Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ailuropoda_20melanoleuca_20[refseq_20GCF_5F000004335.2_202009-12-15] 81,467 sequences; 2,299,509,015 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq3007 156 3e-32 seq41 122 6e-22 seq972 100 2e-15 seq138 87.8 1e-11 seq1410 86.0 4e-11 >seq3007 Length=51886 Score = 156 bits (172), Expect = 3e-32 Identities = 369/553 (67%), Gaps = 6/553 (1%) Strand=Plus/Minus Query 474324 GAATTGCAATTGGTATTGATTTAGGAACTACTTACAGTTGTGTAGCTGTTTGGCAAAATG 474383 |||| || || || ||||| | || || || ||| || || | || | || | | Sbjct 39895 GAATGGCCATCGGCATTGACCTGGGCACCACCTACTCCTGCGTGGGGGTGTTCCAGCACG 39836 Query 474384 GTAAAGTAGAAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTT 474443 | || || || || || ||||| ||||| || || | || || || ||||| | | Sbjct 39835 GCAAGGTGGAGATCATCGCCAACGACCAGGGCAACCGCACCACCCCCAGCTATGTGGCCT 39776 Query 474444 TTACTGAAACTGAACATCTTATTGGAGATGCTGCTAAATATCAAGCTGCATCTAATCCTG 474503 | || || ||||| | || || || ||||| || || | || | || ||||| Sbjct 39775 TCACCGACACTGAGCGGCTCATCGGGGATGCCGCCAAGAACCAGGTGGCCATGAATCCCC 39716 Query 474504 TTAATACTATTTTTGATGCTAAAAGATTGATTGGTCGTAATTTTGATGATACCACTGTCC 474563 || ||| | |||||||| ||| | ||||||| | || ||| ||||| | || | Sbjct 39715 AGAACACTGTCTTTGATGCCAAACGTCTGATTGGCAGGAAGTTTAATGATCCTGTAGTGC 39656 Query 474564 AATCTGATATGCGTCATTGGCCTTTTAAGGTGATAAATGTTGGTGGTAAACCATATATA- 474622 |||| |||||| | |||||||||| | || || |||| || || ||||| | || Sbjct 39655 AATCAGATATGAAACTTTGGCCTTTTCAAGTTATCAATGAAGGAGGCAAACCCAAGGTAA 39596 Query 474623 -GAAGCAATACACGCAGGTGAAACTAAACAATTTTCACCGGAACAAATTTCTTCAATGGT 474681 | | ||||| || |||| ||| || | || || |||| ||||| ||||| Sbjct 39595 TGGTGTCATACAAAGGGGAGAAA--AAAGCTTTCTATCCTGAGGAAATCTCTTCTATGGT 39538 Query 474682 TTTAGCCAAAATGAAACAAACCGC-GAGCTCATATCTTGGACAAGAAGTAACTGATGCAG 474740 | | || ||||| | || || ||| | | | | || || || || |||||| Sbjct 39537 ACTGACAAAGATGAAGGAGACTGCTGAGG-CTTTTTTGGGCCACCCTGTTACCAATGCAG 39479 Query 474741 TAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGAA 474800 | || ||||| ||||| ||||| |||||||||||||| || || || || ||||| || Sbjct 39478 TGATCACTGTACCAGCCTATTTCAATGATTCTCAACGCCAGGCCACCAAGGATGCAGGTG 39419 Query 474801 GAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGCTT 474860 ||||| ||||| ||||| || | ||||| |||||||| ||||| || || |||| | Sbjct 39418 TGATTGCGGGTCTCAATGTGCTAAGAATTATCAATGAACCCACAGCTGCTGCCATTGCAT 39359 Query 474861 ATGGTCTTGATAA 474873 |||| | ||||| Sbjct 39358 ATGGCTTAGATAA 39346 Score = 87.8 bits (96), Expect = 1e-11 Identities = 69/83 (83%), Gaps = 0/83 (0%) Strand=Plus/Minus Query 476090 GGTATTCCTCCTGCTCCCAGAGGAGTTCCTCAAATTGAAGTTACTTTTGATATTGATGCA 