Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ailuropoda_20melanoleuca_20[refseq_20GCF_5F000004335.2_202009-12-15] 81,467 sequences; 2,299,509,015 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq3007 214 1e-49 seq41 145 6e-29 seq870 100 2e-15 seq138 100 2e-15 >seq3007 Length=51886 Score = 214 bits (236), Expect = 1e-49 Identities = 937/1461 (64%), Gaps = 24/1461 (2%) Strand=Plus/Plus Query 281377 ATTATTAGTAATAGTAATATTCTTGGATTTGTTTGTTGATTTATCAGCGGCAGTCACATT 281436 || ||| || || || || || |||| ||| ||| || || ||| || ||||| Sbjct 38388 ATCATTGGTGATGGTGATCTTATTGGCCTTGCCTGTGCTCTTGTCCATGGCTGTTACATT 38447 Query 281437 AAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACCCCTCTCTGAGC 281496 ||||||||||||||||| | ||||| || || ||||| ||||| || || || | || Sbjct 38448 GAGAATACCATTGGCATCAATGTCAAAGGTCACCTCAATCTGAGGCACTCCCCTGGGTGC 38507 Query 281497 AGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTAGTGAATTTTCG 281556 ||| ||||| || || | ||| ||||| || |||||| || | || Sbjct 38508 AGGAGGGATTCCAGTCAGGTCAAACCGCCCCAGGAGGTTGTTATCTCGGGTCATGGCTCT 38567 Query 281557 TTCACCCTCGAAAATTTGGATAGTAACTACAGTTTGATTATCTGAATAAGTTGTAAATAC 281616 || ||||| | | ||||| || ||| || ||||||||||| || || || | Sbjct 38568 CTCGCCCTCATACACCTGGATCAATACCCCAGGCTGGTTATCTGAATAGGTGGTGAAGA- 38626 Query 281617 TCTGGATTTT-TTACAAGGAATTGTTGTGTTTCTATCAATAATATTGGTCATAATACCAC 281675 |||| | | || || || || | ||| | | || | ||||| | ||| | Sbjct 38627 TCTGCGTCTGCTTGGTGGGGATGGTGGAGTTGCGCTTGATCAGGACTGTCATGACACCTC 38686 Query 281676 CAGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACAATATTTTGAAGTT 281735 |||| ||||| || || || || | |||| ||||| | | | | || || | | Sbjct 38687 CAGCCGTTTCCAACCCTAGGGACAAGGGAGCCACATCCAACAAAAGCAGATCCTGTACCT 38746 Query 281736 TTTCATCAGTTTGACCAA-CAAGAATAGCTGCTTGAATAGCAGCACCATATGCAACAGCT 281794 ||||| | | || | ||||| | ||||| || | || || || || || || || Sbjct 38747 TTTCAGACTTGTCCCCCATCAAGA-TGGCTGCCTGCACTGCCGCCCCGTAGGCTACCGCC 38805 Query 281795 TCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAAAAATTTGAAAGAAGTTGT 281854 |||||||| || | | | || || | |||||| || | | || || | Sbjct 38806 TCATCAGGGTTGATGCTCTTGTTGAGATCACGACCATTAAAGTAGTCCTGCAGCAGCC-T 38864 Query 281855 CTTA-CCTTAGGAATACGAGATGATCCTCCAACTAATACAATTTCATGCACCTGTGATTT 281913 || | ||||||| ||||||| || || || ||||| ||||| ||||| | || | || Sbjct 38865 CTGAACCTTAGGGATACGAGTGGAGCCCCCCACTAACACAATGTCATGGATCTTAGCCTT 38924 Query 281914 ATCCAGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCAAGACCAGCTCTAAACAAGTC 281973 ||||| || | |||| | | | || || || ||||| ||| ||||||||| ||| Sbjct 38925 ATCCATCTTGGCATCCCGAAGAGCCTTCTCCACAGGTTCCAGAGTGCCTCTAAACAGGTC 38984 Query 281974 TGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACAT-TATAA-TCAATTCCTTCG 282031 || ||| | ||||| || ||||| || || || | || || ||||| ||||| Sbjct 38985 