Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ailuropoda_20melanoleuca_20[refseq_20GCF_5F000004335.2_202009-12-15]
81,467 sequences; 2,299,509,015 total letters
Query= NC_023639.1
Length=1168989
Score E
Sequences producing significant alignments: (Bits) Value
seq3007 214 1e-49
seq41 145 6e-29
seq870 100 2e-15
seq138 100 2e-15
>seq3007
Length=51886
Score = 214 bits (236), Expect = 1e-49
Identities = 937/1461 (64%), Gaps = 24/1461 (2%)
Strand=Plus/Plus
Query 281377 ATTATTAGTAATAGTAATATTCTTGGATTTGTTTGTTGATTTATCAGCGGCAGTCACATT 281436
|| ||| || || || || || |||| ||| ||| || || ||| || |||||
Sbjct 38388 ATCATTGGTGATGGTGATCTTATTGGCCTTGCCTGTGCTCTTGTCCATGGCTGTTACATT 38447
Query 281437 AAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACCCCTCTCTGAGC 281496
||||||||||||||||| | ||||| || || ||||| ||||| || || || | ||
Sbjct 38448 GAGAATACCATTGGCATCAATGTCAAAGGTCACCTCAATCTGAGGCACTCCCCTGGGTGC 38507
Query 281497 AGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTAGTGAATTTTCG 281556
||| ||||| || || | ||| ||||| || |||||| || | ||
Sbjct 38508 AGGAGGGATTCCAGTCAGGTCAAACCGCCCCAGGAGGTTGTTATCTCGGGTCATGGCTCT 38567
Query 281557 TTCACCCTCGAAAATTTGGATAGTAACTACAGTTTGATTATCTGAATAAGTTGTAAATAC 281616
|| ||||| | | ||||| || ||| || ||||||||||| || || || |
Sbjct 38568 CTCGCCCTCATACACCTGGATCAATACCCCAGGCTGGTTATCTGAATAGGTGGTGAAGA- 38626
Query 281617 TCTGGATTTT-TTACAAGGAATTGTTGTGTTTCTATCAATAATATTGGTCATAATACCAC 281675
|||| | | || || || || | ||| | | || | ||||| | ||| |
Sbjct 38627 TCTGCGTCTGCTTGGTGGGGATGGTGGAGTTGCGCTTGATCAGGACTGTCATGACACCTC 38686
Query 281676 CAGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACAATATTTTGAAGTT 281735
|||| ||||| || || || || | |||| ||||| | | | | || || | |
Sbjct 38687 CAGCCGTTTCCAACCCTAGGGACAAGGGAGCCACATCCAACAAAAGCAGATCCTGTACCT 38746
Query 281736 TTTCATCAGTTTGACCAA-CAAGAATAGCTGCTTGAATAGCAGCACCATATGCAACAGCT 281794
||||| | | || | ||||| | ||||| || | || || || || || || ||
Sbjct 38747 TTTCAGACTTGTCCCCCATCAAGA-TGGCTGCCTGCACTGCCGCCCCGTAGGCTACCGCC 38805
Query 281795 TCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAAAAATTTGAAAGAAGTTGT 281854
|||||||| || | | | || || | |||||| || | | || || |
Sbjct 38806 TCATCAGGGTTGATGCTCTTGTTGAGATCACGACCATTAAAGTAGTCCTGCAGCAGCC-T 38864
Query 281855 CTTA-CCTTAGGAATACGAGATGATCCTCCAACTAATACAATTTCATGCACCTGTGATTT 281913
|| | ||||||| ||||||| || || || ||||| ||||| ||||| | || | ||
Sbjct 38865 CTGAACCTTAGGGATACGAGTGGAGCCCCCCACTAACACAATGTCATGGATCTTAGCCTT 38924
Query 281914 ATCCAGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCAAGACCAGCTCTAAACAAGTC 281973
||||| || | |||| | | | || || || ||||| ||| ||||||||| |||
Sbjct 38925 ATCCATCTTGGCATCCCGAAGAGCCTTCTCCACAGGTTCCAGAGTGCCTCTAAACAGGTC 38984
Query 281974 TGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACAT-TATAA-TCAATTCCTTCG 282031
|| ||| | ||||| || ||||| || || || | || || ||||| |||||
Sbjct 38985 TGCACACAACTCTTCAAACCGGGCTCTGGT--GATGGATGTGTAGAAGTCAATGCCTTCA 39042
Query 282032 AACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGATAGTGCACGTTTAGCACGT 282091
| | ||||||| ||| | | | || || || || || | | || || |
Sbjct 39043 TAAAGTGAATCAATTTCCAAGTTGGCCTGGGTGCTGGACGACAGGGTCCTCTTGGCCCTC 39102
Query 282092 TCACATGCTGTCCTTAGTCTTCGTA-AG---GCTTTTGCTGATTGATTCAAATCTGTTTT 282147
|| ||||| || | || | | | || |||| | ||| |||| || | ||
Sbjct 39103 TCGCATGCGGTGCGCAGCCGCCTCACAGCTCGCTTGTTCTGGCTGATG----TCCTTCTT 39158
Query 282148 ATATTTTCTCTTGAAATCTTCAACACACCATGTTACAAGACGATTATCAAAATCTTCACC 282207
| || |||||||| || || || | | || || | |||||||| ||||| ||
Sbjct 39159 GTGCTTCCTCTTGAACTCCTCCACGAAGTGGCTCACCAGCCTGTTATCAAAGTCTTCCCC 39218
Query 282208 TCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCATCTTCAAGAGACAA 282267
||||| | || | || | || || |||| | |||| |||||| || | | ||
Sbjct 39219 TCCCAGGTGGGTGTCCCCGGCTGTGGCCTTTACCTCAAAAATTCCATCATCTATGGTCAG 39278
Query 282268 AAGAGTAACATCATGGGTTCCACCACCCATATCAAAAATAAGTACAT-TCATT-TCTTTG 282325
| | |||||| || || ||||| | |||||| || | || | || | || ||
Sbjct 39279 GATGGACACATCAAATGTGCCTCCACCTAGATCAAAGATCAAGACGTGTCGCTCTCCCTG 39338
Query 282326 TCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTC 282385
| || ||| | | ||| ||||| |||| |||||||| || |||||||| ||||||||
Sbjct 39339 ACCTGCTTTATCT-AAG-CCATATGCAATGGCAGCAGCTGTGGGTTCATTGATAATTCTT 39396
Query 282386 AAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTA 282445
| ||||| ||||| ||||| |||||||| || ||||| || | ||| ||||| ||
Sbjct 39397 AGCACATTGAGACCCGCAATCACACCTGCATCCTTGGTGGCCTGGCGTTGAGAATCATTG 39456
Query 282446 AAATATGCAGGAACAGTAATAACGGCATCTGTTACTTCTTTTCCAATATAAGCGCTTGCT 282505
||||| || || ||||| || || |||| || || | || | | |||| ||
Sbjct 39457 AAATAGGCTGGTACAGTGATCACTGCATTGGTAACAGGGTGGCCCAAAAAAGCCTCAGCA 39516
Query 282506 GTTTGTTTCATTTTACTTAAAATCATTGATGAAATTTGTTCTGGAGAATATTGCTTGGAT 282565
|| | ||||| || | | | ||| || || |||| || ||| | | |||| |
Sbjct 39517 GTCTCCTTCATCTTTGTCAGTACCATAGAAGAGATTTCCTCAGGATAGAAA-GCTTTTTT 39575
Query 282566 -TCATTTTGATATGATACTTCAAAATATGGTTTATTACCAACATTAATAACTTTAAATGG 282624
|| || ||||| || | | ||||| || |||| ||||||| ||| ||
Sbjct 39576 CTCCCCTTTGTATGACACCATTACCTTGGGTTTGCCTCCTTCATTGATAACTTGAAAAGG 39635
Query 282625 CCAATATTTCATATCTGATTGAACACTTTGGTCATTAAAATCTCTACCAATTAATCGTTT 282684
|||| ||||||||||||||| || | |||||||| | || ||||| | |||||
Sbjct 39636 CCAAAGTTTCATATCTGATTGCACTACAGGATCATTAAACTTCCTGCCAATCAGACGTTT 39695
Query 282685 TGCATCAAAAATAGTATTGGTTGGATTAACTGCAGCTTGATATTTGGCTGCATCTCCAAT 282744
|||||||| | ||| || ||||| | || | || | ||||| ||||| || ||
Sbjct 39696 GGCATCAAAGACAGTGTTCTGGGGATTCATGGCCACCTGGTTCTTGGCGGCATCCCCGAT 39755
Query 282745 CAGATGTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTACCTTGATCATT 282804
|| | || || || || || | ||||| || || ||||| || || || || ||
Sbjct 39756 GAGCCGCTCAGTGTCGGTGAAGGCCACATAGCTGGGGGTGGTGCGGTTGCCCTGGTCGTT 39815
Query 282805 CGCAATAATTTCAACTTTACC 282825
|| || || || || || ||
Sbjct 39816 GGCGATGATCTCCACCTTGCC 39836
>seq41
Length=3861741
Score = 145 bits (160), Expect = 6e-29
Identities = 366/550 (67%), Gaps = 10/550 (2%)
Strand=Plus/Plus
Query 281777 GCACCATATGCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAA 281836
|||||||| |||||||| |||||||| || | | | ||| |||| ||| || ||||||
Sbjct 3280910 GCACCATAAGCAACAGCCTCATCAGGGTTGATGCTCTTATTCAGTTCTTTTCCGTTGAAA 3280969
Query 281837 AAATTTGAAAGAAGTTGTCTTAC-CTTAGGAATACGAGATGATCCTCCAACTAATACAAT 281895
|||| | ||||||| ||| | ||| || ||||| | || || || || | |||||
Sbjct 3280970 AAATCTTGTAGAAGTT-TCTGAATCTTGGGGATACGGGTAGAACCACCCACCAGGACAAT 3281028
Query 281896 TTCATGCACCTGTGATTTATCCAGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCAAG 281955
|| || | ||| || || || || || | |||| | |||| || || || || ||
Sbjct 3281029 ATCGTGGATCTGAGACTTGTCTAGCTTGGCATCCCGAAGGGCTTTCTCTACAGGGTCCAG 3281088
Query 281956 ACCAGCTCTAAACAAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACATT 282015
| | |||| ||| | | | |||||| || || | ||||| || | ||
Sbjct 3281089 GGTGCCACGGAACAGGTCAGCATTTAATTCTTCAAAGCGGGCACGAGTAATAGAGGTATA 3281148
Query 282016 ATAATCAATTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGATAG 282075
| || |||||||| ||| |||||||| ||||| | | || || ||||| ||
Sbjct 3281149 GAAGTCGATTCCTTCATACAGAGAATCAATCTCAATACTGGCCTGGGTGCTGGAAGAAAG 3281208
Query 282076 TGCACGTTTAGCACGTTCACATGCTGTCCTTAGTCTTCGTAAGGC--TTTTGCTGATTGA 282133
|| ||| |||||||||||||| || || | || | || | || | ||| | || |
Sbjct 3281209 TGTACGCTTAGCACGTTCACAAGCAGTACGGAGACGACGAACTGCCCTCTTGTT--TTCA 3281266
Query 282134 TTCAAATCTGTTTTATATTTTCTCTTGAAATCTTCAACACACCATGTT--ACAAGACGAT 282191
| | || | |||| ||| | ||||| ||| ||| | | ||| | || | || |
Sbjct 3281267 CTGATGTCCTTCTTATGTTTGCGTTTGAACTCTGCAATAAA--ATGGTTGACCATTCGGT 3281324
Query 282192 TATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTC 282251
||||||| ||||| || || || | ||| | ||| | || | | | || | ||| | ||
Sbjct 3281325 TATCAAAGTCTTCTCCACCTAAATGAGTGTCTCCAGCTGTGGATTTGACCTCGAAGATTC 3281384
Query 282252 CATCTTCAAGAGACAAAAGAGTAACATCATGGGTTCCACCACCCATATCAAAAATAAGTA 282311
||||||||| || | | || |||||| || ||||| || | ||||| || || |
Sbjct 3281385 CATCTTCAATAGTAAGGATAGACACATCAAAAGTGCCACCTCCTAAGTCAAAGATCAGCA 3281444
Query 282312 CATTCATTTC 282321
||||| ||||
Sbjct 3281445 CATTCCTTTC 3281454
Score = 107 bits (118), Expect = 1e-17
Identities = 109/142 (77%), Gaps = 0/142 (0%)
Strand=Plus/Plus
Query 282332 TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACA 282391
||||| || | ||||| |||| ||||||||||||||| ||||| || ||||| | |||
Sbjct 3281571 TTTTTGTCTAAGCCATAAGCAATAGCAGCAGCAGTTGGCTCATTGATGATTCTAAGTACA 3281630
Query 282392 TTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATAT 282451
|| ||||||||||| |||| |||||||| || || || | || || || || || ||
Sbjct 3281631 TTGAGACCAGCAATAGTTCCAGCATCTTTGGTAGCCTGACGCTGAGAGTCATTGAAGTAG 3281690
Query 282452 GCAGGAACAGTAATAACGGCAT 282473
||||| || || | ||| ||||
Sbjct 3281691 GCAGGTACTGTGACAACTGCAT 3281712
>seq870
Length=870195
Score = 100 bits (110), Expect = 2e-15
Identities = 103/135 (76%), Gaps = 0/135 (0%)
Strand=Plus/Minus
Query 400297 TGTACCCTAATTTTGACAGAGGGAGATTCAGCTAAAACATTCGCTATGTCTGGCCTTAAT 400356
||||| || || |||| || ||||| ||||||||||| || ||| | || |||||| |
Sbjct 254902 TGTACACTCATCCTGACTGAAGGAGACTCAGCTAAAACTTTGGCTGTTTCAGGCCTTGGT 254843
Query 400357 GTTATTGGAAGAGATTATTATGGAGTTTTCCCACTTAGAGGAAAACTTTTGAATGTTAGG 400416
|| |||| ||||| | || || ||||||||||||||||||||| | | |||||| |
Sbjct 254842 GTGGTTGGGAGAGACAAATACGGTGTTTTCCCACTTAGAGGAAAAATACTCAATGTTCGA 254783
Query 400417 GATGCTAGTCCTAAA 400431
|| ||| || ||||
Sbjct 254782 GAAGCTTCTCATAAA 254768
>seq138
Length=2487289
Score = 100 bits (110), Expect = 2e-15
Identities = 211/309 (68%), Gaps = 22/309 (7%)
Strand=Plus/Plus
Query 281265 TTTCTAATTCATTTTTAGAATCAACAGCAGCTTTTTT--CTTGTTATCTGCTTCTTCAAA 281322
|||| ||||||||| ||| ||||| || ||| || ||| || ||| | || ||||
Sbjct 364483 TTTCCAATTCATTTCTAGTATCAAT-GC-GCTCCTTGAGCTTTTTGTCTTCCTCGGCAAA 364540
Query 281323 TTCTTTAGCTTCTCTAATCATTCTCTCAATTTGATCTTCAGAGAATCTTCCGCGATT--- 281379
| | ||| || ||| ||| || ||||||| |||||| | | ||||||
Sbjct 364541 CTTCTCAGCATCATTAACCATCCTTTCAATTT---CTTCAGG---TGTCAGGCGATTTTG 364594
Query 281380 ---ATTAGTAATAGTAATATTCTTGGATTTGTT---TGTTGATTTATCAGCGGCAGTCAC 281433
||| ||||| ||||| || || |||||| ||| ||| || | || |||||
Sbjct 364595 GTCATTCGTAATTGTAATCTTATT---TTTGTTGCCTGTACCTTTGTCTTCAGCTGTCAC 364651
Query 281434 ATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACCCCTCTCTG 281493
|||||| ||||| |||| | ||||| ||||||||||| || |||||||| | |
Sbjct 364652 TCGAAGAATGCCATTCACATCTATCTCAAAGGTGACTTCAATCTGTGGGACCCCACGGGG 364711
Query 281494 AGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTAGTGAATTT 281553
|||||| || || || || || ||| ||||||||| | ||| ||||| || |
Sbjct 364712 AGCAGGAGGAATTCCAGTCAGATCAAAAGTTCCCAGAAGGTGATTGTCTTTTGTCAGGGG 364771
Query 281554 TCGTTCACC 281562
|||||||||
Sbjct 364772 TCGTTCACC 364780
Score = 87.8 bits (96), Expect = 1e-11
Identities = 83/106 (78%), Gaps = 0/106 (0%)
Strand=Plus/Plus
Query 282368 GGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCT 282427
||||||||||| || |||| ||| || | |||||||| ||||||||||||| || ||
Sbjct 366624 GGTTCATTAATGATCCTCATAACGTTCAATCCAGCAATAGTTCCTGCATCTTTGGTTGCC 366683
Query 282428 TGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCAT 282473
|| | ||| | ||| || ||||| || || ||||||| ||| ||||
Sbjct 366684 TGGCGTTGGGCATCATTGAAATAGGCTGGTACAGTAACAACTGCAT 366729
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 3736630714579542
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |