Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ailuropoda_20melanoleuca_20[refseq_20GCF_5F000004335.2_202009-12-15] 81,467 sequences; 2,299,509,015 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq1207 89.7 2e-12 >seq1207 Length=627123 Score = 89.7 bits (98), Expect = 2e-12 Identities = 106/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 448887 GCTACGCCCGAGGAAATCAAGAAGGCATATAAACGACTCGCAATTAAACATCATCCTGAT 448946 ||| | |||||||| || || ||||| ||| | | ||| ||||| || |||||| Sbjct 220221 GCTTCACCCGAGGACATTAAAAAGGCTTATCGTAAAGTGGCACTTAAATGGCACCCTGAT 220162 Query 448947 AAAAATCCAGATAATAAAGCAGAGGCAGAGGAGAAATTCAAAGAGATTTCTCAAGCTTAT 449006 ||||||||||| ||||||| ||| || ||| ||||||||||| | || | || ||| Sbjct 220161 AAAAATCCAGAAAATAAAGAAGAAGCTGAGAGAAAATTCAAAGAAGTAGCTGAGGCATAT 220102 Query 449007 GAAATTGTAACAAATAAAGAAAAA 449030 ||| | || | ||||| |||||| Sbjct 220101 GAAGTATTATCGAATAATGAAAAA 220078 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1470281322768379