Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ailuropoda_20melanoleuca_20[refseq_20GCF_5F000004335.2_202009-12-15] 81,467 sequences; 2,299,509,015 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq456 129 6e-25 seq17 100 3e-16 seq861 91.5 1e-13 seq3057 82.4 7e-11 >seq456 Length=1409724 Score = 129 bits (142), Expect = 6e-25 Identities = 150/200 (75%), Gaps = 2/200 (1%) Strand=Plus/Minus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521 ||| ||||||||||| || |||||||| | ||| | | | || || |||||||||| Sbjct 1113608 GGTCGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCA-TCTTCCAGCTGCTTGC 1113550 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | || | ||||||| ||||||||| || |||||||| || || || |||||| || Sbjct 1113549 CTGCAAAGATGAGCCTCTGCTGGTCAGGGGGGATGCCCTCTTTATCTTGGATCTTGGCCT 1113490 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 | | | ||| | ||||| |||||||||| || | ||||| ||| ||||| ||||| | Sbjct 1113489 TCACATTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCAGTCAGGG 1113430 Query 133642 TTTTTACGAAAATCTGCATG 133661 | || ||||| ||||||||| Sbjct 1113429 TCTTCACGAAGATCTGCATG 1113410 Score = 129 bits (142), Expect = 6e-25 Identities = 150/200 (75%), Gaps = 2/200 (1%) Strand=Plus/Minus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521 ||| ||||||||||| || |||||||| | ||| | | | || || |||||||||| Sbjct 1113836 GGTCGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCA-TCTTCCAGCTGCTTGC 1113778 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | || | ||||||| ||||||||| || |||||||| || || || |||||| || Sbjct 1113777 CTGCAAAGATGAGCCTCTGCTGGTCAGGGGGGATGCCCTCTTTATCTTGGATCTTGGCCT 1113718 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 | | | ||| | ||||| |||||||||| || | ||||| ||| ||||| ||||| | Sbjct 1113717 TCACATTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCAGTCAGGG 1113658 Query 133642 TTTTTACGAAAATCTGCATG 133661 | || ||||| ||||||||| Sbjct 1113657 TCTTCACGAAGATCTGCATG 1113638 Score = 129 bits (142), Expect = 6e-25 Identities = 150/200 (75%), Gaps = 2/200 (1%) Strand=Plus/Minus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521 ||| ||||||||||| || |||||||| | ||| | | | || || |||||||||| Sbjct 1114064 GGTCGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCA-TCTTCCAGCTGCTTGC 1114006 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | || | ||||||| ||||||||| || |||||||| || || || |||||| || Sbjct 1114005 CTGCAAAGATGAGCCTCTGCTGGTCAGGGGGGATGCCCTCTTTATCTTGGATCTTGGCCT 1113946 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 | | | ||| | ||||| |||||||||| || | ||||| ||| ||||| ||||| | Sbjct 1113945 TCACATTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCAGTCAGGG 1113886 Query 133642 TTTTTACGAAAATCTGCATG 133661 | || ||||| ||||||||| Sbjct 1113885 TCTTCACGAAGATCTGCATG 1113866 Score = 127 bits (140), Expect = 2e-24 Identities = 149/199 (75%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521 ||| ||||||||||| || |||||||| | ||| | | | || || |||||||||| Sbjct 1113380 GGTCGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCA-TCTTCCAGCTGCTTGC 1113322 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | || | ||||||| ||||||||| || |||||||| || || || |||||| || Sbjct 1113321 CTGCAAAGATGAGCCTCTGCTGGTCAGGGGGGATGCCCTCTTTATCTTGGATCTTGGCCT 1113262 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 | | | ||| | ||||| |||||||||| || | ||||| ||| ||||| ||||| | Sbjct 1113261 TCACATTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCAGTCAGGG 1113202 Query 133642 TTTTTACGAAAATCTGCAT 133660 | || ||||| |||||||| Sbjct 1113201 TCTTCACGAAGATCTGCAT 1113183 Score = 127 bits (140), Expect = 2e-24 Identities = 149/199 (75%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 || ||||||||||| || |||||||| | ||| | | | || || ||||||||||| Sbjct 1114291 GTCGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCA-TCTTCCAGCTGCTTGCC 1114233 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 || | ||||||| ||||||||| || |||||||| || || || |||||| ||| Sbjct 1114232 TGCAAAGATGAGCCTCTGCTGGTCAGGGGGGATGCCCTCTTTATCTTGGATCTTGGCCTT 1114173 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 | | ||| | ||||| |||||||||| || | ||||| ||| ||||| ||||| || Sbjct 1114172 CACATTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCAGTCAGGGT 1114113 Query 133643 TTTTACGAAAATCTGCATG 133661 || ||||| ||||||||| Sbjct 1114112 CTTCACGAAGATCTGCATG 1114094 >seq17 Length=4663558 Score = 100 bits (110), Expect = 3e-16 Identities = 146/206 (71%), Gaps = 9/206 (4%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCCC 133523 ||||| || ||||| || ||||| || || ||| | || || ||||| || ||| Sbjct 4172543 GTGGATTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCTTCCAGCTGTTTCCCC 4172602 Query 133524 GCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGT-CGGT--------GATC 133574 || | || | || |||||||||||| |||||||| ||||||| | || |||| Sbjct 4172603 GCAAAGATCAACCTCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGTTTGTCCTGGATC 4172662 Query 133575 TTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCG 133634 || ||||| | ||| | |||||| | |||||||| || | ||||| ||| || || Sbjct 4172663 TTCGCCTTGACGTTCTCGATGGTGTCGCTTGGCTCCACCTCCAGGGTGATGGTCTTACCT 4172722 Query 133635 GTCAGAGTTTTTACGAAAATCTGCAT 133660 |||| || || ||||| |||||||| Sbjct 4172723 GTCAAGGTCTTCACGAAGATCTGCAT 4172748 >seq861 Length=883633 Score = 91.5 bits (100), Expect = 1e-13 Identities = 113/155 (73%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 133506 TCCTCGAGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTG 133565 || || ||||||||||| || | ||||||| ||||||| | || ||||||||||| || Sbjct 499565 TCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGCCAGGGGGGATGCCTTCTTTA 499506 Query 133566 TCGGTGATCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACG 133625 || | |||| ||| | | || | || ||| |||| |||| || | ||||| | Sbjct 499505 TCCTGGGTCTTGGCCTTCACATTCTTCATGGTATCGCTGGGTTCCAACTCCAGGGTGATG 499446 Query 133626 GTTTTGCCGGTCAGAGTTTTTACGAAAATCTGCAT 133660 || ||||||||||| || || ||||| | ||| || Sbjct 499445 GTCTTGCCGGTCAGGGTCTTCACGAAGACCTGTAT 499411 >seq3057 Length=47849 Score = 82.4 bits (90), Expect = 7e-11 Identities = 77/98 (79%), Gaps = 0/98 (0%) Strand=Plus/Minus Query 148866 TACTCTACGATCTCGGCGCACAGATTGCTGCATTTGATCACGCCCACGTTCTTTTGATTG 148925 |||||||| || || | |||||| ||||||||||||||| |||| ||||| || ||| Sbjct 4146 TACTCTACTATTTCTGTGCACAGGTTGCTGCATTTGATCGTTCCCAGGTTCTGCTGGTTG 4087 Query 148926 CTCTTGCTGTTGCACGCGTCCTTGTACAGCATGTACGG 148963 ||||| | || || | || ||||| ||||||||||| Sbjct 4086 CTCTTCCGATTACAGGAATCTTTGTAGAGCATGTACGG 4049 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 482928514471080