Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ailuropoda_20melanoleuca_20[refseq_20GCF_5F000004335.2_202009-12-15] 81,467 sequences; 2,299,509,015 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq17 114 1e-20 seq456 87.8 2e-12 >seq17 Length=4663558 Score = 114 bits (126), Expect = 1e-20 Identities = 169/239 (71%), Gaps = 9/239 (4%) Strand=Plus/Minus Query 24701 ACGATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCC 24760 || ||||||||||| | || || | || ||||| || || || || || || || | Sbjct 4172751 ACAATGCAGATCTTCGTGAAGACCTTGACAGGTAAGACCATCACCCTGGAGGTGGAGCCA 4172692 Query 24761 ACCGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGA-----AGGA----ATA 24811 | |||||| | || | || || |||||||| |||||| | |||| || Sbjct 4172691 AGCGACACCATCGAGAACGTCAAGGCGAAGATCCAGGACAAACAGGACAAGGAGGGCATC 4172632 Query 24812 CCTCCCGATCAACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATG 24871 || ||||| || || | ||||||||||| |||||||||||||| ||| | | | | || Sbjct 4172631 CCCCCCGACCAGCAGAGGTTGATCTTTGCGGGGAAACAGCTGGAAGATGGGCGCACCCTG 4172572 Query 24872 TCAGATTATAACATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 || || || ||||| || |||||||| || || |||||||| |||| ||| | ||||| Sbjct 4172571 TCTGACTACAACATCCAGAAGGAATCCACTCTGCACTTGGTCCTGCGCTTGAGGGGAGG 4172513 >seq456 Length=1409724 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || || || || || || || || || || || || || ||| Sbjct 1113183 ATGCAGATCTTCGTGAAGACCCTGACTGGCAAGACCATCACCCTGGAGGTGGAGCCCAGT 1113242 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || ||||||||||| ||||| || || || || || || Sbjct 1113243 GACACCATCGAGAATGTGAAGGCCAAGATCCAAGATAAAGAGGGCATCCCCCCTGACCAG 1113302 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || | | |||||||| || || |||||||| ||| | | | || ||||| ||| Sbjct 1113303 CAGAGGCTCATCTTTGCAGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGATTACAAC 1113362 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931 || || || || ||||| || ||| |||| |||| || | || ||| Sbjct 1113363 ATCCAGAAAGAGTCGACCCTGCACCTGGTCCTGCGCCTGAGAGGTGGC 1113410 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || || || || || || || || || || || || || ||| Sbjct 1113411 ATGCAGATCTTCGTGAAGACCCTGACTGGCAAGACCATCACCCTGGAGGTGGAGCCCAGT 1113470 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || ||||||||||| ||||| || || || || || || Sbjct 1113471 GACACCATCGAGAATGTGAAGGCCAAGATCCAAGATAAAGAGGGCATCCCCCCTGACCAG 1113530 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || | | |||||||| || || |||||||| ||| | | | || ||||| ||| Sbjct 1113531 CAGAGGCTCATCTTTGCAGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGATTACAAC 1113590 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931 || || || || ||||| || ||| |||| |||| || | || ||| Sbjct 1113591 ATCCAGAAAGAGTCGACCCTGCACCTGGTCCTGCGCCTGAGAGGTGGC 1113638 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || || || || || || || || || || || || || ||| Sbjct 1113639 ATGCAGATCTTCGTGAAGACCCTGACTGGCAAGACCATCACCCTGGAGGTGGAGCCCAGT 1113698 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || ||||||||||| ||||| || || || || || || Sbjct 1113699 GACACCATCGAGAATGTGAAGGCCAAGATCCAAGATAAAGAGGGCATCCCCCCTGACCAG 1113758 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || | | |||||||| || || |||||||| ||| | | | || ||||| ||| Sbjct 1113759 CAGAGGCTCATCTTTGCAGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGATTACAAC 1113818 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931 || || || || ||||| || ||| |||| |||| || | || ||| Sbjct 1113819 ATCCAGAAAGAGTCGACCCTGCACCTGGTCCTGCGCCTGAGAGGTGGC 1113866 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || || || || || || || || || || || || || ||| Sbjct 1113867 ATGCAGATCTTCGTGAAGACCCTGACTGGCAAGACCATCACCCTGGAGGTGGAGCCCAGT 1113926 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || ||||||||||| ||||| || || || || || || Sbjct 1113927 GACACCATCGAGAATGTGAAGGCCAAGATCCAAGATAAAGAGGGCATCCCCCCTGACCAG 1113986 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || | | |||||||| || || |||||||| ||| | | | || ||||| ||| Sbjct 1113987 CAGAGGCTCATCTTTGCAGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGATTACAAC 1114046 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931 || || || || ||||| || ||| |||| |||| || | || ||| Sbjct 1114047 ATCCAGAAAGAGTCGACCCTGCACCTGGTCCTGCGCCTGAGAGGTGGC 1114094 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || || || || || || || || || || || || || ||| Sbjct 1114095 ATGCAGATCTTCGTGAAGACCCTGACTGGCAAGACCATCACCCTGGAGGTGGAGCCCAGT 1114154 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || ||||||||||| ||||| || || || || || || Sbjct 1114155 GACACCATCGAGAATGTGAAGGCCAAGATCCAAGATAAAGAGGGCATCCCCCCTGACCAG 1114214 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || | | |||||||| || || |||||||| ||| | | | || ||||| ||| Sbjct 1114215 CAGAGGCTCATCTTTGCAGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGATTACAAC 1114274 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGT 24912 || || || || ||||| || ||| |||| Sbjct 1114275 ATCCAGAAAGAGTCGACTCTCCACCTGGT 1114303 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449439452402760