476149 || || |||||||| ||||| ||||| ||||| ||||| || || ||||| |||||||| Sbjct 38519 GGAATCCCTCCTGCACCCAGGGGAGTGCCTCAGATTGAGGTGACCTTTGACATTGATGCC 38460 Query 476150 AATGGTATTCTTAATGTTACTGC 476172 ||||||||||| ||||| || || Sbjct 38459 AATGGTATTCTCAATGTAACAGC 38437 >seq41 Length=3861741 Score = 122 bits (134), Expect = 6e-22 Identities = 323/487 (66%), Gaps = 10/487 (2%) Strand=Plus/Minus Query 475340 GAAGATGGTCTTTTCTCTGTAAGAGCAACAGCTGGAGATTCACATCTTGGTGGTGAAGAT 475399 |||||||| | ||| || | | | ||||||||||| | ||| | ||||| ||||| Sbjct 3281391 GAAGATGGAATCTTCGAGGTCAAATCCACAGCTGGAGACACTCATTTAGGTGGAGAAGAC 3281332 Query 475400 TTTGATAATAGACTTGT--ATCATGGTGTGTTGAAGATTTCAAGAGGAAAAATAA--AGT 475455 |||||||| || | || | ||| | | ||| ||| ||||| | ||| |||| || Sbjct 3281331 TTTGATAACCGAATGGTCAACCAT--TTTATTGCAGAGTTCAAACGCAAACATAAGAAGG 3281274 Query 475456 TGATCTTTCAACATCTGCTAAAGCATTAAGACGTCTTAGAACTGCTTGTGAACGTGCTAA 475515 ||| | || | | | ||| | | ||||| | |||||||||||||||||||| Sbjct 3281273 ACATCAGTGAAAACAAG--AGGGCAGTTCGTCGTCTCCGTACTGCTTGTGAACGTGCTAA 3281216 Query 475516 GCGAGCTCTTTCTTCTGCTACTCAAACTACTGTTGAAGTTGATTCTCTTTTTGAAGGAAT 475575 ||| | |||||||| || || | | | |||| |||||||||| | ||||||||| Sbjct 3281215 GCGTACACTTTCTTCCAGCACCCAGGCCAGTATTGAGATTGATTCTCTGTATGAAGGAAT 3281156 Query 475576 TGATTATAATACTCTTATTACAAGGGCTAAATTTGAAGATATTTGTTCTGATCTCTTTAG 475635 || | |||| |||||| | || |||||||| | | |||| || || | Sbjct 3281155 CGACTTCTATACCTCTATTACTCGTGCCCGCTTTGAAGAATTAAATGCTGACCTGTTCCG 3281096 Query 475636 AAAAACAATTGAACCCGTTGAACAAGTTCTCAGAGATTCTAAACTTGACAAATCACAAGT 475695 || | || || || || ||| || | ||| | || || ||||| || || | Sbjct 3281095 TGGCACCCTGGACCCTGTAGAGAAAGCCCTTCGGGATGCCAAGCTAGACAAGTCTCAGAT 3281036 Query 475696 CCATGAAATTGTTCTTGTAGGAGGTTCAACAAGAATTCCAAAAATAAGAGAAATGCTTTC 475755 ||| || ||||| || || || ||||| || | || || || || ||||| | | Sbjct 3281035 CCACGATATTGTCCTGGTGGGTGGTTCTACCCGTATCCCCAAGAT-TCAGAAACTTCTAC 3280977 Query 475756 ATCATATTTT-AATGGTAAAAAGTTAAATGAAAGTGTAAATCCTGATGAAGCTGTTGCAT 475814 | || |||| || || ||| | | ||| | || | || |||||||| |||||||| | Sbjct 3280976 AAGATTTTTTCAACGGAAAAGAACTGAATAAGAGCATCAACCCTGATGAGGCTGTTGCTT 3280917 Query 475815 ATGGAGC 475821 |||| || Sbjct 3280916 ATGGTGC 3280910 Score = 100 bits (110), Expect = 2e-15 Identities = 121/165 (73%), Gaps = 0/165 (0%) Strand=Plus/Minus Query 474328 TGCAATTGGTATTGATTTAGGAACTACTTACAGTTGTGTAGCTGTTTGGCAAAATGGTAA 474387 |||| |||| |||||| | || || || ||| |||||| | ||| | || | || || Sbjct 3282665 TGCAGTTGGCATTGATCTTGGCACCACCTACTCTTGTGTGGGTGTCTTCCAGCACGGGAA 3282606 Query 474388 AGTAGAAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTTAC 474447 ||| ||||||||||||||||| || || || |||| || ||| ||||| |||| || Sbjct 3282605 AGTGGAAATAATTGCCAATGATCAGGGAAACCGAACCACCCCAAGTTATGTCGCTTTCAC 3282546 Query 474448 TGAAACTGAACATCTTATTGGAGATGCTGCTAAATATCAAGCTGC 474492 ||| ||||||| | || || ||||| || || |||||| ||| Sbjct 3282545 TGACACTGAACGATTGATCGGTGATGCCGCAAAGAATCAAGTTGC 3282501 Score = 96.9 bits (106), Expect = 2e-14 Identities = 100/131 (76%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 476051 ACTAAAGATAATAACAAACTTGGAACTTTTAATCTTGAAGGTATTCCTCCTGCTCCCAGA 476110 || || ||||| ||| ||||| | || | || ||| || ||||||||||| | Sbjct 3280226 ACCAAGGATAACAACCTGCTTGGCAAGTTCGAACTCACAGGCATACCTCCTGCTCCTCGT 3280167 Query 476111 GGAGTTCCTCAAATTGAAGTTACTTTTGATATTGATGCAAATGGTATTCTTAATGTTACT 476170 || |||||||| || ||||| ||||||||||||||||| |||||||| |||||||| || Sbjct 3280166 GGTGTTCCTCAGATCGAAGTCACTTTTGATATTGATGCTAATGGTATCCTTAATGTCTCT 3280107 Query 476171 GCTTGTGATAA 476181 ||| ||||| Sbjct 3280106 GCTGTGGATAA 3280096 >seq972 Length=782534 Score = 100 bits (110), Expect = 2e-15 Identities = 189/278 (68%), Gaps = 0/278 (0%) Strand=Plus/Minus Query 474328 TGCAATTGGTATTGATTTAGGAACTACTTACAGTTGTGTAGCTGTTTGGCAAAATGGTAA 474387 |||| ||| |||||| | || || | ||| |||||| | ||| | | |||| || Sbjct 696188 TGCAGTTGTAATTGATCTTGGCACCATCTACTCTTGTGTGGGTGTCTTCTAGCATGGGAA 696129 Query 474388 AGTAGAAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTTAC 474447 ||| ||||||| |||||| ||||| || || ||||| || ||| |||| | ||||| Sbjct 696128 AGTGGAAATAACTGCCAACGACCAGGGAAACAGAACCACCCCAAGTTATGCCCCCTTTAC 696069 Query 474448 TGAAACTGAACATCTTATTGGAGATGCTGCTAAATATCAAGCTGCATCTAATCCTGTTAA 474507 ||| | || | || | |||||| || |||||| |||| || || || Sbjct 696068 TGATGCCAAATGATTGATCAGCGATGCTATGAAGAATCAAGTTGCAGTGAACCCCACCAA 696009 Query 474508 TACTATTTTTGATGCTAAAAGATTGATTGGTCGTAATTTTGATGATACCACTGTCCAATC 474567 || ||||||||| || | |||| || || | || |||||| | ||||||||| Sbjct 696008 CACAGTTTTTGATGTCGAATGTCTGATCGGACGGAGGTTCGATGATGCTGTTGTCCAATC 695949 Query 474568 TGATATGCGTCATTGGCCTTTTAAGGTGATAAATGTTG 474605 ||||||| |||||||| ||| |||| ||||| || Sbjct 695948 TGATATGAAGCATTGGCCCTTTGTGGTGGCAAATGCTG 695911 >seq138 Length=2487289 Score = 87.8 bits (96), Expect = 1e-11 Identities = 83/106 (78%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 474735 ATGCAGTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATG 474794 ||||||| ||||||| ||||| ||||| |||||| | ||||| || ||||| ||||||| Sbjct 366729 ATGCAGTTGTTACTGTACCAGCCTATTTCAATGATGCCCAACGCCAGGCAACCAAAGATG 366670 Query 474795 CGGGAAGAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACC 474840 | |||| ||||| || | || ||| | | || ||||||||||| Sbjct 366669 