Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ailuropoda_20melanoleuca_20[refseq_20GCF_5F000004335.2_202009-12-15]
81,467 sequences; 2,299,509,015 total letters
Query= NC_021923.1
Length=140633
Score E
Sequences producing significant alignments: (Bits) Value
seq17 114 1e-20
seq456 87.8 2e-12
>seq17
Length=4663558
Score = 114 bits (126), Expect = 1e-20
Identities = 169/239 (71%), Gaps = 9/239 (4%)
Strand=Plus/Minus
Query 24701 ACGATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCC 24760
|| ||||||||||| | || || | || ||||| || || || || || || || |
Sbjct 4172751 ACAATGCAGATCTTCGTGAAGACCTTGACAGGTAAGACCATCACCCTGGAGGTGGAGCCA 4172692
Query 24761 ACCGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGA-----AGGA----ATA 24811
| |||||| | || | || || |||||||| |||||| | |||| ||
Sbjct 4172691 AGCGACACCATCGAGAACGTCAAGGCGAAGATCCAGGACAAACAGGACAAGGAGGGCATC 4172632
Query 24812 CCTCCCGATCAACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATG 24871
|| ||||| || || | ||||||||||| |||||||||||||| ||| | | | | ||
Sbjct 4172631 CCCCCCGACCAGCAGAGGTTGATCTTTGCGGGGAAACAGCTGGAAGATGGGCGCACCCTG 4172572
Query 24872 TCAGATTATAACATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930
|| || || ||||| || |||||||| || || |||||||| |||| ||| | |||||
Sbjct 4172571 TCTGACTACAACATCCAGAAGGAATCCACTCTGCACTTGGTCCTGCGCTTGAGGGGAGG 4172513
>seq456
Length=1409724
Score = 87.8 bits (96), Expect = 2e-12
Identities = 156/228 (68%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763
||||||||||| | || || || || || || || || || || || || || |||
Sbjct 1113183 ATGCAGATCTTCGTGAAGACCCTGACTGGCAAGACCATCACCCTGGAGGTGGAGCCCAGT 1113242
Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823
||||| | || | || || ||||||||||| ||||| || || || || || ||
Sbjct 1113243 GACACCATCGAGAATGTGAAGGCCAAGATCCAAGATAAAGAGGGCATCCCCCCTGACCAG 1113302
Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883
|| | | |||||||| || || |||||||| ||| | | | || ||||| |||
Sbjct 1113303 CAGAGGCTCATCTTTGCAGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGATTACAAC 1113362
Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931
|| || || || ||||| || ||| |||| |||| || | || |||
Sbjct 1113363 ATCCAGAAAGAGTCGACCCTGCACCTGGTCCTGCGCCTGAGAGGTGGC 1113410
Score = 87.8 bits (96), Expect = 2e-12
Identities = 156/228 (68%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763
||||||||||| | || || || || || || || || || || || || || |||
Sbjct 1113411 ATGCAGATCTTCGTGAAGACCCTGACTGGCAAGACCATCACCCTGGAGGTGGAGCCCAGT 1113470
Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823
||||| | || | || || ||||||||||| ||||| || || || || || ||
Sbjct 1113471 GACACCATCGAGAATGTGAAGGCCAAGATCCAAGATAAAGAGGGCATCCCCCCTGACCAG 1113530
Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883
|| | | |||||||| || || |||||||| ||| | | | || ||||| |||
Sbjct 1113531 CAGAGGCTCATCTTTGCAGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGATTACAAC 1113590
Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931
|| || || || ||||| || ||| |||| |||| || | || |||
Sbjct 1113591 ATCCAGAAAGAGTCGACCCTGCACCTGGTCCTGCGCCTGAGAGGTGGC 1113638
Score = 87.8 bits (96), Expect = 2e-12
Identities = 156/228 (68%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763
||||||||||| | || || || || || || || || || || || || || |||
Sbjct 1113639 ATGCAGATCTTCGTGAAGACCCTGACTGGCAAGACCATCACCCTGGAGGTGGAGCCCAGT 1113698
Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823
||||| | || | || || ||||||||||| ||||| || || || || || ||
Sbjct 1113699 GACACCATCGAGAATGTGAAGGCCAAGATCCAAGATAAAGAGGGCATCCCCCCTGACCAG 1113758
Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883
|| | | |||||||| || || |||||||| ||| | | | || ||||| |||
Sbjct 1113759 CAGAGGCTCATCTTTGCAGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGATTACAAC 1113818
Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931
|| || || || ||||| || ||| |||| |||| || | || |||
Sbjct 1113819 ATCCAGAAAGAGTCGACCCTGCACCTGGTCCTGCGCCTGAGAGGTGGC 1113866
Score = 87.8 bits (96), Expect = 2e-12
Identities = 156/228 (68%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763
||||||||||| | || || || || || || || || || || || || || |||
Sbjct 1113867 ATGCAGATCTTCGTGAAGACCCTGACTGGCAAGACCATCACCCTGGAGGTGGAGCCCAGT 1113926
Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823
||||| | || | || || ||||||||||| ||||| || || || || || ||
Sbjct 1113927 GACACCATCGAGAATGTGAAGGCCAAGATCCAAGATAAAGAGGGCATCCCCCCTGACCAG 1113986
Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883
|| | | |||||||| || || |||||||| ||| | | | || ||||| |||
Sbjct 1113987 CAGAGGCTCATCTTTGCAGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGATTACAAC 1114046
Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931
|| || || || ||||| || ||| |||| |||| || | || |||
Sbjct 1114047 ATCCAGAAAGAGTCGACCCTGCACCTGGTCCTGCGCCTGAGAGGTGGC 1114094
Score = 84.2 bits (92), Expect = 2e-11
Identities = 144/209 (69%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763
||||||||||| | || || || || || || || || || || || || || |||
Sbjct 1114095 ATGCAGATCTTCGTGAAGACCCTGACTGGCAAGACCATCACCCTGGAGGTGGAGCCCAGT 1114154
Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823
||||| | || | || || ||||||||||| ||||| || || || || || ||
Sbjct 1114155 GACACCATCGAGAATGTGAAGGCCAAGATCCAAGATAAAGAGGGCATCCCCCCTGACCAG 1114214
Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883
|| | | |||||||| || || |||||||| ||| | | | || ||||| |||
Sbjct 1114215 CAGAGGCTCATCTTTGCAGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGATTACAAC 1114274
Query 24884 ATTCAAAAGGAATCGACACTACACTTGGT 24912
|| || || || ||||| || ||| ||||
Sbjct 1114275 ATCCAGAAAGAGTCGACTCTCCACCTGGT 1114303
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 449439452402760
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |