Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ailuropoda_20melanoleuca_20[refseq_20GCF_5F000004335.2_202009-12-15] 81,467 sequences; 2,299,509,015 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq17 129 1e-24 seq1006 93.3 8e-14 seq182 91.5 3e-13 seq1347 89.7 1e-12 seq8 84.2 4e-11 >seq17 Length=4663558 Score = 129 bits (142), Expect = 1e-24 Identities = 170/237 (72%), Gaps = 9/237 (4%) Strand=Plus/Plus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 ||||| ||||| ||||| || ||||||||||| ||||| ||||| || || || ||||| Sbjct 4172513 CCTCCCCTCAAGCGCAGGACCAAGTGCAGAGTGGATTCCTTCTGGATGTTGTAGTCAGAC 4172572 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 || | | || ||||| || ||||| || |||||||| | || || || || || || Sbjct 4172573 AGGGTGCGCCCATCTTCCAGCTGTTTCCCCGCAAAGATCAACCTCTGCTGGTCGGGGGGG 4172632 Query 82704 ATTCCTTCC---------TTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTA 82754 || || ||| || || || ||||| || || || || || || || || | Sbjct 4172633 ATGCCCTCCTTGTCCTGTTTGTCCTGGATCTTCGCCTTGACGTTCTCGATGGTGTCGCTT 4172692 Query 82755 GGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATT 82811 || || || |||| || || ||||| |||||||| ||||| || || ||||||||| Sbjct 4172693 GGCTCCACCTCCAGGGTGATGGTCTTACCTGTCAAGGTCTTCACGAAGATCTGCATT 4172749 >seq1006 Length=751320 Score = 93.3 bits (102), Expect = 8e-14 Identities = 155/224 (69%), Gaps = 0/224 (0%) Strand=Plus/Plus Query 82587 CCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGA 82646 |||| ||| | || || ||||||| || || | |||||| |||||| | || ||||| Sbjct 731804 CCTCCCAAGCAAAGCACCCAGTGCAGGGTGGACTATTTCTGGATATTACAGTCTGATAGG 731863 Query 82647 ATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATT 82706 | || || || || ||||| || ||| | || | || || || || || Sbjct 731864 GCACAGCCATCCTCCAGCTGTTTGCCTACAATAGTCAGACACTGCTGGTCAGGCAAAATA 731923 Query 82707 CCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCC 82766 || | ||| ||||| || || ||||| ||||| ||||| || ||| | | ||||| Sbjct 731924 CCCTGCTTGTCTTGGATTTTGGCTTTGACATTCTCAATGGTGTCACTGCACTGGACTTCA 731983 Query 82767 AAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 | ||||| ||||||||||||| ||||| | ||| |||||||| Sbjct 731984 AGGGTTATGGTCTTGCCTGTCACTGTCTTCATAAAGATCTGCAT 732027 >seq182 Length=2248111 Score = 91.5 bits (100), Expect = 3e-13 Identities = 117/159 (74%), Gaps = 2/159 (1%) Strand=Plus/Minus Query 82653 CCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCC 82712 || || || ||||| | ||||| ||||| ||| | || ||||| ||||| ||||||||| Sbjct 678719 CCATCGTCCAGTTGCTCGCCAGCGAAGATCAGTGTCTGCTGATCAGGAGGAATTCCTTCC 678660 Query 82713 TTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGG-TTCTACTTCCAAAGT 82771 ||||| || |||| || ||||| |||| | ||||| | ||| ||| ||||| | ||| Sbjct 678659 TTATCCTGGATCTCGGCCTTTACGCTTTCTACAGTATC-TGAGGATTCAACTTCGACAGT 678601 Query 82772 TATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || ||||| || ||| | | |||| |||||||| Sbjct 678600 GATGGTCTTCCCCATCAGCACTGTCACAAGAATCTGCAT 678562 >seq1347 Length=544027 Score = 89.7 bits (98), Expect = 1e-12 Identities = 144/205 (70%), Gaps = 3/205 (1%) Strand=Plus/Plus Query 82609 GCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGTT 82668 |||| | || ||||||| || | || ||||| ||| | || |||||||| | Sbjct 219214 GCAGGATTGACTCTTTCTAGATGCTGTAGTCAGAAAGAGTGGGGCCATCTTCTAGCTCGC 219273 Query 82669 TTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTT- 82727 | || |||||||| || || || || || || | || |||| ||||| || ||||| Sbjct 219274 TGCCTGCAAAGATGAGCCTCTGCTGGTCAGGGGAGATGACTTCTTTATCCTGGATCTTAT 219333 Query 82728 -GCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGT 82786 ||||| ||||||||||| || ||| | | | || |||| ||| || ||||||| || Sbjct 219334 AGCTTTCACATTTTCAATAGTGTCACTGTGCCCCACCTCCAGAGTAATGATCTTGCCAGT 219393 Query 82787 CAACGTCTTTACAAATATCTGCATT 82811 ||| ||||| | || || |||||| Sbjct 219394 CAAGGTCTTCA-GAAGATTTGCATT 219417 >seq8 Length=5331620 Score = 84.2 bits (92), Expect = 4e-11 Identities = 124/176 (70%), Gaps = 0/176 (0%) Strand=Plus/Minus Query 82635 TAATCAGATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGA 82694 || ||||| | | | | || |||| ||||| || | || ||||| ||||| || ||| Sbjct 5215754 TAGTCAGACAAAGTACATCCATCTTGCAGTTGCTTGCTGGCCAAGATCAGTCTCTGCTGA 5215695 Query 82695 TCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTA 82754 || ||| | |||||||||||||| | |||||| || ||||||||| || ||||| Sbjct 5215694 TCGGGAAGAATTCCTTCCTTATCCTAAATCTTGGCCTTTACATTTCTTATTGTATCCAAG 5215635 Query 82755 GGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 | ||| || | | || || |||| ||| | | || || || || |||||||| Sbjct 5215634 GTTTCAACCACGAGAGGGATAATCTTCCCTATAAGGGTTTTCACGAAAATCTGCAT 5215579 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 980802372757313