Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ailuropoda_20melanoleuca_20[refseq_20GCF_5F000004335.2_202009-12-15] 81,467 sequences; 2,299,509,015 total letters Query= NC_024382.1 Length=137090 Score E Sequences producing significant alignments: (Bits) Value seq17 122 8e-23 >seq17 Length=4663558 Score = 122 bits (134), Expect = 8e-23 Identities = 99/119 (83%), Gaps = 1/119 (1%) Strand=Plus/Plus Query 1071 CCACAGCTCTAGCTTCTGGTCTGAAAAAGAGTAGGTTTCTCTTGAGAGTTAAGGAAGGCA 1130 |||||||||||||||| |||||||||| ||| ||| |||| || | | | |||||||| Sbjct 2149456 CCACAGCTCTAGCTTCAGGTCTGAAAA-GAGGAGGCTTCTTCTGGGGGCCACGGAAGGCA 2149514 Query 1131 TTTTAAAGAAAAGGCTTAGaaaaaaaaTCTGGTGGGCACTTACATATTCTTCCATAAGT 1189 ||||||||||| ||| |||||| ||||||| |||||||||| || ||||||| |||| Sbjct 2149515 TTTTAAAGAAATGGCCCAGAAAAGAAATCTGTAGGGCACTTACGTAGTCTTCCAAAAGT 2149573 Score = 91.5 bits (100), Expect = 1e-13 Identities = 70/83 (84%), Gaps = 0/83 (0%) Strand=Plus/Plus Query 172 ACAAGATACAAAACAGGTTATCAGAAAAATTCAGTATAATTTATTAAATAATTTTCAAGG 231 |||| || |||||||| |||| |||||||| || ||||||||||||||||||| | ||| Sbjct 2147450 ACAAAATCCAAAACAGATTATGAGAAAAATCCAATATAATTTATTAAATAATTCCCGAGG 2147509 Query 232 GCTTCTTTAAGAAGCATTAACAA 254 ||| ||| ||| ||| ||||||| Sbjct 2147510 GCTCCTTCAAGGAGCGTTAACAA 2147532 Score = 84.2 bits (92), Expect = 2e-11 Identities = 184/270 (68%), Gaps = 23/270 (9%) Strand=Plus/Plus Query 1498 AGCA-GGAGAGAGCG-AGGCCGCC-GCTTTGGCAACAGCTGCTAGAGTGAGATGTGCTCG 1554 |||| || ||||| | | || ||| |||| |||| |||| || | || |||||||||| Sbjct 2149847 AGCATGGTGAGAGTGTATGCGGCCTGCTTCGGCAGTAGCTTCTGGGGTCAGATGTGCTCA 2149906 Query 1555 CTATACTTTTAGGGAACTGTATATAAAGGGCTAGTTGTAAGGAGGAGCACTAA---AAGT 1611 | || | | ||| | |||||||| || |||||| ||| | | | | | || Sbjct 2149907 CCATGGTCCTCCGGAGAT--ATATAAAGAGCCAGTTGTGGGGAAAAAGAATGATCAACGT 2149964 Query 1612 ACCGCCCACGGTAAAGTCATTACTCAG-----------AAAACATTTCAAATTTATGCCA 1660 ||||||| || ||| ||||| ||||| |||||| | |||| || ||| Sbjct 2149965 CCCGCCCATGGCAAAATCATTGCTCAGCTTTTCTCCAGAAAACACT-CAAAATTCTGCGG 2150023 Query 1661 TCTGATCTTGGATAAAAGCAAGGCTCGAAGGAAATG---AAGTTACCCTTAAGATGGGCA 1717 | | |||| |||||| |||| ||||||| || | |||||||| ||| |||||| Sbjct 2150024 CCCAAGGTTGGGCGAAAGCAGGGCTGGAAGGAAGTGCTGAGGTTACCCTCAAGGTGGGCA 2150083 Query 1718 GATGCTTGACGCACTGCATATACACACCGG 1747 ||||| |||| || | || | |||||| || Sbjct 2150084 GATGCCTGACTCAGTACAGACACACACAGG 2150113 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 438113397906000