TGCACACAACTCTTCAAACCGGGCTCTGGT--GATGGATGTGTAGAAGTCAATGCCTTCA 39042 Query 282032 AACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGATAGTGCACGTTTAGCACGT 282091 | | ||||||| ||| | | | || || || || || | | || || | Sbjct 39043 TAAAGTGAATCAATTTCCAAGTTGGCCTGGGTGCTGGACGACAGGGTCCTCTTGGCCCTC 39102 Query 282092 TCACATGCTGTCCTTAGTCTTCGTA-AG---GCTTTTGCTGATTGATTCAAATCTGTTTT 282147 || ||||| || | || | | | || |||| | ||| |||| || | || Sbjct 39103 TCGCATGCGGTGCGCAGCCGCCTCACAGCTCGCTTGTTCTGGCTGATG----TCCTTCTT 39158 Query 282148 ATATTTTCTCTTGAAATCTTCAACACACCATGTTACAAGACGATTATCAAAATCTTCACC 282207 | || |||||||| || || || | | || || | |||||||| ||||| || Sbjct 39159 GTGCTTCCTCTTGAACTCCTCCACGAAGTGGCTCACCAGCCTGTTATCAAAGTCTTCCCC 39218 Query 282208 TCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCATCTTCAAGAGACAA 282267 ||||| | || | || | || || |||| | |||| |||||| || | | || Sbjct 39219 TCCCAGGTGGGTGTCCCCGGCTGTGGCCTTTACCTCAAAAATTCCATCATCTATGGTCAG 39278 Query 282268 AAGAGTAACATCATGGGTTCCACCACCCATATCAAAAATAAGTACAT-TCATT-TCTTTG 282325 | | |||||| || || ||||| | |||||| || | || | || | || || Sbjct 39279 GATGGACACATCAAATGTGCCTCCACCTAGATCAAAGATCAAGACGTGTCGCTCTCCCTG 39338 Query 282326 TCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTC 282385 | || ||| | | ||| ||||| |||| |||||||| || |||||||| |||||||| Sbjct 39339 ACCTGCTTTATCT-AAG-CCATATGCAATGGCAGCAGCTGTGGGTTCATTGATAATTCTT 39396 Query 282386 AAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTA 282445 | ||||| ||||| ||||| |||||||| || ||||| || | ||| ||||| || Sbjct 39397 AGCACATTGAGACCCGCAATCACACCTGCATCCTTGGTGGCCTGGCGTTGAGAATCATTG 39456 Query 282446 AAATATGCAGGAACAGTAATAACGGCATCTGTTACTTCTTTTCCAATATAAGCGCTTGCT 282505 ||||| || || ||||| || || |||| || || | || | | |||| || Sbjct 39457 AAATAGGCTGGTACAGTGATCACTGCATTGGTAACAGGGTGGCCCAAAAAAGCCTCAGCA 39516 Query 282506 GTTTGTTTCATTTTACTTAAAATCATTGATGAAATTTGTTCTGGAGAATATTGCTTGGAT 282565 || | ||||| || | | | ||| || || |||| || ||| | | |||| | Sbjct 39517 GTCTCCTTCATCTTTGTCAGTACCATAGAAGAGATTTCCTCAGGATAGAAA-GCTTTTTT 39575 Query 282566 -TCATTTTGATATGATACTTCAAAATATGGTTTATTACCAACATTAATAACTTTAAATGG 282624 || || ||||| || | | ||||| || |||| ||||||| ||| || Sbjct 39576 CTCCCCTTTGTATGACACCATTACCTTGGGTTTGCCTCCTTCATTGATAACTTGAAAAGG 39635 Query 282625 CCAATATTTCATATCTGATTGAACACTTTGGTCATTAAAATCTCTACCAATTAATCGTTT 282684 |||| ||||||||||||||| || | |||||||| | || ||||| | ||||| Sbjct 39636 CCAAAGTTTCATATCTGATTGCACTACAGGATCATTAAACTTCCTGCCAATCAGACGTTT 39695 Query 282685 TGCATCAAAAATAGTATTGGTTGGATTAACTGCAGCTTGATATTTGGCTGCATCTCCAAT 282744 |||||||| | ||| || ||||| | || | || | ||||| ||||| || || Sbjct 39696 GGCATCAAAGACAGTGTTCTGGGGATTCATGGCCACCTGGTTCTTGGCGGCATCCCCGAT 39755 Query 282745 CAGATGTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTACCTTGATCATT 282804 || | || || || || || | ||||| || || ||||| || || || || || Sbjct 39756 