Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ailuropoda_20melanoleuca_20[refseq_20GCF_5F000004335.2_202009-12-15]
81,467 sequences; 2,299,509,015 total letters
Query= NC_024625.1
Length=151109
Score E
Sequences producing significant alignments: (Bits) Value
seq456 129 6e-25
seq17 100 3e-16
seq861 91.5 1e-13
seq3057 82.4 7e-11
>seq456
Length=1409724
Score = 129 bits (142), Expect = 6e-25
Identities = 150/200 (75%), Gaps = 2/200 (1%)
Strand=Plus/Minus
Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521
||| ||||||||||| || |||||||| | ||| | | | || || ||||||||||
Sbjct 1113608 GGTCGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCA-TCTTCCAGCTGCTTGC 1113550
Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581
| || | ||||||| ||||||||| || |||||||| || || || |||||| ||
Sbjct 1113549 CTGCAAAGATGAGCCTCTGCTGGTCAGGGGGGATGCCCTCTTTATCTTGGATCTTGGCCT 1113490
Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641
| | | ||| | ||||| |||||||||| || | ||||| ||| ||||| ||||| |
Sbjct 1113489 TCACATTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCAGTCAGGG 1113430
Query 133642 TTTTTACGAAAATCTGCATG 133661
| || ||||| |||||||||
Sbjct 1113429 TCTTCACGAAGATCTGCATG 1113410
Score = 129 bits (142), Expect = 6e-25
Identities = 150/200 (75%), Gaps = 2/200 (1%)
Strand=Plus/Minus
Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521
||| ||||||||||| || |||||||| | ||| | | | || || ||||||||||
Sbjct 1113836 GGTCGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCA-TCTTCCAGCTGCTTGC 1113778
Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581
| || | ||||||| ||||||||| || |||||||| || || || |||||| ||
Sbjct 1113777 CTGCAAAGATGAGCCTCTGCTGGTCAGGGGGGATGCCCTCTTTATCTTGGATCTTGGCCT 1113718
Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641
| | | ||| | ||||| |||||||||| || | ||||| ||| ||||| ||||| |
Sbjct 1113717 TCACATTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCAGTCAGGG 1113658
Query 133642 TTTTTACGAAAATCTGCATG 133661
| || ||||| |||||||||
Sbjct 1113657 TCTTCACGAAGATCTGCATG 1113638
Score = 129 bits (142), Expect = 6e-25
Identities = 150/200 (75%), Gaps = 2/200 (1%)
Strand=Plus/Minus
Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521
||| ||||||||||| || |||||||| | ||| | | | || || ||||||||||
Sbjct 1114064 GGTCGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCA-TCTTCCAGCTGCTTGC 1114006
Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581
| || | ||||||| ||||||||| || |||||||| || || || |||||| ||
Sbjct 1114005 CTGCAAAGATGAGCCTCTGCTGGTCAGGGGGGATGCCCTCTTTATCTTGGATCTTGGCCT 1113946
Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641
| | | ||| | ||||| |||||||||| || | ||||| ||| ||||| ||||| |
Sbjct 1113945 TCACATTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCAGTCAGGG 1113886
Query 133642 TTTTTACGAAAATCTGCATG 133661
| || ||||| |||||||||
Sbjct 1113885 TCTTCACGAAGATCTGCATG 1113866
Score = 127 bits (140), Expect = 2e-24
Identities = 149/199 (75%), Gaps = 2/199 (1%)
Strand=Plus/Minus
Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521
||| ||||||||||| || |||||||| | ||| | | | || || ||||||||||
Sbjct 1113380 GGTCGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCA-TCTTCCAGCTGCTTGC 1113322
Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581
| || | ||||||| ||||||||| || |||||||| || || || |||||| ||
Sbjct 1113321 CTGCAAAGATGAGCCTCTGCTGGTCAGGGGGGATGCCCTCTTTATCTTGGATCTTGGCCT 1113262
Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641
| | | ||| | ||||| |||||||||| || | ||||| ||| ||||| ||||| |
Sbjct 1113261 TCACATTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCAGTCAGGG 1113202
Query 133642 TTTTTACGAAAATCTGCAT 133660
| || ||||| ||||||||
Sbjct 1113201 TCTTCACGAAGATCTGCAT 1113183
Score = 127 bits (140), Expect = 2e-24
Identities = 149/199 (75%), Gaps = 2/199 (1%)
Strand=Plus/Minus
Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522
|| ||||||||||| || |||||||| | ||| | | | || || |||||||||||
Sbjct 1114291 GTCGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCA-TCTTCCAGCTGCTTGCC 1114233
Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582
|| | ||||||| ||||||||| || |||||||| || || || |||||| |||
Sbjct 1114232 TGCAAAGATGAGCCTCTGCTGGTCAGGGGGGATGCCCTCTTTATCTTGGATCTTGGCCTT 1114173
Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642
| | ||| | ||||| |||||||||| || | ||||| ||| ||||| ||||| ||
Sbjct 1114172 CACATTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCAGTCAGGGT 1114113
Query 133643 TTTTACGAAAATCTGCATG 133661
|| ||||| |||||||||
Sbjct 1114112 CTTCACGAAGATCTGCATG 1114094
>seq17
Length=4663558
Score = 100 bits (110), Expect = 3e-16
Identities = 146/206 (71%), Gaps = 9/206 (4%)
Strand=Plus/Plus
Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCCC 133523
||||| || ||||| || ||||| || || ||| | || || ||||| || |||
Sbjct 4172543 GTGGATTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCTTCCAGCTGTTTCCCC 4172602
Query 133524 GCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGT-CGGT--------GATC 133574
|| | || | || |||||||||||| |||||||| ||||||| | || ||||
Sbjct 4172603 GCAAAGATCAACCTCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGTTTGTCCTGGATC 4172662
Query 133575 TTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCG 133634
|| ||||| | ||| | |||||| | |||||||| || | ||||| ||| || ||
Sbjct 4172663 TTCGCCTTGACGTTCTCGATGGTGTCGCTTGGCTCCACCTCCAGGGTGATGGTCTTACCT 4172722
Query 133635 GTCAGAGTTTTTACGAAAATCTGCAT 133660
|||| || || ||||| ||||||||
Sbjct 4172723 GTCAAGGTCTTCACGAAGATCTGCAT 4172748
>seq861
Length=883633
Score = 91.5 bits (100), Expect = 1e-13
Identities = 113/155 (73%), Gaps = 0/155 (0%)
Strand=Plus/Minus
Query 133506 TCCTCGAGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTG 133565
|| || ||||||||||| || | ||||||| ||||||| | || ||||||||||| ||
Sbjct 499565 TCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGCCAGGGGGGATGCCTTCTTTA 499506
Query 133566 TCGGTGATCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACG 133625
|| | |||| ||| | | || | || ||| |||| |||| || | ||||| |
Sbjct 499505 TCCTGGGTCTTGGCCTTCACATTCTTCATGGTATCGCTGGGTTCCAACTCCAGGGTGATG 499446
Query 133626 GTTTTGCCGGTCAGAGTTTTTACGAAAATCTGCAT 133660
|| ||||||||||| || || ||||| | ||| ||
Sbjct 499445 GTCTTGCCGGTCAGGGTCTTCACGAAGACCTGTAT 499411
>seq3057
Length=47849
Score = 82.4 bits (90), Expect = 7e-11
Identities = 77/98 (79%), Gaps = 0/98 (0%)
Strand=Plus/Minus
Query 148866 TACTCTACGATCTCGGCGCACAGATTGCTGCATTTGATCACGCCCACGTTCTTTTGATTG 148925
|||||||| || || | |||||| ||||||||||||||| |||| ||||| || |||
Sbjct 4146 TACTCTACTATTTCTGTGCACAGGTTGCTGCATTTGATCGTTCCCAGGTTCTGCTGGTTG 4087
Query 148926 CTCTTGCTGTTGCACGCGTCCTTGTACAGCATGTACGG 148963
||||| | || || | || ||||| |||||||||||
Sbjct 4086 CTCTTCCGATTACAGGAATCTTTGTAGAGCATGTACGG 4049
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 482928514471080
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |