Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ailuropoda_20melanoleuca_20[refseq_20GCF_5F000004335.2_202009-12-15]
81,467 sequences; 2,299,509,015 total letters
Query= NC_024696.1
Length=180800
Score E
Sequences producing significant alignments: (Bits) Value
seq810 297 2e-75
seq192 188 8e-43
seq1384 131 2e-25
seq1109 104 3e-17
>seq810
Length=940331
Score = 297 bits (328), Expect = 2e-75
Identities = 633/934 (68%), Gaps = 21/934 (2%)
Strand=Plus/Minus
Query 162059 CCAGGGACTTATGTCGGAGATACTCGTCTAGACACTGGACCGCGAACACGTCTCGTTCCT 162118
|||||| ||||| | |||| ||| || | |||||||| || || | ||| |||
Sbjct 565544 CCAGGGCTTTATGCCTCAGATGCTCATCCAAACACTGGATGGCAAAGAGGTCAATGTCCA 565485
Query 162119 CATCGAACTTGTTCGCGAACAGGTGATGCGAGTTCTTCAATATCCAATTAAGATCCCCCG 162178
|| |||||||| || |||| ||||||| | | | || ||||| || | || || |
Sbjct 565484 TGTCAAACTTGTTGGCAAACAAGTGATGCTTG--CGT-AACATCCAGTTCAAGTCACCTG 565428
Query 162179 ATCCGAACACGCACACGGACCGCACGTGCACGCCGCTGCACGGCGGATACAGGGCCCCAT 162238
||||||||||||||| || |||||||| || || |||| || || || |||| || |
Sbjct 565427 CTCCGAACACGCACACAGAACGCACGTGGACCCCATTGCAGGGTGGGTAGGGGGCACCCT 565368
Query 162239 CGTCCACATCCCCCTCGTAGTATTGCCACTTAACGAACCTAGTGATAGCCTGCATGTCGG 162298
| ||||| || ||| |||| ||||| || |||||||| | || || ||||||||||
Sbjct 565367 TGGAAACATCACCTTCGAAGTACTGCCATTTGACGAACCTTGCAATCGCGTGCATGTCGG 565308
Query 162299 AGGTGTCGTACTTGTACACTGACGG-CACGGCTCCAGGAACACCCGGCAGTCTCTGTAGA 162357
| |||| ||||| | || | || || || || || ||| | || | ||||| | |
Sbjct 565307 ACATGTCATACTTCTGG-CTTAGGGACAGGGAGCCCGGGACATCAGGGATCCTCTGGATA 565249
Query 162358 GTAGCCCACAGGTGTTCGTCTGGACTATACGTCTCCTTCGACCACTCCATGAACTCCCTG 162417
|| ||||| || | || || || || ||||| || || | ||||||||| |||| |
Sbjct 565248 GTGGCCCAGAGATACTCATCCGGGCTGTACGTGTCTTTTGCCCACTCCATAAACTTTTGG 565189
Query 162418 ACCGTTTTATCGTATAGAATGTAAGAGACGTAGGACCTGGTCACAATAAAGTACGCGCTA 162477
| ||| || | ||| | || ||||| ||| | || | || || || ||
Sbjct 565188 ATTTTTTCATTCTCTAGCACATACCCCACGTACTTCCTACTGACCACGAAATAGGCACTG 565129
Query 162478 CCAGAAAACACGGGTATGCGTATAGGAGGGGGCTCTTTGTCTTGACCCGTGTTGACTACC 162537
|| ||||||| ||| | | ||||||| || |||||| |||||||| | |
Sbjct 565128 CCTGAAAACAGAGGTGTTTCAAGAGGAGGGAGCATTTTGTCAGTCCCCGTGTTCGTCAGC 565069
Query 162538 ATTCCCTCTACGACCACGTGTCTCTTCCTCCACCTGGCCATCTTACTGGTAGACGGGTGT 162597
|||| | || || || ||| ||||||| | | ||| ||| |||| |
Sbjct 565068 TTTCCGTTAACAACTGTGTAATGCTTTTTCCACCTTTCTTTTTTATTGG---ACGGCATT 565012
Query 162598 ---TCGGTCTCTAGACTGTTACGACCCCCCAAGGCCTTCAGCTGACGCACCATCTCTAGA 162654
|| || ||||| |||| |||| || | ||| |||| | || || || |
Sbjct 565011 CTCTCAGTTTCTAGGTTGTTTTCACCCATCAGCGACTTGAGCTTCTGGACAATTTCCAAG 564952
Query 162655 TTGGTCTTAAGGGGAAAGTCGGTGCCGCAGAGATTAATAACATATTTCCACTTAACGCTG 162714
||||| |||| |||||||| | ||||| ||||| || | || ||||| | | ||
Sbjct 564951 TTGGTTTTAATAGGAAAGTCCATACCGCAAAGATTTATCAAGTACTTCCAGTCCGCACTC 564892
Query 162715 AGTCCGTACAGATCCTGTAGACAGTTCAGATCGGCCTGGACGCGACTCCACGACGCGTAC 162774
| | ||| | || || | ||||| || |||||||| || |||||||| || || |||
Sbjct 564891 ATCCTGTAGACGTCTTGCATGCAGTTGAGGTCGGCCTGAACCCGACTCCAAGAGGCATAC 564832
Query 162775 ACGACGCTCTCCAACCTAGTGGCGACAAAGACATTGTCGAAACACGAAACTATCCCCATC 162834
|| || ||||||| | | |||| |||||||| || ||| || || | || || |||
Sbjct 564831 ACCACACTCTCCAGCTGACTGGCCACAAAGACGTTACTGAAGCAGGACGCGATGCCAATC 564772
Query 162835 AC---GGCCAGTGAGAAC--ATCGGGTCCGCTTTCCTATCTACGTGTACGCAGTATAGAT 162889
|| ||||| | ||| ||||| | ||||| | || ||||| | |||||| | ||
Sbjct 564771 ACCGCGGCCA---AAAACGAATCGGCTGA-CTTTC-TGTCCACGTGAATGCAGTAGAAAT 564717
Query 162890 TCTGAGGGGCGTAGATGGCCCTCAGTAATCTCTCGAACATCTCTATCTTATGGTGTACCA 162949
|||| || ||||||||||||||| | | || | ||| || || || ||||| ||||
Sbjct 564716 TCTGGGGCATGTAGATGGCCCTCAGGAGCCGGTCAAGCATTTCGATTTTGTGGTGAACCA 564657
Query 162950 CGATAGAATACGCTATGGGGAACTCAGCCTCCTC 162983
| || ||||| |||||||| ||||| ||||| ||
Sbjct 564656 CTATGGAATAGGCTATGGGAAACTCCGCCTCTTC 564623
>seq192
Length=2194266
Score = 188 bits (208), Expect = 8e-43
Identities = 218/294 (74%), Gaps = 0/294 (0%)
Strand=Plus/Plus
Query 171771 CATAGAGTGTCAGACAGGTCTTACCCGATATTTTTCCGGACCCAAAAGTATTAAACAAAC 171830
|| |||| || || |||| | || || || || || || ||||||||||| || | |
Sbjct 893923 CAGAGAGGGTGAGGCAGGCTGTTCCTGAGATCTTCCCAGAACCAAAAGTATTGAAGAGGC 893982
Query 171831 ACATAAAACAGCCTTCGTCCTCCACGGTGGTGTTCCAAAAAGTCAATGTAGAATTTCTGA 171890
|| | |||| ||||| ||||||| |||||||||||| || || | || || || |||
Sbjct 893983 ACTTGTAACACCCTTCATCCTCCAGGGTGGTGTTCCAGAAGGTAATGGTTGAGTTCTTGA 894042
Query 171891 GTCCGAGTTGCGTAATGTTCACCCGGTCCTTGTACGGAGGCTGGACGACAACACCGTGAT 171950
|| | || || || || || | | ||||||||| | ||||||||| || || || || |
Sbjct 894043 GTTCCAGCTGGGTGATATTTATCTTGTCCTTGTAGGCAGGCTGGACCACGACCCCATGGT 894102
Query 171951 TCTCGCTGAACGTGGCCATGTTTTCGGGGCTCGTAGCCTTTATCTTCTGCCACGTTACTA 172010
||| |||||| ||| |||||||||| ||||| | ||| | |||||||| || || |
Sbjct 894103 TCTTGCTGAAGGTGACCATGTTTTCTGGGCTAACGGGCTTGACTTTCTGCCATGTCACAA 894162
Query 172011 TTAAAACTTCTTTGTCGGTTTGAAGAGAGCATCTTAAAGAAGCAGGTGTGTTCA 172064
| || ||||| | | |||| |||||||||||||| |||||||| |||||||
Sbjct 894163 TCAAGACTTCCTCGGAATTTTGCAGAGAGCATCTTAAGGAAGCAGGCGTGTTCA 894216
Score = 109 bits (120), Expect = 6e-19
Identities = 161/226 (71%), Gaps = 9/226 (4%)
Strand=Plus/Plus
Query 171528 TCCCCAAGTGTAAGACTTTGCATATCACCTCCTCGTTTCCCACTTGACTTTTAGGATCTT 171587
|||||| ||| | || | ||| | |||||||| | ||||| ||||| || || ||||
Sbjct 891357 TCCCCAGGTGCAGCACCTGGCAGACCACCTCCT---TCCCCACCTGACTCTTGGGGTCTT 891413
Query 171588 TTACTTGAAGAATGCTAGTAACAGATGTAGTCCCGTTACGATGT---AGAACGGTTTTAG 171644
| || || || ||||| || ||||| || ||||| || | || ||||| | ||
Sbjct 891414 TGACCTGGAGGATGCTCGTGACAGACGTGGTCCCATTGGGGTGCGAGAGAACC---TCAG 891470
Query 171645 TACTATTTTCTATTCCGGATCCGGCAACTTTCCAAAATATAACAGGAGCTGGTCTAGCAG 171704
|||| ||||| || || || || | || ||||| | || ||||| ||||| | |||
Sbjct 891471 TACTGTTTTCAATCCCTGACCCAGACACCTTCCAGGAGATCACAGGGGCTGGGCGGGCAT 891530
Query 171705 TAGCAGAGCAAGTTATGTTTAATCCATCTTCGAAGAACTCATAGTG 171750
| ||||||||||| || |||| ||||||||||| | ||||||
Sbjct 891531 TGGCAGAGCAAGTGATATTTAGGTGGTCTTCGAAGAATTTATAGTG 891576
>seq1384
Length=523537
Score = 131 bits (144), Expect = 2e-25
Identities = 391/592 (66%), Gaps = 15/592 (3%)
Strand=Plus/Plus
Query 176887 TCCAGTTAAAGTATTGAAGATAAAGGGTGACGTTTTTATCGATGGCGTTGAGGTGCGAGG 176946
||||||||||||| ||| || || | |||||| || | | || || | | ||
Sbjct 150322 TCCAGTTAAAGTAACTAAGGTATAGCTTATTGTTTTTGTCAACTTCTTTCAGATACTTGG 150381
Query 176947 CCAGTTCTATAGGGGACGTGTAGTCGTTCACGTGAATGAAAGCGTCTCCCGGGACGTAAT 177006
| || || | || || | || || | |||||||||||| | ||| | || | ||||
Sbjct 150382 CTAGCTCACTGGGAGAGTTATAATCTTCCACGTGAATGAATGAATCTGCTGGAATATAAT 150441
Query 177007 TTTCGTAATTCTCTCTCGATGTTCCGAGTACTATGGGTACCGCACCTGCCATAAGAGATC 177066
| || ||||| || || || | || || || | ||||| | || || | || ||
Sbjct 150442 TCTCATAATTTTCCCTAGACGGGCCCAGAACAACAGGTACAGAGCCAGCTAGAAAAGCAT 150501
Query 177067 GGTAGAGTTTTTCGGTAATATAGTCCCTGTGTACGGAGTTCTCAAACGCGAGATAGAATT 177126
||||| ||||| || || || || |||| | ||||| ||||| | ||||| ||||
Sbjct 150502 TATAGAGCTTTTCTGTGATGTAATCTTTGTGGATTGAGTTTTCAAAAGAAAGATAAAATT 150561
Query 177127 TACAGGAAGATA--GTAGCGGGATGAAGTCATCATCGGGTATATAATCTCCTACTACGTT 177184
| || | ||||| ||| || || || | | ||| | ||| ||||| | | |
Sbjct 150562 TGCAAGTAGATATGGTA--GGAATCAAATTTTTATCATTCACATACTCTCCAAAGGCTTG 150619
Query 177185 CCCGTATACATGTATATCTATGTGTTTACTGAGCTCTAGGTAGTATCTCGA-TCTCACGT 177243