CAGGAACTATTGCTGGATTGAACGTTATGAGGATCATTAATGAACC 366624 Score = 86.0 bits (94), Expect = 4e-11 Identities = 95/127 (75%), Gaps = 0/127 (0%) Strand=Plus/Minus Query 476035 AGGTGAAAGAAAATTCACTAAAGATAATAACAAACTTGGAACTTTTAATCTTGAAGGTAT 476094 ||||||| || | || ||||| ||| || || ||||||||| |||| || || Sbjct 364781 AGGTGAACGACCCCTGACAAAAGACAATCACCTTCTGGGAACTTTTGATCTGACTGGAAT 364722 Query 476095 TCCTCCTGCTCCCAGAGGAGTTCCTCAAATTGAAGTTACTTTTGATATTGATGCAAATGG 476154 ||||||||||||| | || || || || |||||||| || ||||| || |||| ||||| Sbjct 364721 TCCTCCTGCTCCCCGTGGGGTCCCACAGATTGAAGTCACCTTTGAGATAGATGTGAATGG 364662 Query 476155 TATTCTT 476161 |||||| Sbjct 364661 CATTCTT 364655 >seq1410 Length=511009 Score = 86.0 bits (94), Expect = 4e-11 Identities = 318/483 (66%), Gaps = 19/483 (4%) Strand=Plus/Minus Query 474386 AAAGTAGAAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTT 474445 ||||| |||||||||||||||| | || || |||| || ||| ||||| || ||| Sbjct 91149 AAAGTGAAAATAATTGCCAATGATGAGGGAAACTGAACCACCCCAAGTTATGTCTCCTTT 91090 Query 474446 ACTGAAACTGAACATCTTATTGGAGATGCTGCTAAATATCAAGCTGCATCTAATCCTGTT 474505 ||||||||||| | || | ||| |||| || | |||| |||| || || Sbjct 91089 ---GAAACTGAACACTTGATCAGTGATACTGCAAAGAACCAAGTTGCAATGAACCCCACC 91033 Query 474506 AATACTATTTTTGATGCTAAAAGATTGATTGGTCGTAATTTTGATGATACCACTGTCCAA 474565 || || |||||| || ||| | ||| ||| ||| ||||| || | ||||||| Sbjct 91032 AACACAGGTTTTGAGGCCAAATGCCTGAATGGATGTAGATTTGACAATGCTGTTGTCCAA 90973 Query 474566 TCTGATATGCGTCATTGGCCTTTTAAGGTGATAAATGTTGGTGGTAAACCATATATAGAA 474625 ||||||||| | ||||||||| | ||| | | || || ||| | ||| | | || Sbjct 90972 TCTGATATGAAGCTTTGGCCTTTCATAGTG-TGAGTGGTGATGGCAGACCCAAAGTTTAA 90914 Query 474626 G--CAATACACGCAGGTGAAACTAAACAATTTTCACCGGAACAAATTTCTTCAATGGTTT 474683 | |||||| | || ||||| ||| | ||| | | | | | || | || |||| Sbjct 90913 GTAGAATACAAG--GGAGAAAC-AAAAAGTTTCTATC--CAGAGGTGTCCCCTATTGTTT 90859 Query 474684 TAGCCAAAATGAAACAAACCGC-GAGCTCATATCTTGGACAAGA--AGTAACTGATGCAG 474740 | | || || || ||| | | ||| | || ||||| |||| | | || ||| || Sbjct 90858 TTACAAAGATAAAGGAAATCACAGAG-GCTTACCTTGG-GAAGACTACT-ACCAATGTAG 90802 Query 474741 TAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGAA 474800 | | | || || || || ||| |||| ||||| | | | || |||||||| |||| Sbjct 90801 TTGTCATAGTACCTGCTTACTTT-ATGACTCTCAGCATTGGCCTACCAAAGATGCTGGAA 90743 Query 474801 GAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGCTT 474860 |||||| |||| ||||| | | || | ||||| |||| || || | |||||| Sbjct 90742 TTATTGCA-GTCTAAATGTACTTAGAATCACCAATGAGCCAAATGCTGCTTCTGTTGCTT 90684 Query 474861 ATG 474863 ||| Sbjct 90683 ATG 90681 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3264684685092116