTCTGCTTGAGCTGCGCCACCTGCTCCCGCAGCAGGCTCGCTGTGGACGCCAGC 1576346 Query 241475 CCTGCGTTGTCAGACTTGAGCACCTTCACTTTCTCCTCCAGCCGCGCGATGCGTTCCAGT 241534 | | ||| | ||||||| ||||||||||||||| || || | |||||| ||||| Sbjct 1576347 TCCGTGTTCTGGCTCTTGAGCGTCTTCACTTTCTCCTCGAGGCGAGAGATGCGCTCCAGC 1576406 Query 241535 TTGCGCCGGCGGCATTTGGTGGCTGCCAAGCGGTTCCGGAGTCTCTTACGTTCCGCCTTG 241594 |||||| |||||| || | ||| || | |||||| || || | ||| || |||||||| Sbjct 1576407 TTGCGCTTGCGGCACTTAGAGGCAGCGATGCGGTTGCGCAGCCGCTTGCGCTCCGCCTTA 1576466 Query 241595 ATGCGTTCCTGGTCCTCCATGTCGATCGGAGAC 241627 ||||| ||||| ||||||||||| || ||| Sbjct 1576467 ATGCGCTCCTGCGTGTCCATGTCGATGGGCGAC 1576499 >seq3057 Length=47849 Score = 91.5 bits (100), Expect = 3e-13 Identities = 96/124 (77%), Gaps = 2/124 (2%) Strand=Plus/Minus Query 213528 GTGTACTCCATGATCTCGGTGCACAGGTTGCTGCATCGGATGGTGCCCAGGTTCTGGTGG 213587 || ||||| | || || |||||||||||||||||| ||| || ||||||||||| ||| Sbjct 4149 GTATACTCTACTATTTCTGTGCACAGGTTGCTGCATTTGATCGTTCCCAGGTTCTGCTGG 4090 Query 213588 TTTGACTTTGCGTTGGCA-GAATCCTTGTAGAGCATGTAGGGGGACCCGGTCTCTAGCTG 213646 ||| || || | || ||||| |||||||||||||| |||| || |||||| ||| Sbjct 4089 -TTGCTCTTCCGATTACAGGAATCTTTGTAGAGCATGTACGGGGTACCTGTCTCTGTCTG 4031 Query 213647 GGAC 213650 ||| Sbjct 4030 AGAC 4027 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 930584185217280