||| || ||| || || ||| ||| || ||||| ||| || || || || | |
Sbjct 150620 CCCATAGGTATGGATTTCAATGCTTTTGCTTAGCTCATTGTAATA-CTTGACCCTTGCAT 150678
Query 177244 GGTCGTTGTTCCAATTGCTGACGACCCAGCAAACTAACTTGCTCTTTGC-GGGAACGGGA 177302
| ||| |||||| || || || |||||||| || ||||| |||||| | || ||
Sbjct 150679 GCTCGGGGTTCCAGTTACTTACAACCCAGCACACCAACTT-CTCTTTACTTGGCAC---- 150733
Query 177303 TTC-GATACTAATGCAGTGTCT-CTGAGCGTTAGTGATCCATAGGGCACGTGAATATCCG 177360
||| | || || | || | | || | ||| | | ||||| ||||| || ||||| |
Sbjct 150734 TTCAAACACGAA-GGGGTTTGTGCTCACCGTCAAGAAGCCATAAGGCACTTGGATATCTG 150792
Query 177361 AGTCGCGTCTGTACGTTAACGTGAGATTGAAAAGGTTTTCTATACCTTGTTTGAAGGGGC 177420
||||||| | ||| || | || | ||||| |||| ||||| || || |||
Sbjct 150793 AGTCGCGGCGGTAAGTCAGAGTCAAGTTGAACAGGTGCTCTATGCCACTCTTCTGGGGCG 150852
Query 177421 TGTTACTGGGCGATTCTAAGTTCATCCATATCCACTTTTGAAAGGTTGGTCT 177472
||| | | || ||||| || |||||||| ||||| || || |||| ||| ||
Sbjct 150853 TGTGAGTTGGGGATTCCAAATTCATCCAAATCCATTTCTGGAAGGGTGGCCT 150904
>seq1109
Length=686466
Score = 104 bits (114), Expect = 3e-17
Identities = 228/336 (68%), Gaps = 8/336 (2%)
Strand=Plus/Minus
Query 162643 ACCATCTCTAGATTGGTCTTAAGGGGAAAGTCGGTGCCGCAGAGATTAATAACATATTTC 162702
|||||||| ||||||||| | |||||||| || || || ||| | | ||||||
Sbjct 665223 ACCATCTCGGCATTGGTCTTTATAGGAAAGTCTGTCCCACACGTATTCAGTAAGTATTTC 665164
Query 162703 CACTTAACGCTGAG-TCCGTA-CAGATCCTGTAGACAGTTCAGATCGGCCTGGACGCGAC 162760
|| | | ||||| || | | || |||| | |||||| || || ||||| || |
Sbjct 665163 CA--TGGCACTGAGCTCTGGAGCAAGTCCTCCATACAGTTGAGGTCAGCCTGCACCCTGG 665106
Query 162761 TCCACGACGCGTACACGACGCTCTCCAACCTAGTGGCGACAAAGACATTGTCGAAACACG 162820
||| || || || || || | ||||| || |||| | |||||||| ||| |||
Sbjct 665105 ACCAGGAGGCATAAACCACCCGAACCAACTTACTGGCTATGAAGACATTTGGGAAGCACA 665046
Query 162821 AAACTATCCCCATCACGGCCAGTGAGAACAT--CGGGTCCGCTTTCCTATCTACGTGTAC 162878
| || || || | || ||| | ||| | | || | |||| ||| || || ||
Sbjct 665045 ACACAATTGCCTTGACTGCCTCTTTGAAAGTTTCTGGG--GATTTCTCATCCACATGGAC 664988
Query 162879 GCAGTATAGATTCTGAGGGGCGTAGATGGCCCTCAGTAATCTCTCGAACATCTCTATCTT 162938
||||| | ||||||||||| || | || | ||| | ||| ||||| ||||||||||
Sbjct 664987 ACAGTAGATGTTCTGAGGGGCATACAAAGCTCGCAGCAGTCTTTCGAAGTTCTCTATCTT 664928
Query 162939 ATGGTGTACCACGATAGAATACGCTATGGGGAACTC 162974
| || ||||| ||||| ||||| || ||||| ||
Sbjct 664927 CTCATGGACCACCATAGAGTACGCGATAGGGAAGTC 664892
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 577842961003200
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