Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ailuropoda_20melanoleuca_20[refseq_20GCF_5F000004335.2_202009-12-15] 81,467 sequences; 2,299,509,015 total letters Query= NC_024303.1 Length=144898 Score E Sequences producing significant alignments: (Bits) Value seq497 93.3 4e-14 seq847 82.4 7e-11 >seq497 Length=1337528 Score = 93.3 bits (102), Expect = 4e-14 Identities = 114/153 (75%), Gaps = 2/153 (1%) Strand=Plus/Minus Query 21123 CTAGCATTTGGGGGCCTAGCTGCGATGGCTTAGATTGCATTGTTAAGCGGTGTGAACTGC 21182 ||||||| ||||| || | || || ||| | ||| ||||||| |||| || || ||| Sbjct 575592 CTAGCATATGGGGACCAACATGTGACGGCCTGGATCGCATTGTCGAGCGCTGCGACTTGC 575533 Query 21183 CAGAGCTTCAAGTGGGCGACTGGCTCATATTTGAAAACATGGGCGCTTACAGCTTGGTCA 21242 | ||| | || |||||||| ||| | | |||||||||||||| ||||||| || | | Sbjct 575532 CCGAGATGCACGTGGGCGATTGGATGGTCTTTGAAAACATGGGTGCTTACA-CTGTGGCT 575474 Query 21243 GCT-CTTCAACCTTTAACGGCTTCCCAAAGCCA 21274 ||| |||| ||||| || || |||| | |||| Sbjct 575473 GCTGCTTCGACCTTCAATGGATTCCAGAGGCCA 575441 >seq847 Length=894766 Score = 82.4 bits (90), Expect = 7e-11 Identities = 127/178 (71%), Gaps = 4/178 (2%) Strand=Plus/Plus Query 20324 AAGACCCTAGCTGCCCTTAAAACTGGCTTTGACTGTGCCAGTAAGCAGGAGATTCAGTTA 20383 ||| ||||||||||||| | | | |||||||||||||| ||| || || || || Sbjct 49370 AAGCCCCTAGCTGCCCTGAGACA--GATTTGACTGTGCCAGCAAGACTGAAATACAATTG 49427 Query 20384 CTGCAAAATCTGGGAGTTCACGCAGACAGGATACTTTTTGCGAATCCTTGTAAGCAGCCT 20443 | || | ||| | || | |||| ||||| | | ||| ||||||||||||| Sbjct 49428 -TACAGAGTCTCAGGGTGCCTCCAGAGAGGATTATCTATGCAAATCCTTGTAAGCGAGTG 49486 Query 20444 TCGCATATAACGTATGCCGCTCAAACTGGAGTAAGGCTGATGACTTTTGATAGTGAAG 20501 || || || | ||||| || ||| |||||| | ||||||||||||||||||||| Sbjct 49487 TCTCAGATTAA-TATGCTGCCAAAAATGGAGTCCAGATGATGACTTTTGATAGTGAAG 49543 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 463073554132560