GAGCCGCTCAGTGTCGGTGAAGGCCACATAGCTGGGGGTGGTGCGGTTGCCCTGGTCGTT 39815 Query 282805 CGCAATAATTTCAACTTTACC 282825 || || || || || || || Sbjct 39816 GGCGATGATCTCCACCTTGCC 39836 >seq41 Length=3861741 Score = 145 bits (160), Expect = 6e-29 Identities = 366/550 (67%), Gaps = 10/550 (2%) Strand=Plus/Plus Query 281777 GCACCATATGCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAA 281836 |||||||| |||||||| |||||||| || | | | ||| |||| ||| || |||||| Sbjct 3280910 GCACCATAAGCAACAGCCTCATCAGGGTTGATGCTCTTATTCAGTTCTTTTCCGTTGAAA 3280969 Query 281837 AAATTTGAAAGAAGTTGTCTTAC-CTTAGGAATACGAGATGATCCTCCAACTAATACAAT 281895 |||| | ||||||| ||| | ||| || ||||| | || || || || | ||||| Sbjct 3280970 AAATCTTGTAGAAGTT-TCTGAATCTTGGGGATACGGGTAGAACCACCCACCAGGACAAT 3281028 Query 281896 TTCATGCACCTGTGATTTATCCAGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCAAG 281955 || || | ||| || || || || || | |||| | |||| || || || || || Sbjct 3281029 ATCGTGGATCTGAGACTTGTCTAGCTTGGCATCCCGAAGGGCTTTCTCTACAGGGTCCAG 3281088 Query 281956 ACCAGCTCTAAACAAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACATT 282015 | | |||| ||| | | | |||||| || || | ||||| || | || Sbjct 3281089 GGTGCCACGGAACAGGTCAGCATTTAATTCTTCAAAGCGGGCACGAGTAATAGAGGTATA 3281148 Query 282016 ATAATCAATTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGATAG 282075 | || |||||||| ||| |||||||| ||||| | | || || ||||| || Sbjct 3281149 GAAGTCGATTCCTTCATACAGAGAATCAATCTCAATACTGGCCTGGGTGCTGGAAGAAAG 3281208 Query 282076 TGCACGTTTAGCACGTTCACATGCTGTCCTTAGTCTTCGTAAGGC--TTTTGCTGATTGA 282133 || ||| |||||||||||||| || || | || | || | || | ||| | || | Sbjct 3281209 TGTACGCTTAGCACGTTCACAAGCAGTACGGAGACGACGAACTGCCCTCTTGTT--TTCA 3281266 Query 282134 TTCAAATCTGTTTTATATTTTCTCTTGAAATCTTCAACACACCATGTT--ACAAGACGAT 282191 | | || | |||| ||| | ||||| ||| ||| | | ||| | || | || | Sbjct 3281267 CTGATGTCCTTCTTATGTTTGCGTTTGAACTCTGCAATAAA--ATGGTTGACCATTCGGT 3281324 Query 282192 TATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTC 282251 ||||||| ||||| || || || | ||| | ||| | || | | | || | ||| | || Sbjct 3281325 TATCAAAGTCTTCTCCACCTAAATGAGTGTCTCCAGCTGTGGATTTGACCTCGAAGATTC 3281384 Query 282252 CATCTTCAAGAGACAAAAGAGTAACATCATGGGTTCCACCACCCATATCAAAAATAAGTA 282311 ||||||||| || | | || |||||| || ||||| || | ||||| || || | Sbjct 3281385 CATCTTCAATAGTAAGGATAGACACATCAAAAGTGCCACCTCCTAAGTCAAAGATCAGCA 3281444 Query 282312 CATTCATTTC 282321 ||||| |||| Sbjct 3281445 CATTCCTTTC 3281454 Score = 107 bits (118), Expect = 1e-17 Identities = 109/142 (77%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 282332 TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACA 282391 ||||| || | ||||| |||| ||||||||||||||| ||||| || ||||| | ||| Sbjct 3281571 TTTTTGTCTAAGCCATAAGCAATAGCAGCAGCAGTTGGCTCATTGATGATTCTAAGTACA 3281630 Query 282392 TTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATAT 282451 || ||||||||||| |||| |||||||| || || || | || || || || || || Sbjct 3281631 TTGAGACCAGCAATAGTTCCAGCATCTTTGGTAGCCTGACGCTGAGAGTCATTGAAGTAG 3281690 Query 282452 GCAGGAACAGTAATAACGGCAT 282473 ||||| || || | ||| |||| Sbjct 3281691 GCAGGTACTGTGACAACTGCAT 3281712 >seq870 Length=870195 Score = 100 bits (110), Expect = 2e-15 Identities = 103/135 (76%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 400297 TGTACCCTAATTTTGACAGAGGGAGATTCAGCTAAAACATTCGCTATGTCTGGCCTTAAT 400356 ||||| || || |||| || ||||| ||||||||||| || ||| | || |||||| | Sbjct 254902 TGTACACTCATCCTGACTGAAGGAGACTCAGCTAAAACTTTGGCTGTTTCAGGCCTTGGT 254843 Query 400357 GTTATTGGAAGAGATTATTATGGAGTTTTCCCACTTAGAGGAAAACTTTTGAATGTTAGG 400416 || |||| ||||| | || || ||||||||||||||||||||| | | |||||| | Sbjct 254842 GTGGTTGGGAGAGACAAATACGGTGTTTTCCCACTTAGAGGAAAAATACTCAATGTTCGA 254783 Query 400417 GATGCTAGTCCTAAA 400431 || ||| || |||| Sbjct 254782 GAAGCTTCTCATAAA 254768 >seq138 Length=2487289 Score = 100 bits (110), Expect = 2e-15 Identities = 211/309 (68%), Gaps = 22/309 (7%) Strand=Plus/Plus Query 281265 TTTCTAATTCATTTTTAGAATCAACAGCAGCTTTTTT--CTTGTTATCTGCTTCTTCAAA 281322 |||| ||||||||| ||| ||||| || ||| || ||| || ||| | || |||| Sbjct 364483 TTTCCAATTCATTTCTAGTATCAAT-GC-GCTCCTTGAGCTTTTTGTCTTCCTCGGCAAA 364540 Query 281323 TTCTTTAGCTTCTCTAATCATTCTCTCAATTTGATCTTCAGAGAATCTTCCGCGATT--- 281379 | | ||| || ||| ||| || ||||||| |||||| | | |||||| Sbjct 364541 CTTCTCAGCATCATTAACCATCCTTTCAATTT---CTTCAGG---TGTCAGGCGATTTTG 364594 Query 281380 ---ATTAGTAATAGTAATATTCTTGGATTTGTT---TGTTGATTTATCAGCGGCAGTCAC 281433 ||| ||||| ||||| || || |||||| ||| ||| || | || ||||| Sbjct 364595 GTCATTCGTAATTGTAATCTTATT---TTTGTTGCCTGTACCTTTGTCTTCAGCTGTCAC 364651 Query 281434 ATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACCCCTCTCTG 281493 |||||| ||||| |||| | ||||| ||||||||||| || |||||||| | | Sbjct 364652 TCGAAGAATGCCATTCACATCTATCTCAAAGGTGACTTCAATCTGTGGGACCCCACGGGG 364711 Query 281494 AGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTAGTGAATTT 281553 |||||| || || || || || ||| ||||||||| | ||| ||||| || | Sbjct 364712 AGCAGGAGGAATTCCAGTCAGATCAAAAGTTCCCAGAAGGTGATTGTCTTTTGTCAGGGG 364771 Query 281554 TCGTTCACC 281562 ||||||||| Sbjct 364772 TCGTTCACC 364780 Score = 87.8 bits (96), Expect = 1e-11 Identities = 83/106 (78%), Gaps = 0/106 (0%) Strand=Plus/Plus Query 282368 GGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCT 282427 ||||||||||| || |||| ||| || | |||||||| ||||||||||||| || || Sbjct 366624 GGTTCATTAATGATCCTCATAACGTTCAATCCAGCAATAGTTCCTGCATCTTTGGTTGCC 366683 Query 282428 TGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCAT 282473 || | ||| | ||| || ||||| || || ||||||| ||| |||| Sbjct 366684 TGGCGTTGGGCATCATTGAAATAGGCTGGTACAGTAACAACTGCAT 366729 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3736630714579542