Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ailuropoda_20melanoleuca_20[refseq_20GCF_5F000004335.2_202009-12-15]
81,467 sequences; 2,299,509,015 total letters
Query= NC_022646.1
Length=101818
Score E
Sequences producing significant alignments: (Bits) Value
seq17 118 7e-22
seq456 113 3e-20
seq11 87.8 1e-12
seq1889 86.0 4e-12
>seq17
Length=4663558
Score = 118 bits (130), Expect = 7e-22
Identities = 168/236 (71%), Gaps = 9/236 (4%)
Strand=Plus/Plus
Query 34751 CCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGAT 34810
||||||||||| | |||||||| ||| | ||| |||||||| ||||| ||||| ||
Sbjct 4172513 CCTCCCCTCAAGCGCAGGACCAAGTGCAGAGTGGATTCCTTCTGGATGTTGTAGTCAGAC 4172572
Query 34811 AGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGC 34870
||| ||||| |||| ||||| || || || || ||||||| | |||||||| | ||
Sbjct 4172573 AGGGTGCGCCCATCTTCCAGCTGTTTCCCCGCAAAGATCAACCTCTGCTGGTCGGGGGGG 4172632
Query 34871 ACCCCCTCCTTGTC--GTTT-------ATTTTTTGTTTGACGGATGCTATCGATTCATTG 34921
| ||||||||||| |||| || || |||||| | || | || |
Sbjct 4172633 ATGCCCTCCTTGTCCTGTTTGTCCTGGATCTTCGCCTTGACGTTCTCGATGGTGTCGCTT 4172692
Query 34922 GCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977
| ||| || || | ||| |||||||| || || | |||||| || |||||||||||
Sbjct 4172693 GGCTCCACCTCCAGGGTGATGGTCTTACCTGTCAAGGTCTTCACGAAGATCTGCAT 4172748
>seq456
Length=1409724
Score = 113 bits (124), Expect = 3e-20
Identities = 164/230 (71%), Gaps = 4/230 (2%)
Strand=Plus/Minus
Query 34751 CCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGAT 34810
|| || |||| | |||||||||||| | ||| ||| ||||| ||||| || || ||
Sbjct 1113637 CCACCTCTCAGGCGCAGGACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAATCAGAA 1113578
Query 34811 AGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGC 34870
|| |||| |||| ||||| ||||| || || ||||| || | |||||||| | ||
Sbjct 1113577 AGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGGGGG 1113518
Query 34871 ACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCTCGA 34928
| ||||| || || | || || || || || || || | ||| ||| ||| |
Sbjct 1113517 ATGCCCTCTTTATCTTGGATCTTGGCCTTCAC--ATTCTCGATGGTGTCACTGGGCTCCA 1113460
Query 34929 CATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978
| || | ||| |||||||| || || |||||||| || ||||||||||||
Sbjct 1113459 CCTCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCATG 1113410
Score = 113 bits (124), Expect = 3e-20
Identities = 164/230 (71%), Gaps = 4/230 (2%)
Strand=Plus/Minus
Query 34751 CCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGAT 34810
|| || |||| | |||||||||||| | ||| ||| ||||| ||||| || || ||
Sbjct 1113865 CCACCTCTCAGGCGCAGGACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAATCAGAA 1113806
Query 34811 AGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGC 34870
|| |||| |||| ||||| ||||| || || ||||| || | |||||||| | ||
Sbjct 1113805 AGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGGGGG 1113746
Query 34871 ACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCTCGA 34928
| ||||| || || | || || || || || || || | ||| ||| ||| |
Sbjct 1113745 ATGCCCTCTTTATCTTGGATCTTGGCCTTCAC--ATTCTCGATGGTGTCACTGGGCTCCA 1113688
Query 34929 CATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978
| || | ||| |||||||| || || |||||||| || ||||||||||||
Sbjct 1113687 CCTCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCATG 1113638
Score = 113 bits (124), Expect = 3e-20
Identities = 164/230 (71%), Gaps = 4/230 (2%)
Strand=Plus/Minus
Query 34751 CCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGAT 34810
|| || |||| | |||||||||||| | ||| ||| ||||| ||||| || || ||
Sbjct 1114093 CCACCTCTCAGGCGCAGGACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAATCAGAA 1114034
Query 34811 AGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGC 34870
|| |||| |||| ||||| ||||| || || ||||| || | |||||||| | ||
Sbjct 1114033 AGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGGGGG 1113974
Query 34871 ACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCTCGA 34928
| ||||| || || | || || || || || || || | ||| ||| ||| |
Sbjct 1113973 ATGCCCTCTTTATCTTGGATCTTGGCCTTCAC--ATTCTCGATGGTGTCACTGGGCTCCA 1113916
Query 34929 CATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978
| || | ||| |||||||| || || |||||||| || ||||||||||||
Sbjct 1113915 CCTCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCATG 1113866
Score = 111 bits (122), Expect = 1e-19
Identities = 163/229 (71%), Gaps = 4/229 (2%)
Strand=Plus/Minus
Query 34751 CCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGAT 34810
|| || |||| | |||||||||||| | ||| ||| ||||| ||||| || || ||
Sbjct 1113409 CCACCTCTCAGGCGCAGGACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAATCAGAA 1113350
Query 34811 AGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGC 34870
|| |||| |||| ||||| ||||| || || ||||| || | |||||||| | ||
Sbjct 1113349 AGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGGGGG 1113290
Query 34871 ACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCTCGA 34928
| ||||| || || | || || || || || || || | ||| ||| ||| |
Sbjct 1113289 ATGCCCTCTTTATCTTGGATCTTGGCCTTCAC--ATTCTCGATGGTGTCACTGGGCTCCA 1113232
Query 34929 CATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977
| || | ||| |||||||| || || |||||||| || |||||||||||
Sbjct 1113231 CCTCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 1113183
Score = 104 bits (114), Expect = 2e-17
Identities = 162/230 (70%), Gaps = 4/230 (2%)
Strand=Plus/Minus
Query 34751 CCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGAT 34810
|| ||||||| | || |||||||| | || ||| ||||| ||||| || || ||
Sbjct 1114321 CCACCCCTCAGACGGAGAACCAGGTGGAGAGTCGACTCTTTCTGGATGTTGTAATCAGAA 1114262
Query 34811 AGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGC 34870
|| |||| |||| ||||| ||||| || || ||||| || | |||||||| | ||
Sbjct 1114261 AGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGGGGG 1114202
Query 34871 ACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCTCGA 34928
| ||||| || || | || || || || || || || | ||| ||| ||| |
Sbjct 1114201 ATGCCCTCTTTATCTTGGATCTTGGCCTTCAC--ATTCTCGATGGTGTCACTGGGCTCCA 1114144
Query 34929 CATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978
| || | ||| |||||||| || || |||||||| || ||||||||||||
Sbjct 1114143 CCTCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCATG 1114094
>seq11
Length=5147107
Score = 87.8 bits (96), Expect = 1e-12
Identities = 84/106 (79%), Gaps = 4/106 (4%)
Strand=Plus/Minus
Query 34874 CCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCTCGACAT 34931
||||||||||| | ||||| |||||| || || || | ||| ||| |||||| |
Sbjct 1825400 CCCTCCTTGTCTTGGATTTTGGCTTTGAC--ATTCTCAATGGTGTCACTGGGCTCGACCT 1825343
Query 34932 CAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977
||| ||| |||||||| ||||| |||||||| ||||||||||||||
Sbjct 1825342 CAAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACAAAGATCTGCAT 1825297
>seq1889
Length=305708
Score = 86.0 bits (94), Expect = 4e-12
Identities = 100/134 (75%), Gaps = 2/134 (1%)
Strand=Plus/Plus
Query 34840 GGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTT 34899
||| || ||||| | ||||||||| |||| | ||||||||||| | ||||| |||
Sbjct 239088 GGCCAAAATCAGACATTGCTGGTCAGGCGGGATGCCCTCCTTGTCCTGGATTTTGGCTTT 239147
Query 34900 GACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGT 34959
||| | || | | ||| ||| |||||| |||| ||| |||||||| ||| | ||||
Sbjct 239148 GAC--AGTCTGTGGTGTCACTGGGCTCGACCTCAAGGGTGATGGTCTTGCCCATCAGGGG 239205
Query 34960 CTTTACAAAGATCT 34973
||| |||||||||
Sbjct 239206 CTTCCCAAAGATCT 239219
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 325369426438073
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