Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ailuropoda_20melanoleuca_20[refseq_20GCF_5F000004335.2_202009-12-15]
81,467 sequences; 2,299,509,015 total letters
Query= NC_020474.2
Length=180421
Score E
Sequences producing significant alignments: (Bits) Value
seq810 360 2e-94
seq192 152 6e-32
seq1384 98.7 1e-15
>seq810
Length=940331
Score = 360 bits (398), Expect = 2e-94
Identities = 681/998 (68%), Gaps = 8/998 (1%)
Strand=Plus/Minus
Query 160052 CAGATGTTCGTCCAGACATTGGACGGCGAACACGTCAACGTCTTCGTCGAATTTATTTGC 160111
|||||| || |||| ||| |||| ||| || | ||||| ||| ||| || || || ||
Sbjct 565528 CAGATGCTCATCCAAACACTGGATGGCAAAGAGGTCAATGTCCATGTCAAACTTGTTGGC 565469
Query 160112 GAACAGATGGTGAGCGTTCTGTAGGATCCAGTGCACGTCTCCGGACCCGAACACGCAGAC 160171
|||| || || || ||| ||||||| || ||| || | ||||||||||| ||
Sbjct 565468 AAACAAGTGATGC---TTGCGTAACATCCAGTTCAAGTCACCTGCTCCGAACACGCACAC 565412
Query 160172 GGAACGTATGTGCACGCCGTTGCAAGGCGGGTACAGAGCTCCTTTCGCCACGTCACCTTC 160231
||||| | ||| || || ||||| || ||||| | || || || | || ||||||||
Sbjct 565411 AGAACGCACGTGGACCCCATTGCAGGGTGGGTAGGGGGCACCCTTGGAAACATCACCTTC 565352
Query 160232 GTAGTACTGCCACTTCACAAACCTGGCTATCGCCTGCATGTCGGAGGTGTCGTATTTGTA 160291
| |||||||||| || || ||||| || ||||| ||||||||||| |||| || || |
Sbjct 565351 GAAGTACTGCCATTTGACGAACCTTGCAATCGCGTGCATGTCGGACATGTCATACTTCTG 565292
Query 160292 CATCAGGGGAACGGCACCGGGAACGCCGGGCATACGCTGTAGGGTGGCCCACAGGTGTTC 160351
| |||| | || || || || | || || | ||| | |||||||| || | ||
Sbjct 565291 GCTTAGGGACAGGGAGCCCGGGACATCAGGGATCCTCTGGATAGTGGCCCAGAGATACTC 565232
Query 160352 GTCGGGGCTGTACGTGTCCTTAGACCATTCCATGAACTCTCCGATTAACCTGTCCCGCAG 160411
|| |||||||||||||| || | ||| ||||| |||| | |||| | | ||
Sbjct 565231 ATCCGGGCTGTACGTGTCTTTTGCCCACTCCATAAACTTTTGGATTTTTTCATTCTCTAG 565172
Query 160412 AACGTGAGTAACGTAGGATCTGGTCACGACAAAGTACGCGCTGCCGGAGAATATCGGTAT 160471
|| | ||||| || | || || || || || ||||| || || | ||| |
Sbjct 565171 CACATACCCCACGTACTTCCTACTGACCACGAAATAGGCACTGCCTGAAAACAGAGGTGT 565112
Query 160472 GGGTATAGGCGGCGTGTCTTTGTCCTGACCGGTGTTAGACACCACTCCTTTCACCAGCGC 160531
| ||| || |||||| || ||||| | || | ||| || || | |
Sbjct 565111 TTCAAGAGGAGGGAGCATTTTGTCAGTCCCCGTGTTCGTCAGCTTTCCGTTAACAACTGT 565052
Query 160532 GTGTCGCTTCTTCCACCTGACCATCTTGTGCGGTGGCATGCGTTCCGTCTCTAGACTGTT 160591
|| |||| |||||||| | | || | | ||||| | || || ||||| ||||
Sbjct 565051 GTAATGCTTTTTCCACCTTTCTTTTTTATTGGACGGCATTCTCTCAGTTTCTAGGTTGTT 564992
Query 160592 GGCACCGTCGAGCGATTTCAGCTGCTTGACGATCTCTAGGTTCGTCTTGAGCGGAAAGTC 160651
|||| ||||| || |||| || ||| || || | ||| || || | ||||||||
Sbjct 564991 TTCACCCATCAGCGACTTGAGCTTCTGGACAATTTCCAAGTTGGTTTTAATAGGAAAGTC 564932
Query 160652 GGTACCGCACAAGTTTATCACGTACTTCCATTTCGCGCTCAGGTCGTGCAG--GTCCCTC 160709
||||||| | ||||||| ||||||||| | ||| |||| || || || ||| |
Sbjct 564931 CATACCGCAAAGATTTATCAAGTACTTCCAGTCCGCACTCA--TCCTGTAGACGTCTTGC 564874
Query 160710 ATGCAATTAATATCTGCCTGCACGCGGCTCCAGGAAGCGTACACTACGTTCTCTAGTTTA 160769
||||| || | || ||||| || || ||||| || || ||||| || |||| || | |
Sbjct 564873 ATGCAGTTGAGGTCGGCCTGAACCCGACTCCAAGAGGCATACACCACACTCTCCAGCTGA 564814
Query 160770 CTGGCCACAAAGACGTTATCGAAACACGACACGATTCCCACCACCGCCAGAAAGAACATC 160829
|||||||||||||||||| ||| || ||| |||| || | |||||| || |||
Sbjct 564813 CTGGCCACAAAGACGTTACTGAAGCAGGACGCGATGCCAATCACCGCGGCCAAAAACGAA 564754
Query 160830 TTATCCGCCTTTCGGTCCACGTGCACGCAATACAGGTTCTGAGGCGCGTAGATGGCCCTG 160889
| | | ||||| ||||||||| | ||| || | ||||| ||| ||||||||||||
Sbjct 564753 TCGGCTGACTTTCTGTCCACGTGAATGCAGTAGAAATTCTGGGGCATGTAGATGGCCCTC 564694
Query 160890 AGCAACCTCTCGAACATCTCTATCTTATGATGGATCACGATAGAGTAGGCTATCGGAAAC 160949
|| | || || | ||| || || || || || | ||| || || |||||||| ||||||
Sbjct 564693 AGGAGCCGGTCAAGCATTTCGATTTTGTGGTGAACCACTATGGAATAGGCTATGGGAAAC 564634
Query 160950 TCGGTCTCCTCGCGACTCAGGGACCCGGTCAGGTACTTTCGCGTCTTGATAAAATAATCA 161009
|| | ||| || ||| || | | | | ||| || || |||||| ||| ||| |
Sbjct 564633 TCCGCCTCTTCCTTACTAAGTGGCTGCATGATGTATTTGCGTCGCTTGATGAAAGAATTA 564574
Query 161010 CAATCCCGCGTCATGTTGATATA-CGATCGCGCGTCCA 161046
|| || | |||||||||||||| ||||| |||||
Sbjct 564573 CAGTCTCTGGTCATGTTGATATAGTCATCGCTGGTCCA 564536
>seq192
Length=2194266
Score = 152 bits (168), Expect = 6e-32
Identities = 211/294 (72%), Gaps = 6/294 (2%)
Strand=Plus/Plus
Query 168153 AGAGTCAAGCACGTTTTTCCAGAAATCTTGCCTGATCCGAACGTGTTGAAGAGGCACATG 168212
|| || | ||| | | |||| || ||||| || || || || || |||||||||||| ||
Sbjct 893928 AGGGTGAGGCAGGCTGTTCCTGAGATCTTCCCAGAACCAAAAGTATTGAAGAGGCACTTG 893987
Query 168213 AAGCAGCCTTCGTCCTCCACGGTGGTATTCCAAAATGTTAGCGTTGAGTTTCGGAGGCCC 168272
| || ||||| ||||||| |||||| ||||| || || | |||||||| ||| ||
Sbjct 893988 TAACACCCTTCATCCTCCAGGGTGGTGTTCCAGAAGGTAATGGTTGAGTTCTTGAGTTCC 894047
Query 168273 AACTGCGTTATGTTCACACGATCTTTATAAGGAGGTTGAACTACAACGCCGTGGTTCTCG 168332
| ||| || || || | || || || | ||| || || || || || ||||||| |
Sbjct 894048 AGCTGGGTGATATTTATCTTGTCCTTGTAGGCAGGCTGGACCACGACCCCATGGTTCTTG 894107
Query 168333 CTGAAGGTGGCCATGTTCTCCGGGCTGGTGGCCTTTATCTTCTGCCAGGTTACTATCAGA 168392
||||||||| ||||||| || ||||| || ||| | |||||||| || || ||||
Sbjct 894108 CTGAAGGTGACCATGTTTTCTGGGCTAACGGGCTTGACTTTCTGCCATGTCACAATCAAG 894167
Query 168393 ACCTCTTTATCGG---TCTGCAGGGAACATCTCAGCGAAGCCGGAGTGTTCAGC 168443
| ||| |||| | ||||| || ||||| | ||||| || |||||||||
Sbjct 894168 A---CTTCCTCGGAATTTTGCAGAGAGCATCTTAAGGAAGCAGGCGTGTTCAGC 894218
Score = 95.1 bits (104), Expect = 1e-14
Identities = 139/196 (71%), Gaps = 3/196 (2%)
Strand=Plus/Plus
Query 167907 CCCAAATGTAGTACCTTGCATATCACCTCTCCGTTTCCTACTTGACTCTTTGGATCTTTT 167966
|||| || || |||| ||| | |||||| || || || |||||||| || |||||
Sbjct 891359 CCCAGGTGCAGCACCTGGCAGACCACCTCC---TTCCCCACCTGACTCTTGGGGTCTTTG 891415
Query 167967 ACTTGTAAAATGCTAGTTACACTTGTAGTTCCATTGCGATGTAAAACGGTTTTCGTGCTG 168026
|| || | ||||| || ||| || || |||||| | || | | | || |||
Sbjct 891416 ACCTGGAGGATGCTCGTGACAGACGTGGTCCCATTGGGGTGCGAGAGAACCTCAGTACTG 891475
Query 168027 TTCTCAATCCCTGATCCTGCCACCTTCCAGAATATTACAGGAGCGGGTCGTGCTGTAGCA 168086
|| ||||||||||| || | |||||||||| | || ||||| || || || || | |||
Sbjct 891476 TTTTCAATCCCTGACCCAGACACCTTCCAGGAGATCACAGGGGCTGGGCGGGCATTGGCA 891535
Query 168087 GAGCAGGTAATATTTA 168102
||||| || |||||||
Sbjct 891536 GAGCAAGTGATATTTA 891551
>seq1384
Length=523537
Score = 98.7 bits (108), Expect = 1e-15
Identities = 138/194 (71%), Gaps = 0/194 (0%)
Strand=Plus/Plus
Query 176232 AGATATTTTACTAGGTCACGTGGCGAGTCATAATCATTAACATGTATAAATGCGTGTGGT 176291
||||| || |||| |||| || |||| |||||| | || || || |||| | || |
Sbjct 150372 AGATACTTGGCTAGCTCACTGGGAGAGTTATAATCTTCCACGTGAATGAATGAATCTGCT 150431
Query 176292 GGAATGTAGTTTTCATAATTTTGTCTGGAGGGTCCTAAAACTATTGGTACGGTACGTGCT 176351
||||| || || |||||||||| || || || || | ||| | ||||| | | |||
Sbjct 150432 GGAATATAATTCTCATAATTTTCCCTAGACGGGCCCAGAACAACAGGTACAGAGCCAGCT 150491
Query 176352 AATAATGAGCGGTAGATCTTTTCTGAGATGTAGTCAGTGTGAATTGAGTTTTCAAAAGCT 176411
| || | |||| |||||||| |||||| || |||| ||||||||||||||||
Sbjct 150492 AGAAAAGCATTATAGAGCTTTTCTGTGATGTAATCTTTGTGGATTGAGTTTTCAAAAGAA 150551
Query 176412 AAATAGAACTTACA 176425
| ||| || || ||
Sbjct 150552 AGATAAAATTTGCA 150565
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 576631396042920
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |