Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ailuropoda_20melanoleuca_20[refseq_20GCF_5F000004335.2_202009-12-15]
81,467 sequences; 2,299,509,015 total letters
Query= NC_024446.1
Length=306862
Score E
Sequences producing significant alignments: (Bits) Value
seq17 129 1e-24
seq1006 93.3 8e-14
seq182 91.5 3e-13
seq1347 89.7 1e-12
seq8 84.2 4e-11
>seq17
Length=4663558
Score = 129 bits (142), Expect = 1e-24
Identities = 170/237 (72%), Gaps = 9/237 (4%)
Strand=Plus/Plus
Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643
||||| ||||| ||||| || ||||||||||| ||||| ||||| || || || |||||
Sbjct 4172513 CCTCCCCTCAAGCGCAGGACCAAGTGCAGAGTGGATTCCTTCTGGATGTTGTAGTCAGAC 4172572
Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703
|| | | || ||||| || ||||| || |||||||| | || || || || || ||
Sbjct 4172573 AGGGTGCGCCCATCTTCCAGCTGTTTCCCCGCAAAGATCAACCTCTGCTGGTCGGGGGGG 4172632
Query 82704 ATTCCTTCC---------TTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTA 82754
|| || ||| || || || ||||| || || || || || || || || |
Sbjct 4172633 ATGCCCTCCTTGTCCTGTTTGTCCTGGATCTTCGCCTTGACGTTCTCGATGGTGTCGCTT 4172692
Query 82755 GGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATT 82811
|| || || |||| || || ||||| |||||||| ||||| || || |||||||||
Sbjct 4172693 GGCTCCACCTCCAGGGTGATGGTCTTACCTGTCAAGGTCTTCACGAAGATCTGCATT 4172749
>seq1006
Length=751320
Score = 93.3 bits (102), Expect = 8e-14
Identities = 155/224 (69%), Gaps = 0/224 (0%)
Strand=Plus/Plus
Query 82587 CCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGA 82646
|||| ||| | || || ||||||| || || | |||||| |||||| | || |||||
Sbjct 731804 CCTCCCAAGCAAAGCACCCAGTGCAGGGTGGACTATTTCTGGATATTACAGTCTGATAGG 731863
Query 82647 ATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATT 82706
| || || || || ||||| || ||| | || | || || || || ||
Sbjct 731864 GCACAGCCATCCTCCAGCTGTTTGCCTACAATAGTCAGACACTGCTGGTCAGGCAAAATA 731923
Query 82707 CCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCC 82766
|| | ||| ||||| || || ||||| ||||| ||||| || ||| | | |||||
Sbjct 731924 CCCTGCTTGTCTTGGATTTTGGCTTTGACATTCTCAATGGTGTCACTGCACTGGACTTCA 731983
Query 82767 AAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810
| ||||| ||||||||||||| ||||| | ||| ||||||||
Sbjct 731984 AGGGTTATGGTCTTGCCTGTCACTGTCTTCATAAAGATCTGCAT 732027
>seq182
Length=2248111
Score = 91.5 bits (100), Expect = 3e-13
Identities = 117/159 (74%), Gaps = 2/159 (1%)
Strand=Plus/Minus
Query 82653 CCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCC 82712
|| || || ||||| | ||||| ||||| ||| | || ||||| ||||| |||||||||
Sbjct 678719 CCATCGTCCAGTTGCTCGCCAGCGAAGATCAGTGTCTGCTGATCAGGAGGAATTCCTTCC 678660
Query 82713 TTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGG-TTCTACTTCCAAAGT 82771
||||| || |||| || ||||| |||| | ||||| | ||| ||| ||||| | |||
Sbjct 678659 TTATCCTGGATCTCGGCCTTTACGCTTTCTACAGTATC-TGAGGATTCAACTTCGACAGT 678601
Query 82772 TATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810
|| ||||| || ||| | | |||| ||||||||
Sbjct 678600 GATGGTCTTCCCCATCAGCACTGTCACAAGAATCTGCAT 678562
>seq1347
Length=544027
Score = 89.7 bits (98), Expect = 1e-12
Identities = 144/205 (70%), Gaps = 3/205 (1%)
Strand=Plus/Plus
Query 82609 GCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGTT 82668
|||| | || ||||||| || | || ||||| ||| | || |||||||| |
Sbjct 219214 GCAGGATTGACTCTTTCTAGATGCTGTAGTCAGAAAGAGTGGGGCCATCTTCTAGCTCGC 219273
Query 82669 TTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTT- 82727
| || |||||||| || || || || || || | || |||| ||||| || |||||
Sbjct 219274 TGCCTGCAAAGATGAGCCTCTGCTGGTCAGGGGAGATGACTTCTTTATCCTGGATCTTAT 219333
Query 82728 -GCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGT 82786
||||| ||||||||||| || ||| | | | || |||| ||| || ||||||| ||
Sbjct 219334 AGCTTTCACATTTTCAATAGTGTCACTGTGCCCCACCTCCAGAGTAATGATCTTGCCAGT 219393
Query 82787 CAACGTCTTTACAAATATCTGCATT 82811
||| ||||| | || || ||||||
Sbjct 219394 CAAGGTCTTCA-GAAGATTTGCATT 219417
>seq8
Length=5331620
Score = 84.2 bits (92), Expect = 4e-11
Identities = 124/176 (70%), Gaps = 0/176 (0%)
Strand=Plus/Minus
Query 82635 TAATCAGATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGA 82694
|| ||||| | | | | || |||| ||||| || | || ||||| ||||| || |||
Sbjct 5215754 TAGTCAGACAAAGTACATCCATCTTGCAGTTGCTTGCTGGCCAAGATCAGTCTCTGCTGA 5215695
Query 82695 TCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTA 82754
|| ||| | |||||||||||||| | |||||| || ||||||||| || |||||
Sbjct 5215694 TCGGGAAGAATTCCTTCCTTATCCTAAATCTTGGCCTTTACATTTCTTATTGTATCCAAG 5215635
Query 82755 GGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810
| ||| || | | || || |||| ||| | | || || || || ||||||||
Sbjct 5215634 GTTTCAACCACGAGAGGGATAATCTTCCCTATAAGGGTTTTCACGAAAATCTGCAT 5215579
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 980802372757313
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |