Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ailuropoda_20melanoleuca_20[refseq_20GCF_5F000004335.2_202009-12-15] 81,467 sequences; 2,299,509,015 total letters Query= NC_024696.1 Length=180800 Score E Sequences producing significant alignments: (Bits) Value seq810 297 2e-75 seq192 188 8e-43 seq1384 131 2e-25 seq1109 104 3e-17 >seq810 Length=940331 Score = 297 bits (328), Expect = 2e-75 Identities = 633/934 (68%), Gaps = 21/934 (2%) Strand=Plus/Minus Query 162059 CCAGGGACTTATGTCGGAGATACTCGTCTAGACACTGGACCGCGAACACGTCTCGTTCCT 162118 |||||| ||||| | |||| ||| || | |||||||| || || | ||| ||| Sbjct 565544 CCAGGGCTTTATGCCTCAGATGCTCATCCAAACACTGGATGGCAAAGAGGTCAATGTCCA 565485 Query 162119 CATCGAACTTGTTCGCGAACAGGTGATGCGAGTTCTTCAATATCCAATTAAGATCCCCCG 162178 || |||||||| || |||| ||||||| | | | || ||||| || | || || | Sbjct 565484 TGTCAAACTTGTTGGCAAACAAGTGATGCTTG--CGT-AACATCCAGTTCAAGTCACCTG 565428 Query 162179 ATCCGAACACGCACACGGACCGCACGTGCACGCCGCTGCACGGCGGATACAGGGCCCCAT 162238 ||||||||||||||| || |||||||| || || |||| || || || |||| || | Sbjct 565427 CTCCGAACACGCACACAGAACGCACGTGGACCCCATTGCAGGGTGGGTAGGGGGCACCCT 565368 Query 162239 CGTCCACATCCCCCTCGTAGTATTGCCACTTAACGAACCTAGTGATAGCCTGCATGTCGG 162298 | ||||| || ||| |||| ||||| || |||||||| | || || |||||||||| Sbjct 565367 TGGAAACATCACCTTCGAAGTACTGCCATTTGACGAACCTTGCAATCGCGTGCATGTCGG 565308 Query 162299 AGGTGTCGTACTTGTACACTGACGG-CACGGCTCCAGGAACACCCGGCAGTCTCTGTAGA 162357 | |||| ||||| | || | || || || || || ||| | || | ||||| | | Sbjct 565307 ACATGTCATACTTCTGG-CTTAGGGACAGGGAGCCCGGGACATCAGGGATCCTCTGGATA 565249 Query 162358 GTAGCCCACAGGTGTTCGTCTGGACTATACGTCTCCTTCGACCACTCCATGAACTCCCTG 162417 || ||||| || | || || || || ||||| || || | ||||||||| |||| | Sbjct 565248 GTGGCCCAGAGATACTCATCCGGGCTGTACGTGTCTTTTGCCCACTCCATAAACTTTTGG 565189 Query 162418 ACCGTTTTATCGTATAGAATGTAAGAGACGTAGGACCTGGTCACAATAAAGTACGCGCTA 162477 | ||| || | ||| | || ||||| ||| | || | || || || || Sbjct 565188 ATTTTTTCATTCTCTAGCACATACCCCACGTACTTCCTACTGACCACGAAATAGGCACTG 565129 Query 162478 CCAGAAAACACGGGTATGCGTATAGGAGGGGGCTCTTTGTCTTGACCCGTGTTGACTACC 162537 || ||||||| ||| | | ||||||| || |||||| |||||||| | | Sbjct 565128 CCTGAAAACAGAGGTGTTTCAAGAGGAGGGAGCATTTTGTCAGTCCCCGTGTTCGTCAGC 565069 Query 162538 ATTCCCTCTACGACCACGTGTCTCTTCCTCCACCTGGCCATCTTACTGGTAGACGGGTGT 162597 |||| | || || || ||| ||||||| | | ||| ||| |||| | Sbjct 565068 TTTCCGTTAACAACTGTGTAATGCTTTTTCCACCTTTCTTTTTTATTGG---ACGGCATT 565012 Query 162598 ---TCGGTCTCTAGACTGTTACGACCCCCCAAGGCCTTCAGCTGACGCACCATCTCTAGA 162654 || || ||||| |||| |||| || | ||| |||| | || || || | Sbjct 565011 CTCTCAGTTTCTAGGTTGTTTTCACCCATCAGCGACTTGAGCTTCTGGACAATTTCCAAG 564952 Query 162655 TTGGTCTTAAGGGGAAAGTCGGTGCCGCAGAGATTAATAACATATTTCCACTTAACGCTG 162714 ||||| |||| |||||||| | ||||| ||||| || | || ||||| | | || Sbjct 564951 TTGGTTTTAATAGGAAAGTCCATACCGCAAAGATTTATCAAGTACTTCCAGTCCGCACTC 564892 Query 162715 AGTCCGTACAGATCCTGTAGACAGTTCAGATCGGCCTGGACGCGACTCCACGACGCGTAC 162774 | | ||| | || || | ||||| || |||||||| || |||||||| || || ||| Sbjct 564891 ATCCTGTAGACGTCTTGCATGCAGTTGAGGTCGGCCTGAACCCGACTCCAAGAGGCATAC 564832 Query 162775 ACGACGCTCTCCAACCTAGTGGCGACAAAGACATTGTCGAAACACGAAACTATCCCCATC 162834 || || ||||||| | | |||| |||||||| || ||| || || | || || ||| Sbjct 564831 ACCACACTCTCCAGCTGACTGGCCACAAAGACGTTACTGAAGCAGGACGCGATGCCAATC 564772 Query 162835 AC---GGCCAGTGAGAAC--ATCGGGTCCGCTTTCCTATCTACGTGTACGCAGTATAGAT 162889 || ||||| | ||| ||||| | ||||| | || ||||| | |||||| | || Sbjct 564771 ACCGCGGCCA---AAAACGAATCGGCTGA-CTTTC-TGTCCACGTGAATGCAGTAGAAAT 564717 Query 162890 TCTGAGGGGCGTAGATGGCCCTCAGTAATCTCTCGAACATCTCTATCTTATGGTGTACCA 162949 |||| || ||||||||||||||| | | || | ||| || || || ||||| |||| Sbjct 564716 TCTGGGGCATGTAGATGGCCCTCAGGAGCCGGTCAAGCATTTCGATTTTGTGGTGAACCA 564657 Query 162950 CGATAGAATACGCTATGGGGAACTCAGCCTCCTC 162983 | || ||||| |||||||| ||||| ||||| || Sbjct 564656 CTATGGAATAGGCTATGGGAAACTCCGCCTCTTC 564623 >seq192 Length=2194266 Score = 188 bits (208), Expect = 8e-43 Identities = 218/294 (74%), Gaps = 0/294 (0%) Strand=Plus/Plus Query 171771 CATAGAGTGTCAGACAGGTCTTACCCGATATTTTTCCGGACCCAAAAGTATTAAACAAAC 171830 || |||| || || |||| | || || || || || || ||||||||||| || | | Sbjct 893923 CAGAGAGGGTGAGGCAGGCTGTTCCTGAGATCTTCCCAGAACCAAAAGTATTGAAGAGGC 893982 Query 171831 ACATAAAACAGCCTTCGTCCTCCACGGTGGTGTTCCAAAAAGTCAATGTAGAATTTCTGA 171890 || | |||| ||||| ||||||| |||||||||||| || || | || || || ||| Sbjct 893983 ACTTGTAACACCCTTCATCCTCCAGGGTGGTGTTCCAGAAGGTAATGGTTGAGTTCTTGA 894042 Query 171891 GTCCGAGTTGCGTAATGTTCACCCGGTCCTTGTACGGAGGCTGGACGACAACACCGTGAT 171950 || | || || || || || | | ||||||||| | ||||||||| || || || || | Sbjct 894043 GTTCCAGCTGGGTGATATTTATCTTGTCCTTGTAGGCAGGCTGGACCACGACCCCATGGT 894102 Query 171951 TCTCGCTGAACGTGGCCATGTTTTCGGGGCTCGTAGCCTTTATCTTCTGCCACGTTACTA 172010 ||| |||||| ||| |||||||||| ||||| | ||| | |||||||| || || | Sbjct 894103 TCTTGCTGAAGGTGACCATGTTTTCTGGGCTAACGGGCTTGACTTTCTGCCATGTCACAA 894162 Query 172011 TTAAAACTTCTTTGTCGGTTTGAAGAGAGCATCTTAAAGAAGCAGGTGTGTTCA 172064 | || ||||| | | |||| |||||||||||||| |||||||| ||||||| Sbjct 894163 TCAAGACTTCCTCGGAATTTTGCAGAGAGCATCTTAAGGAAGCAGGCGTGTTCA 894216 Score = 109 bits (120), Expect = 6e-19 Identities = 161/226 (71%), Gaps = 9/226 (4%) Strand=Plus/Plus Query 171528 TCCCCAAGTGTAAGACTTTGCATATCACCTCCTCGTTTCCCACTTGACTTTTAGGATCTT 171587 |||||| ||| | || | ||| | |||||||| | ||||| ||||| || || |||| Sbjct 891357 TCCCCAGGTGCAGCACCTGGCAGACCACCTCCT---TCCCCACCTGACTCTTGGGGTCTT 891413 Query 171588 TTACTTGAAGAATGCTAGTAACAGATGTAGTCCCGTTACGATGT---AGAACGGTTTTAG 171644 | || || || ||||| || ||||| || ||||| || | || ||||| | || Sbjct 891414 TGACCTGGAGGATGCTCGTGACAGACGTGGTCCCATTGGGGTGCGAGAGAACC---TCAG 891470 Query 171645 TACTATTTTCTATTCCGGATCCGGCAACTTTCCAAAATATAACAGGAGCTGGTCTAGCAG 171704 |||| ||||| || || || || | || ||||| | || ||||| ||||| | ||| Sbjct 891471 TACTGTTTTCAATCCCTGACCCAGACACCTTCCAGGAGATCACAGGGGCTGGGCGGGCAT 891530 Query 171705 TAGCAGAGCAAGTTATGTTTAATCCATCTTCGAAGAACTCATAGTG 171750 | ||||||||||| || |||| ||||||||||| | |||||| Sbjct 891531 TGGCAGAGCAAGTGATATTTAGGTGGTCTTCGAAGAATTTATAGTG 891576 >seq1384 Length=523537 Score = 131 bits (144), Expect = 2e-25 Identities = 391/592 (66%), Gaps = 15/592 (3%) Strand=Plus/Plus Query 176887 TCCAGTTAAAGTATTGAAGATAAAGGGTGACGTTTTTATCGATGGCGTTGAGGTGCGAGG 176946 ||||||||||||| ||| || || | |||||| || | | || || | | || Sbjct 150322 TCCAGTTAAAGTAACTAAGGTATAGCTTATTGTTTTTGTCAACTTCTTTCAGATACTTGG 150381 Query 176947 CCAGTTCTATAGGGGACGTGTAGTCGTTCACGTGAATGAAAGCGTCTCCCGGGACGTAAT 177006 | || || | || || | || || | |||||||||||| | ||| | || | |||| Sbjct 150382 CTAGCTCACTGGGAGAGTTATAATCTTCCACGTGAATGAATGAATCTGCTGGAATATAAT 150441 Query 177007 TTTCGTAATTCTCTCTCGATGTTCCGAGTACTATGGGTACCGCACCTGCCATAAGAGATC 177066 | || ||||| || || || | || || || | ||||| | || || | || || Sbjct 150442 TCTCATAATTTTCCCTAGACGGGCCCAGAACAACAGGTACAGAGCCAGCTAGAAAAGCAT 150501 Query 177067 GGTAGAGTTTTTCGGTAATATAGTCCCTGTGTACGGAGTTCTCAAACGCGAGATAGAATT 177126 ||||| ||||| || || || || |||| | ||||| ||||| | ||||| |||| Sbjct 150502 TATAGAGCTTTTCTGTGATGTAATCTTTGTGGATTGAGTTTTCAAAAGAAAGATAAAATT 150561 Query 177127 TACAGGAAGATA--GTAGCGGGATGAAGTCATCATCGGGTATATAATCTCCTACTACGTT 177184 | || | ||||| ||| || || || | | ||| | ||| ||||| | | | Sbjct 150562 TGCAAGTAGATATGGTA--GGAATCAAATTTTTATCATTCACATACTCTCCAAAGGCTTG 150619 Query 177185 CCCGTATACATGTATATCTATGTGTTTACTGAGCTCTAGGTAGTATCTCGA-TCTCACGT 