Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ailuropoda_20melanoleuca_20[refseq_20GCF_5F000004335.2_202009-12-15] 81,467 sequences; 2,299,509,015 total letters Query= NC_022646.1 Length=101818 Score E Sequences producing significant alignments: (Bits) Value seq17 118 7e-22 seq456 113 3e-20 seq11 87.8 1e-12 seq1889 86.0 4e-12 >seq17 Length=4663558 Score = 118 bits (130), Expect = 7e-22 Identities = 168/236 (71%), Gaps = 9/236 (4%) Strand=Plus/Plus Query 34751 CCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGAT 34810 ||||||||||| | |||||||| ||| | ||| |||||||| ||||| ||||| || Sbjct 4172513 CCTCCCCTCAAGCGCAGGACCAAGTGCAGAGTGGATTCCTTCTGGATGTTGTAGTCAGAC 4172572 Query 34811 AGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGC 34870 ||| ||||| |||| ||||| || || || || ||||||| | |||||||| | || Sbjct 4172573 AGGGTGCGCCCATCTTCCAGCTGTTTCCCCGCAAAGATCAACCTCTGCTGGTCGGGGGGG 4172632 Query 34871 ACCCCCTCCTTGTC--GTTT-------ATTTTTTGTTTGACGGATGCTATCGATTCATTG 34921 | ||||||||||| |||| || || |||||| | || | || | Sbjct 4172633 ATGCCCTCCTTGTCCTGTTTGTCCTGGATCTTCGCCTTGACGTTCTCGATGGTGTCGCTT 4172692 Query 34922 GCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 | ||| || || | ||| |||||||| || || | |||||| || ||||||||||| Sbjct 4172693 GGCTCCACCTCCAGGGTGATGGTCTTACCTGTCAAGGTCTTCACGAAGATCTGCAT 4172748 >seq456 Length=1409724 Score = 113 bits (124), Expect = 3e-20 Identities = 164/230 (71%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 34751 CCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGAT 34810 || || |||| | |||||||||||| | ||| ||| ||||| ||||| || || || Sbjct 1113637 CCACCTCTCAGGCGCAGGACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAATCAGAA 1113578 Query 34811 AGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGC 34870 || |||| |||| ||||| ||||| || || ||||| || | |||||||| | || Sbjct 1113577 AGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGGGGG 1113518 Query 34871 ACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCTCGA 34928 | ||||| || || | || || || || || || || | ||| ||| ||| | Sbjct 1113517 ATGCCCTCTTTATCTTGGATCTTGGCCTTCAC--ATTCTCGATGGTGTCACTGGGCTCCA 1113460 Query 34929 CATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978 | || | ||| |||||||| || || |||||||| || |||||||||||| Sbjct 1113459 CCTCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCATG 1113410 Score = 113 bits (124), Expect = 3e-20 Identities = 164/230 (71%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 34751 CCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGAT 34810 || || |||| | |||||||||||| | ||| ||| ||||| ||||| || || || Sbjct 1113865 CCACCTCTCAGGCGCAGGACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAATCAGAA 1113806 Query 34811 AGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGC 34870 || |||| |||| ||||| ||||| || || ||||| || | |||||||| | || Sbjct 1113805 AGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGGGGG 1113746 Query 34871 ACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCTCGA 34928 | ||||| || || | || || || || || || || | ||| ||| ||| | Sbjct 1113745 ATGCCCTCTTTATCTTGGATCTTGGCCTTCAC--ATTCTCGATGGTGTCACTGGGCTCCA 1113688 Query 34929 CATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978 | || | ||| |||||||| || || |||||||| || |||||||||||| Sbjct 1113687 CCTCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCATG 1113638 Score = 113 bits (124), Expect = 3e-20 Identities = 164/230 (71%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 34751 CCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGAT 34810 || || |||| | |||||||||||| | ||| ||| ||||| ||||| || || || Sbjct 1114093 CCACCTCTCAGGCGCAGGACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAATCAGAA 1114034 Query 34811 AGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGC 34870 || |||| |||| ||||| ||||| || || ||||| || | |||||||| | || Sbjct 1114033 AGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGGGGG 1113974 Query 34871 ACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCTCGA 34928 | ||||| || || | || || || || || || || | ||| ||| ||| | Sbjct 1113973 ATGCCCTCTTTATCTTGGATCTTGGCCTTCAC--ATTCTCGATGGTGTCACTGGGCTCCA 1113916 Query 34929 CATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978 | || | ||| |||||||| || || |||||||| || |||||||||||| Sbjct 1113915 CCTCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCATG 1113866 Score = 111 bits (122), Expect = 1e-19 Identities = 163/229 (71%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 34751 CCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGAT 34810 || || |||| | |||||||||||| | ||| ||| ||||| ||||| || || || Sbjct 1113409 CCACCTCTCAGGCGCAGGACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAATCAGAA 1113350 Query 34811 AGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGC 34870 || |||| |||| ||||| ||||| || || ||||| || | |||||||| | || Sbjct 1113349 AGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGGGGG 1113290 Query 34871 ACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCTCGA 34928 | ||||| || || | || || || || || || || | ||| ||| ||| | Sbjct 1113289 ATGCCCTCTTTATCTTGGATCTTGGCCTTCAC--ATTCTCGATGGTGTCACTGGGCTCCA 1113232 Query 34929 CATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 | || | ||| |||||||| || || |||||||| || ||||||||||| Sbjct 1113231 CCTCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 1113183 Score = 104 bits (114), Expect = 2e-17 Identities = 162/230 (70%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 34751 CCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGAT 34810 || ||||||| | || |||||||| | || ||| ||||| ||||| || || || Sbjct 1114321 CCACCCCTCAGACGGAGAACCAGGTGGAGAGTCGACTCTTTCTGGATGTTGTAATCAGAA 1114262 Query 34811 AGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGC 34870 || |||| |||| ||||| ||||| || || ||||| || | |||||||| | || Sbjct 1114261 AGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGGGGG 1114202 Query 34871 ACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCTCGA 34928 | ||||| || || | || || || || || || || | ||| ||| ||| | Sbjct 1114201 ATGCCCTCTTTATCTTGGATCTTGGCCTTCAC--ATTCTCGATGGTGTCACTGGGCTCCA 1114144 Query 34929 CATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978 | || | ||| |||||||| || || |||||||| || |||||||||||| Sbjct 1114143 CCTCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCATG 1114094 >seq11 Length=5147107 Score = 87.8 bits (96), Expect = 1e-12 Identities = 84/106 (79%), Gaps = 4/106 (4%) Strand=Plus/Minus Query 34874 CCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCTCGACAT 34931 ||||||||||| | ||||| |||||| || || || | ||| ||| |||||| | Sbjct 1825400 CCCTCCTTGTCTTGGATTTTGGCTTTGAC--ATTCTCAATGGTGTCACTGGGCTCGACCT 1825343 Query 34932 CAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 ||| ||| |||||||| ||||| |||||||| |||||||||||||| Sbjct 1825342 CAAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACAAAGATCTGCAT 1825297 >seq1889 Length=305708 Score = 86.0 bits (94), Expect = 4e-12 Identities = 100/134 (75%), Gaps = 2/134 (1%) Strand=Plus/Plus Query 34840 GGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTT 34899 ||| || ||||| | ||||||||| |||| | ||||||||||| | ||||| ||| Sbjct 239088 GGCCAAAATCAGACATTGCTGGTCAGGCGGGATGCCCTCCTTGTCCTGGATTTTGGCTTT 239147 Query 34900 GACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGT 34959 ||| | || | | ||| ||| |||||| |||| ||| |||||||| ||| | |||| Sbjct 239148 GAC--AGTCTGTGGTGTCACTGGGCTCGACCTCAAGGGTGATGGTCTTGCCCATCAGGGG 239205 Query 34960 CTTTACAAAGATCT 34973 ||| ||||||||| Sbjct 239206 CTTCCCAAAGATCT 239219 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 325369426438073