Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ailuropoda_20melanoleuca_20[refseq_20GCF_5F000004335.2_202009-12-15] 81,467 sequences; 2,299,509,015 total letters Query= NC_020474.2 Length=180421 Score E Sequences producing significant alignments: (Bits) Value seq810 360 2e-94 seq192 152 6e-32 seq1384 98.7 1e-15 >seq810 Length=940331 Score = 360 bits (398), Expect = 2e-94 Identities = 681/998 (68%), Gaps = 8/998 (1%) Strand=Plus/Minus Query 160052 CAGATGTTCGTCCAGACATTGGACGGCGAACACGTCAACGTCTTCGTCGAATTTATTTGC 160111 |||||| || |||| ||| |||| ||| || | ||||| ||| ||| || || || || Sbjct 565528 CAGATGCTCATCCAAACACTGGATGGCAAAGAGGTCAATGTCCATGTCAAACTTGTTGGC 565469 Query 160112 GAACAGATGGTGAGCGTTCTGTAGGATCCAGTGCACGTCTCCGGACCCGAACACGCAGAC 160171 |||| || || || ||| ||||||| || ||| || | ||||||||||| || Sbjct 565468 AAACAAGTGATGC---TTGCGTAACATCCAGTTCAAGTCACCTGCTCCGAACACGCACAC 565412 Query 160172 GGAACGTATGTGCACGCCGTTGCAAGGCGGGTACAGAGCTCCTTTCGCCACGTCACCTTC 160231 ||||| | ||| || || ||||| || ||||| | || || || | || |||||||| Sbjct 565411 AGAACGCACGTGGACCCCATTGCAGGGTGGGTAGGGGGCACCCTTGGAAACATCACCTTC 565352 Query 160232 GTAGTACTGCCACTTCACAAACCTGGCTATCGCCTGCATGTCGGAGGTGTCGTATTTGTA 160291 | |||||||||| || || ||||| || ||||| ||||||||||| |||| || || | Sbjct 565351 GAAGTACTGCCATTTGACGAACCTTGCAATCGCGTGCATGTCGGACATGTCATACTTCTG 565292 Query 160292 CATCAGGGGAACGGCACCGGGAACGCCGGGCATACGCTGTAGGGTGGCCCACAGGTGTTC 160351 | |||| | || || || || | || || | ||| | |||||||| || | || Sbjct 565291 GCTTAGGGACAGGGAGCCCGGGACATCAGGGATCCTCTGGATAGTGGCCCAGAGATACTC 565232 Query 160352 GTCGGGGCTGTACGTGTCCTTAGACCATTCCATGAACTCTCCGATTAACCTGTCCCGCAG 160411 || |||||||||||||| || | ||| ||||| |||| | |||| | | || Sbjct 565231 ATCCGGGCTGTACGTGTCTTTTGCCCACTCCATAAACTTTTGGATTTTTTCATTCTCTAG 565172 Query 160412 AACGTGAGTAACGTAGGATCTGGTCACGACAAAGTACGCGCTGCCGGAGAATATCGGTAT 160471 || | ||||| || | || || || || || ||||| || || | ||| | Sbjct 565171 CACATACCCCACGTACTTCCTACTGACCACGAAATAGGCACTGCCTGAAAACAGAGGTGT 565112 Query 160472 GGGTATAGGCGGCGTGTCTTTGTCCTGACCGGTGTTAGACACCACTCCTTTCACCAGCGC 160531 | ||| || |||||| || ||||| | || | ||| || || | | Sbjct 565111 TTCAAGAGGAGGGAGCATTTTGTCAGTCCCCGTGTTCGTCAGCTTTCCGTTAACAACTGT 565052 Query 160532 GTGTCGCTTCTTCCACCTGACCATCTTGTGCGGTGGCATGCGTTCCGTCTCTAGACTGTT 160591 || |||| |||||||| | | || | | ||||| | || || ||||| |||| Sbjct 565051 GTAATGCTTTTTCCACCTTTCTTTTTTATTGGACGGCATTCTCTCAGTTTCTAGGTTGTT 564992 Query 160592 GGCACCGTCGAGCGATTTCAGCTGCTTGACGATCTCTAGGTTCGTCTTGAGCGGAAAGTC 160651 |||| ||||| || |||| || ||| || || | ||| || || | |||||||| Sbjct 564991 TTCACCCATCAGCGACTTGAGCTTCTGGACAATTTCCAAGTTGGTTTTAATAGGAAAGTC 564932 Query 160652 GGTACCGCACAAGTTTATCACGTACTTCCATTTCGCGCTCAGGTCGTGCAG--GTCCCTC 160709 ||||||| | ||||||| ||||||||| | ||| |||| || || || ||| | Sbjct 564931 CATACCGCAAAGATTTATCAAGTACTTCCAGTCCGCACTCA--TCCTGTAGACGTCTTGC 564874 Query 160710 ATGCAATTAATATCTGCCTGCACGCGGCTCCAGGAAGCGTACACTACGTTCTCTAGTTTA 160769 ||||| || | || ||||| || || ||||| || || ||||| || |||| || | | Sbjct 564873 ATGCAGTTGAGGTCGGCCTGAACCCGACTCCAAGAGGCATACACCACACTCTCCAGCTGA 564814 Query 160770 CTGGCCACAAAGACGTTATCGAAACACGACACGATTCCCACCACCGCCAGAAAGAACATC 160829 |||||||||||||||||| ||| || ||| |||| || | |||||| || ||| Sbjct 564813 CTGGCCACAAAGACGTTACTGAAGCAGGACGCGATGCCAATCACCGCGGCCAAAAACGAA 564754 Query 160830 TTATCCGCCTTTCGGTCCACGTGCACGCAATACAGGTTCTGAGGCGCGTAGATGGCCCTG 160889 | | | ||||| ||||||||| | ||| || | ||||| ||| |||||||||||| Sbjct 564753 TCGGCTGACTTTCTGTCCACGTGAATGCAGTAGAAATTCTGGGGCATGTAGATGGCCCTC 564694 Query 160890 AGCAACCTCTCGAACATCTCTATCTTATGATGGATCACGATAGAGTAGGCTATCGGAAAC 160949 || | || || | ||| || || || || || | ||| || || |||||||| |||||| Sbjct 564693 AGGAGCCGGTCAAGCATTTCGATTTTGTGGTGAACCACTATGGAATAGGCTATGGGAAAC 564634 Query 160950 TCGGTCTCCTCGCGACTCAGGGACCCGGTCAGGTACTTTCGCGTCTTGATAAAATAATCA 161009 || | ||| || ||| || | | | | ||| || || |||||| ||| ||| | Sbjct 564633 TCCGCCTCTTCCTTACTAAGTGGCTGCATGATGTATTTGCGTCGCTTGATGAAAGAATTA 564574 Query 161010 CAATCCCGCGTCATGTTGATATA-CGATCGCGCGTCCA 161046 || || | |||||||||||||| ||||| ||||| Sbjct 564573 CAGTCTCTGGTCATGTTGATATAGTCATCGCTGGTCCA 564536 >seq192 Length=2194266 Score = 152 bits (168), Expect = 6e-32 Identities = 211/294 (72%), Gaps = 6/294 (2%) Strand=Plus/Plus Query 168153 AGAGTCAAGCACGTTTTTCCAGAAATCTTGCCTGATCCGAACGTGTTGAAGAGGCACATG 168212 || || | ||| | | |||| || ||||| || || || || || |||||||||||| || Sbjct 893928 AGGGTGAGGCAGGCTGTTCCTGAGATCTTCCCAGAACCAAAAGTATTGAAGAGGCACTTG 893987 Query 168213 AAGCAGCCTTCGTCCTCCACGGTGGTATTCCAAAATGTTAGCGTTGAGTTTCGGAGGCCC 168272 | || ||||| ||||||| |||||| ||||| || || | |||||||| ||| || Sbjct 893988 TAACACCCTTCATCCTCCAGGGTGGTGTTCCAGAAGGTAATGGTTGAGTTCTTGAGTTCC 894047 Query 168273 AACTGCGTTATGTTCACACGATCTTTATAAGGAGGTTGAACTACAACGCCGTGGTTCTCG 168332 | ||| || || || | || || || | ||| || || || || || ||||||| | Sbjct 894048 AGCTGGGTGATATTTATCTTGTCCTTGTAGGCAGGCTGGACCACGACCCCATGGTTCTTG 894107 Query 168333 CTGAAGGTGGCCATGTTCTCCGGGCTGGTGGCCTTTATCTTCTGCCAGGTTACTATCAGA 168392 ||||||||| ||||||| || ||||| || ||| | |||||||| || || |||| Sbjct 894108 CTGAAGGTGACCATGTTTTCTGGGCTAACGGGCTTGACTTTCTGCCATGTCACAATCAAG 894167 Query 168393 ACCTCTTTATCGG---TCTGCAGGGAACATCTCAGCGAAGCCGGAGTGTTCAGC 168443 | ||| |||| | ||||| || ||||| | ||||| || ||||||||| Sbjct 894168 A---CTTCCTCGGAATTTTGCAGAGAGCATCTTAAGGAAGCAGGCGTGTTCAGC 894218 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/196 (71%), Gaps = 3/196 (2%) Strand=Plus/Plus Query 167907 CCCAAATGTAGTACCTTGCATATCACCTCTCCGTTTCCTACTTGACTCTTTGGATCTTTT 167966 |||| || || |||| ||| | |||||| || || || |||||||| || ||||| Sbjct 891359 CCCAGGTGCAGCACCTGGCAGACCACCTCC---TTCCCCACCTGACTCTTGGGGTCTTTG 891415 Query 167967 ACTTGTAAAATGCTAGTTACACTTGTAGTTCCATTGCGATGTAAAACGGTTTTCGTGCTG 168026 || || | ||||| || ||| || || |||||| | || | | | || ||| Sbjct 891416 ACCTGGAGGATGCTCGTGACAGACGTGGTCCCATTGGGGTGCGAGAGAACCTCAGTACTG 891475 Query 168027 TTCTCAATCCCTGATCCTGCCACCTTCCAGAATATTACAGGAGCGGGTCGTGCTGTAGCA 168086 || ||||||||||| || | |||||||||| | || ||||| || || || || | ||| Sbjct 891476 TTTTCAATCCCTGACCCAGACACCTTCCAGGAGATCACAGGGGCTGGGCGGGCATTGGCA 891535 Query 168087 GAGCAGGTAATATTTA 168102 ||||| || ||||||| Sbjct 891536 GAGCAAGTGATATTTA 891551 >seq1384 Length=523537 Score = 98.7 bits (108), Expect = 1e-15 Identities = 138/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 176232 AGATATTTTACTAGGTCACGTGGCGAGTCATAATCATTAACATGTATAAATGCGTGTGGT 176291 ||||| || |||| |||| || |||| |||||| | || || || |||| | || | Sbjct 150372 AGATACTTGGCTAGCTCACTGGGAGAGTTATAATCTTCCACGTGAATGAATGAATCTGCT 150431 Query 176292 GGAATGTAGTTTTCATAATTTTGTCTGGAGGGTCCTAAAACTATTGGTACGGTACGTGCT 176351 ||||| || || |||||||||| || || || || | ||| | ||||| | | ||| Sbjct 150432 GGAATATAATTCTCATAATTTTCCCTAGACGGGCCCAGAACAACAGGTACAGAGCCAGCT 150491 Query 176352 AATAATGAGCGGTAGATCTTTTCTGAGATGTAGTCAGTGTGAATTGAGTTTTCAAAAGCT 176411 | || | |||| |||||||| |||||| || |||| |||||||||||||||| Sbjct 150492 AGAAAAGCATTATAGAGCTTTTCTGTGATGTAATCTTTGTGGATTGAGTTTTCAAAAGAA 150551 Query 176412 AAATAGAACTTACA 176425 | ||| || || || Sbjct 150552 AGATAAAATTTGCA 150565 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 576631396042920