Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ailuropoda_20melanoleuca_20[refseq_20GCF_5F000004335.2_202009-12-15]
81,467 sequences; 2,299,509,015 total letters
Query= NC_024382.1
Length=137090
Score E
Sequences producing significant alignments: (Bits) Value
seq17 122 8e-23
>seq17
Length=4663558
Score = 122 bits (134), Expect = 8e-23
Identities = 99/119 (83%), Gaps = 1/119 (1%)
Strand=Plus/Plus
Query 1071 CCACAGCTCTAGCTTCTGGTCTGAAAAAGAGTAGGTTTCTCTTGAGAGTTAAGGAAGGCA 1130
|||||||||||||||| |||||||||| ||| ||| |||| || | | | ||||||||
Sbjct 2149456 CCACAGCTCTAGCTTCAGGTCTGAAAA-GAGGAGGCTTCTTCTGGGGGCCACGGAAGGCA 2149514
Query 1131 TTTTAAAGAAAAGGCTTAGaaaaaaaaTCTGGTGGGCACTTACATATTCTTCCATAAGT 1189
||||||||||| ||| |||||| ||||||| |||||||||| || ||||||| ||||
Sbjct 2149515 TTTTAAAGAAATGGCCCAGAAAAGAAATCTGTAGGGCACTTACGTAGTCTTCCAAAAGT 2149573
Score = 91.5 bits (100), Expect = 1e-13
Identities = 70/83 (84%), Gaps = 0/83 (0%)
Strand=Plus/Plus
Query 172 ACAAGATACAAAACAGGTTATCAGAAAAATTCAGTATAATTTATTAAATAATTTTCAAGG 231
|||| || |||||||| |||| |||||||| || ||||||||||||||||||| | |||
Sbjct 2147450 ACAAAATCCAAAACAGATTATGAGAAAAATCCAATATAATTTATTAAATAATTCCCGAGG 2147509
Query 232 GCTTCTTTAAGAAGCATTAACAA 254
||| ||| ||| ||| |||||||
Sbjct 2147510 GCTCCTTCAAGGAGCGTTAACAA 2147532
Score = 84.2 bits (92), Expect = 2e-11
Identities = 184/270 (68%), Gaps = 23/270 (9%)
Strand=Plus/Plus
Query 1498 AGCA-GGAGAGAGCG-AGGCCGCC-GCTTTGGCAACAGCTGCTAGAGTGAGATGTGCTCG 1554
|||| || ||||| | | || ||| |||| |||| |||| || | || ||||||||||
Sbjct 2149847 AGCATGGTGAGAGTGTATGCGGCCTGCTTCGGCAGTAGCTTCTGGGGTCAGATGTGCTCA 2149906
Query 1555 CTATACTTTTAGGGAACTGTATATAAAGGGCTAGTTGTAAGGAGGAGCACTAA---AAGT 1611
| || | | ||| | |||||||| || |||||| ||| | | | | | ||
Sbjct 2149907 CCATGGTCCTCCGGAGAT--ATATAAAGAGCCAGTTGTGGGGAAAAAGAATGATCAACGT 2149964
Query 1612 ACCGCCCACGGTAAAGTCATTACTCAG-----------AAAACATTTCAAATTTATGCCA 1660
||||||| || ||| ||||| ||||| |||||| | |||| || |||
Sbjct 2149965 CCCGCCCATGGCAAAATCATTGCTCAGCTTTTCTCCAGAAAACACT-CAAAATTCTGCGG 2150023
Query 1661 TCTGATCTTGGATAAAAGCAAGGCTCGAAGGAAATG---AAGTTACCCTTAAGATGGGCA 1717
| | |||| |||||| |||| ||||||| || | |||||||| ||| ||||||
Sbjct 2150024 CCCAAGGTTGGGCGAAAGCAGGGCTGGAAGGAAGTGCTGAGGTTACCCTCAAGGTGGGCA 2150083
Query 1718 GATGCTTGACGCACTGCATATACACACCGG 1747
||||| |||| || | || | |||||| ||
Sbjct 2150084 GATGCCTGACTCAGTACAGACACACACAGG 2150113
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 438113397906000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |