Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ailuropoda_20melanoleuca_20[refseq_20GCF_5F000004335.2_202009-12-15]
81,467 sequences; 2,299,509,015 total letters
Query= NC_020104.1
Length=1021348
Score E
Sequences producing significant alignments: (Bits) Value
seq3007 156 3e-32
seq41 122 6e-22
seq972 100 2e-15
seq138 87.8 1e-11
seq1410 86.0 4e-11
>seq3007
Length=51886
Score = 156 bits (172), Expect = 3e-32
Identities = 369/553 (67%), Gaps = 6/553 (1%)
Strand=Plus/Minus
Query 474324 GAATTGCAATTGGTATTGATTTAGGAACTACTTACAGTTGTGTAGCTGTTTGGCAAAATG 474383
|||| || || || ||||| | || || || ||| || || | || | || | |
Sbjct 39895 GAATGGCCATCGGCATTGACCTGGGCACCACCTACTCCTGCGTGGGGGTGTTCCAGCACG 39836
Query 474384 GTAAAGTAGAAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTT 474443
| || || || || || ||||| ||||| || || | || || || ||||| | |
Sbjct 39835 GCAAGGTGGAGATCATCGCCAACGACCAGGGCAACCGCACCACCCCCAGCTATGTGGCCT 39776
Query 474444 TTACTGAAACTGAACATCTTATTGGAGATGCTGCTAAATATCAAGCTGCATCTAATCCTG 474503
| || || ||||| | || || || ||||| || || | || | || |||||
Sbjct 39775 TCACCGACACTGAGCGGCTCATCGGGGATGCCGCCAAGAACCAGGTGGCCATGAATCCCC 39716
Query 474504 TTAATACTATTTTTGATGCTAAAAGATTGATTGGTCGTAATTTTGATGATACCACTGTCC 474563
|| ||| | |||||||| ||| | ||||||| | || ||| ||||| | || |
Sbjct 39715 AGAACACTGTCTTTGATGCCAAACGTCTGATTGGCAGGAAGTTTAATGATCCTGTAGTGC 39656
Query 474564 AATCTGATATGCGTCATTGGCCTTTTAAGGTGATAAATGTTGGTGGTAAACCATATATA- 474622
|||| |||||| | |||||||||| | || || |||| || || ||||| | ||
Sbjct 39655 AATCAGATATGAAACTTTGGCCTTTTCAAGTTATCAATGAAGGAGGCAAACCCAAGGTAA 39596
Query 474623 -GAAGCAATACACGCAGGTGAAACTAAACAATTTTCACCGGAACAAATTTCTTCAATGGT 474681
| | ||||| || |||| ||| || | || || |||| ||||| |||||
Sbjct 39595 TGGTGTCATACAAAGGGGAGAAA--AAAGCTTTCTATCCTGAGGAAATCTCTTCTATGGT 39538
Query 474682 TTTAGCCAAAATGAAACAAACCGC-GAGCTCATATCTTGGACAAGAAGTAACTGATGCAG 474740
| | || ||||| | || || ||| | | | | || || || || ||||||
Sbjct 39537 ACTGACAAAGATGAAGGAGACTGCTGAGG-CTTTTTTGGGCCACCCTGTTACCAATGCAG 39479
Query 474741 TAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGAA 474800
| || ||||| ||||| ||||| |||||||||||||| || || || || ||||| ||
Sbjct 39478 TGATCACTGTACCAGCCTATTTCAATGATTCTCAACGCCAGGCCACCAAGGATGCAGGTG 39419
Query 474801 GAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGCTT 474860
||||| ||||| ||||| || | ||||| |||||||| ||||| || || |||| |
Sbjct 39418 TGATTGCGGGTCTCAATGTGCTAAGAATTATCAATGAACCCACAGCTGCTGCCATTGCAT 39359
Query 474861 ATGGTCTTGATAA 474873
|||| | |||||
Sbjct 39358 ATGGCTTAGATAA 39346
Score = 87.8 bits (96), Expect = 1e-11
Identities = 69/83 (83%), Gaps = 0/83 (0%)
Strand=Plus/Minus
Query 476090 GGTATTCCTCCTGCTCCCAGAGGAGTTCCTCAAATTGAAGTTACTTTTGATATTGATGCA 476149
|| || |||||||| ||||| ||||| ||||| ||||| || || ||||| ||||||||
Sbjct 38519 GGAATCCCTCCTGCACCCAGGGGAGTGCCTCAGATTGAGGTGACCTTTGACATTGATGCC 38460
Query 476150 AATGGTATTCTTAATGTTACTGC 476172
||||||||||| ||||| || ||
Sbjct 38459 AATGGTATTCTCAATGTAACAGC 38437
>seq41
Length=3861741
Score = 122 bits (134), Expect = 6e-22
Identities = 323/487 (66%), Gaps = 10/487 (2%)
Strand=Plus/Minus
Query 475340 GAAGATGGTCTTTTCTCTGTAAGAGCAACAGCTGGAGATTCACATCTTGGTGGTGAAGAT 475399
|||||||| | ||| || | | | ||||||||||| | ||| | ||||| |||||
Sbjct 3281391 GAAGATGGAATCTTCGAGGTCAAATCCACAGCTGGAGACACTCATTTAGGTGGAGAAGAC 3281332
Query 475400 TTTGATAATAGACTTGT--ATCATGGTGTGTTGAAGATTTCAAGAGGAAAAATAA--AGT 475455
|||||||| || | || | ||| | | ||| ||| ||||| | ||| |||| ||
Sbjct 3281331 TTTGATAACCGAATGGTCAACCAT--TTTATTGCAGAGTTCAAACGCAAACATAAGAAGG 3281274
Query 475456 TGATCTTTCAACATCTGCTAAAGCATTAAGACGTCTTAGAACTGCTTGTGAACGTGCTAA 475515
||| | || | | | ||| | | ||||| | ||||||||||||||||||||
Sbjct 3281273 ACATCAGTGAAAACAAG--AGGGCAGTTCGTCGTCTCCGTACTGCTTGTGAACGTGCTAA 3281216
Query 475516 GCGAGCTCTTTCTTCTGCTACTCAAACTACTGTTGAAGTTGATTCTCTTTTTGAAGGAAT 475575
||| | |||||||| || || | | | |||| |||||||||| | |||||||||
Sbjct 3281215 GCGTACACTTTCTTCCAGCACCCAGGCCAGTATTGAGATTGATTCTCTGTATGAAGGAAT 3281156
Query 475576 TGATTATAATACTCTTATTACAAGGGCTAAATTTGAAGATATTTGTTCTGATCTCTTTAG 475635
|| | |||| |||||| | || |||||||| | | |||| || || |
Sbjct 3281155 CGACTTCTATACCTCTATTACTCGTGCCCGCTTTGAAGAATTAAATGCTGACCTGTTCCG 3281096
Query 475636 AAAAACAATTGAACCCGTTGAACAAGTTCTCAGAGATTCTAAACTTGACAAATCACAAGT 475695
|| | || || || || ||| || | ||| | || || ||||| || || |
Sbjct 3281095 TGGCACCCTGGACCCTGTAGAGAAAGCCCTTCGGGATGCCAAGCTAGACAAGTCTCAGAT 3281036
Query 475696 CCATGAAATTGTTCTTGTAGGAGGTTCAACAAGAATTCCAAAAATAAGAGAAATGCTTTC 475755
||| || ||||| || || || ||||| || | || || || || ||||| | |
Sbjct 3281035 CCACGATATTGTCCTGGTGGGTGGTTCTACCCGTATCCCCAAGAT-TCAGAAACTTCTAC 3280977
Query 475756 ATCATATTTT-AATGGTAAAAAGTTAAATGAAAGTGTAAATCCTGATGAAGCTGTTGCAT 475814
| || |||| || || ||| | | ||| | || | || |||||||| |||||||| |
Sbjct 3280976 AAGATTTTTTCAACGGAAAAGAACTGAATAAGAGCATCAACCCTGATGAGGCTGTTGCTT 3280917
Query 475815 ATGGAGC 475821
|||| ||
Sbjct 3280916 ATGGTGC 3280910
Score = 100 bits (110), Expect = 2e-15
Identities = 121/165 (73%), Gaps = 0/165 (0%)
Strand=Plus/Minus
Query 474328 TGCAATTGGTATTGATTTAGGAACTACTTACAGTTGTGTAGCTGTTTGGCAAAATGGTAA 474387
|||| |||| |||||| | || || || ||| |||||| | ||| | || | || ||
Sbjct 3282665 TGCAGTTGGCATTGATCTTGGCACCACCTACTCTTGTGTGGGTGTCTTCCAGCACGGGAA 3282606
Query 474388 AGTAGAAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTTAC 474447
||| ||||||||||||||||| || || || |||| || ||| ||||| |||| ||
Sbjct 3282605 AGTGGAAATAATTGCCAATGATCAGGGAAACCGAACCACCCCAAGTTATGTCGCTTTCAC 3282546
Query 474448 TGAAACTGAACATCTTATTGGAGATGCTGCTAAATATCAAGCTGC 474492
||| ||||||| | || || ||||| || || |||||| |||
Sbjct 3282545 TGACACTGAACGATTGATCGGTGATGCCGCAAAGAATCAAGTTGC 3282501
Score = 96.9 bits (106), Expect = 2e-14
Identities = 100/131 (76%), Gaps = 0/131 (0%)
Strand=Plus/Minus
Query 476051 ACTAAAGATAATAACAAACTTGGAACTTTTAATCTTGAAGGTATTCCTCCTGCTCCCAGA 476110
|| || ||||| ||| ||||| | || | || ||| || ||||||||||| |
Sbjct 3280226 ACCAAGGATAACAACCTGCTTGGCAAGTTCGAACTCACAGGCATACCTCCTGCTCCTCGT 3280167
Query 476111 GGAGTTCCTCAAATTGAAGTTACTTTTGATATTGATGCAAATGGTATTCTTAATGTTACT 476170
|| |||||||| || ||||| ||||||||||||||||| |||||||| |||||||| ||
Sbjct 3280166 GGTGTTCCTCAGATCGAAGTCACTTTTGATATTGATGCTAATGGTATCCTTAATGTCTCT 3280107
Query 476171 GCTTGTGATAA 476181
||| |||||
Sbjct 3280106 GCTGTGGATAA 3280096
>seq972
Length=782534
Score = 100 bits (110), Expect = 2e-15
Identities = 189/278 (68%), Gaps = 0/278 (0%)
Strand=Plus/Minus
Query 474328 TGCAATTGGTATTGATTTAGGAACTACTTACAGTTGTGTAGCTGTTTGGCAAAATGGTAA 474387
|||| ||| |||||| | || || | ||| |||||| | ||| | | |||| ||
Sbjct 696188 TGCAGTTGTAATTGATCTTGGCACCATCTACTCTTGTGTGGGTGTCTTCTAGCATGGGAA 696129
Query 474388 AGTAGAAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTTAC 474447
||| ||||||| |||||| ||||| || || ||||| || ||| |||| | |||||
Sbjct 696128 AGTGGAAATAACTGCCAACGACCAGGGAAACAGAACCACCCCAAGTTATGCCCCCTTTAC 696069
Query 474448 TGAAACTGAACATCTTATTGGAGATGCTGCTAAATATCAAGCTGCATCTAATCCTGTTAA 474507
||| | || | || | |||||| || |||||| |||| || || ||
Sbjct 696068 TGATGCCAAATGATTGATCAGCGATGCTATGAAGAATCAAGTTGCAGTGAACCCCACCAA 696009
Query 474508 TACTATTTTTGATGCTAAAAGATTGATTGGTCGTAATTTTGATGATACCACTGTCCAATC 474567
|| ||||||||| || | |||| || || | || |||||| | |||||||||
Sbjct 696008 CACAGTTTTTGATGTCGAATGTCTGATCGGACGGAGGTTCGATGATGCTGTTGTCCAATC 695949
Query 474568 TGATATGCGTCATTGGCCTTTTAAGGTGATAAATGTTG 474605
||||||| |||||||| ||| |||| ||||| ||
Sbjct 695948 TGATATGAAGCATTGGCCCTTTGTGGTGGCAAATGCTG 695911
>seq138
Length=2487289
Score = 87.8 bits (96), Expect = 1e-11
Identities = 83/106 (78%), Gaps = 0/106 (0%)
Strand=Plus/Minus
Query 474735 ATGCAGTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATG 474794
||||||| ||||||| ||||| ||||| |||||| | ||||| || ||||| |||||||
Sbjct 366729 ATGCAGTTGTTACTGTACCAGCCTATTTCAATGATGCCCAACGCCAGGCAACCAAAGATG 366670
Query 474795 CGGGAAGAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACC 474840
| |||| ||||| || | || ||| | | || |||||||||||
Sbjct 366669 CAGGAACTATTGCTGGATTGAACGTTATGAGGATCATTAATGAACC 366624
Score = 86.0 bits (94), Expect = 4e-11
Identities = 95/127 (75%), Gaps = 0/127 (0%)
Strand=Plus/Minus
Query 476035 AGGTGAAAGAAAATTCACTAAAGATAATAACAAACTTGGAACTTTTAATCTTGAAGGTAT 476094
||||||| || | || ||||| ||| || || ||||||||| |||| || ||
Sbjct 364781 AGGTGAACGACCCCTGACAAAAGACAATCACCTTCTGGGAACTTTTGATCTGACTGGAAT 364722
Query 476095 TCCTCCTGCTCCCAGAGGAGTTCCTCAAATTGAAGTTACTTTTGATATTGATGCAAATGG 476154
||||||||||||| | || || || || |||||||| || ||||| || |||| |||||
Sbjct 364721 TCCTCCTGCTCCCCGTGGGGTCCCACAGATTGAAGTCACCTTTGAGATAGATGTGAATGG 364662
Query 476155 TATTCTT 476161
||||||
Sbjct 364661 CATTCTT 364655
>seq1410
Length=511009
Score = 86.0 bits (94), Expect = 4e-11
Identities = 318/483 (66%), Gaps = 19/483 (4%)
Strand=Plus/Minus
Query 474386 AAAGTAGAAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTT 474445
||||| |||||||||||||||| | || || |||| || ||| ||||| || |||
Sbjct 91149 AAAGTGAAAATAATTGCCAATGATGAGGGAAACTGAACCACCCCAAGTTATGTCTCCTTT 91090
Query 474446 ACTGAAACTGAACATCTTATTGGAGATGCTGCTAAATATCAAGCTGCATCTAATCCTGTT 474505
||||||||||| | || | ||| |||| || | |||| |||| || ||
Sbjct 91089 ---GAAACTGAACACTTGATCAGTGATACTGCAAAGAACCAAGTTGCAATGAACCCCACC 91033
Query 474506 AATACTATTTTTGATGCTAAAAGATTGATTGGTCGTAATTTTGATGATACCACTGTCCAA 474565
|| || |||||| || ||| | ||| ||| ||| ||||| || | |||||||
Sbjct 91032 AACACAGGTTTTGAGGCCAAATGCCTGAATGGATGTAGATTTGACAATGCTGTTGTCCAA 90973
Query 474566 TCTGATATGCGTCATTGGCCTTTTAAGGTGATAAATGTTGGTGGTAAACCATATATAGAA 474625
||||||||| | ||||||||| | ||| | | || || ||| | ||| | | ||
Sbjct 90972 TCTGATATGAAGCTTTGGCCTTTCATAGTG-TGAGTGGTGATGGCAGACCCAAAGTTTAA 90914
Query 474626 G--CAATACACGCAGGTGAAACTAAACAATTTTCACCGGAACAAATTTCTTCAATGGTTT 474683
| |||||| | || ||||| ||| | ||| | | | | | || | || ||||
Sbjct 90913 GTAGAATACAAG--GGAGAAAC-AAAAAGTTTCTATC--CAGAGGTGTCCCCTATTGTTT 90859
Query 474684 TAGCCAAAATGAAACAAACCGC-GAGCTCATATCTTGGACAAGA--AGTAACTGATGCAG 474740
| | || || || ||| | | ||| | || ||||| |||| | | || ||| ||
Sbjct 90858 TTACAAAGATAAAGGAAATCACAGAG-GCTTACCTTGG-GAAGACTACT-ACCAATGTAG 90802
Query 474741 TAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGAA 474800
| | | || || || || ||| |||| ||||| | | | || |||||||| ||||
Sbjct 90801 TTGTCATAGTACCTGCTTACTTT-ATGACTCTCAGCATTGGCCTACCAAAGATGCTGGAA 90743
Query 474801 GAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGCTT 474860
|||||| |||| ||||| | | || | ||||| |||| || || | ||||||
Sbjct 90742 TTATTGCA-GTCTAAATGTACTTAGAATCACCAATGAGCCAAATGCTGCTTCTGTTGCTT 90684
Query 474861 ATG 474863
|||
Sbjct 90683 ATG 90681
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 3264684685092116
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