Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ailuropoda_20melanoleuca_20[refseq_20GCF_5F000004335.2_202009-12-15] 81,467 sequences; 2,299,509,015 total letters Query= NC_023442.1 Length=120420 Score E Sequences producing significant alignments: (Bits) Value seq456 104 2e-17 seq17 102 6e-17 >seq456 Length=1409724 Score = 104 bits (114), Expect = 2e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 || || |||| ||||| |||| || || || || ||||| || ||||| ||||| | | Sbjct 1113409 CCACCTCTCAGGCGCAGGACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAATCAGAA 1113350 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | ||||| ||| || || || ||||| ||| | || | || ||||| || || || Sbjct 1113349 AGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGGGGG 1113290 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739 || |||||||| ||||| | || || ||| | || | |||||| | || || Sbjct 1113289 ATGCCCTCTTTATCTTGGATCTTGGCCTTCACATTCTCGATGGTGTCACTGGGCTCCACC 1113230 Query 29740 TCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATTTT 29789 || || || || || |||||||| | ||| || || || ||||||||||| Sbjct 1113229 TCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCATTTT 1113180 >seq17 Length=4663558 Score = 102 bits (112), Expect = 6e-17 Identities = 165/237 (70%), Gaps = 9/237 (4%) Strand=Plus/Plus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 ||||||||||| ||||| ||||| || || |||||||| || || ||||| || || | Sbjct 4172513 CCTCCCCTCAAGCGCAGGACCAAGTGCAGAGTGGATTCCTTCTGGATGTTGTAGTCAGAC 4172572 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | |||||| ||| || || ||||| || ||| | ||||| || ||||| || || || Sbjct 4172573 AGGGTGCGCCCATCTTCCAGCTGTTTCCCCGCAAAGATCAACCTCTGCTGGTCGGGGGGG 4172632 Query 29680 ATACCCTCTTTGTCTTGT--------AATTTTTG-TTTGACAGTTTCTACAGTGTCAGAA 29730 || ||||| ||||| ||| || || | ||||| | || | ||||| Sbjct 4172633 ATGCCCTCCTTGTCCTGTTTGTCCTGGATCTTCGCCTTGACGTTCTCGATGGTGTCGCTT 4172692 Query 29731 AGTTCTACTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATT 29787 | || || || || || || || || || || ||||| || || || ||||||||| Sbjct 4172693 GGCTCCACCTCCAGGGTGATGGTCTTACCTGTCAAGGTCTTCACGAAGATCTGCATT 4172749 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 384836723921847