177243 ||| || ||| || || ||| ||| || ||||| ||| || || || || | | Sbjct 150620 CCCATAGGTATGGATTTCAATGCTTTTGCTTAGCTCATTGTAATA-CTTGACCCTTGCAT 150678 Query 177244 GGTCGTTGTTCCAATTGCTGACGACCCAGCAAACTAACTTGCTCTTTGC-GGGAACGGGA 177302 | ||| |||||| || || || |||||||| || ||||| |||||| | || || Sbjct 150679 GCTCGGGGTTCCAGTTACTTACAACCCAGCACACCAACTT-CTCTTTACTTGGCAC---- 150733 Query 177303 TTC-GATACTAATGCAGTGTCT-CTGAGCGTTAGTGATCCATAGGGCACGTGAATATCCG 177360 ||| | || || | || | | || | ||| | | ||||| ||||| || ||||| | Sbjct 150734 TTCAAACACGAA-GGGGTTTGTGCTCACCGTCAAGAAGCCATAAGGCACTTGGATATCTG 150792 Query 177361 AGTCGCGTCTGTACGTTAACGTGAGATTGAAAAGGTTTTCTATACCTTGTTTGAAGGGGC 177420 ||||||| | ||| || | || | ||||| |||| ||||| || || ||| Sbjct 150793 AGTCGCGGCGGTAAGTCAGAGTCAAGTTGAACAGGTGCTCTATGCCACTCTTCTGGGGCG 150852 Query 177421 TGTTACTGGGCGATTCTAAGTTCATCCATATCCACTTTTGAAAGGTTGGTCT 177472 ||| | | || ||||| || |||||||| ||||| || || |||| ||| || Sbjct 150853 TGTGAGTTGGGGATTCCAAATTCATCCAAATCCATTTCTGGAAGGGTGGCCT 150904 >seq1109 Length=686466 Score = 104 bits (114), Expect = 3e-17 Identities = 228/336 (68%), Gaps = 8/336 (2%) Strand=Plus/Minus Query 162643 ACCATCTCTAGATTGGTCTTAAGGGGAAAGTCGGTGCCGCAGAGATTAATAACATATTTC 162702 |||||||| ||||||||| | |||||||| || || || ||| | | |||||| Sbjct 665223 ACCATCTCGGCATTGGTCTTTATAGGAAAGTCTGTCCCACACGTATTCAGTAAGTATTTC 665164 Query 162703 CACTTAACGCTGAG-TCCGTA-CAGATCCTGTAGACAGTTCAGATCGGCCTGGACGCGAC 162760 || | | ||||| || | | || |||| | |||||| || || ||||| || | Sbjct 665163 CA--TGGCACTGAGCTCTGGAGCAAGTCCTCCATACAGTTGAGGTCAGCCTGCACCCTGG 665106 Query 162761 TCCACGACGCGTACACGACGCTCTCCAACCTAGTGGCGACAAAGACATTGTCGAAACACG 162820 ||| || || || || || | ||||| || |||| | |||||||| ||| ||| Sbjct 665105 ACCAGGAGGCATAAACCACCCGAACCAACTTACTGGCTATGAAGACATTTGGGAAGCACA 665046 Query 162821 AAACTATCCCCATCACGGCCAGTGAGAACAT--CGGGTCCGCTTTCCTATCTACGTGTAC 162878 | || || || | || ||| | ||| | | || | |||| ||| || || || Sbjct 665045 ACACAATTGCCTTGACTGCCTCTTTGAAAGTTTCTGGG--GATTTCTCATCCACATGGAC 664988 Query 162879 GCAGTATAGATTCTGAGGGGCGTAGATGGCCCTCAGTAATCTCTCGAACATCTCTATCTT 162938 ||||| | ||||||||||| || | || | ||| | ||| ||||| |||||||||| Sbjct 664987 ACAGTAGATGTTCTGAGGGGCATACAAAGCTCGCAGCAGTCTTTCGAAGTTCTCTATCTT 664928 Query 162939 ATGGTGTACCACGATAGAATACGCTATGGGGAACTC 162974 | || ||||| ||||| ||||| || ||||| || Sbjct 664927 CTCATGGACCACCATAGAGTACGCGATAGGGAAGTC 664892 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 577842961003200