Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ailuropoda_20melanoleuca_20[refseq_20GCF_5F000004335.2_202009-12-15] 81,467 sequences; 2,299,509,015 total letters Query= NC_026421.1 Length=182380 Score E Sequences producing significant alignments: (Bits) Value seq192 284 1e-71 seq592 185 1e-41 seq328 159 4e-34 seq11 152 6e-32 seq2546 111 2e-19 seq364 95.1 1e-14 seq306 82.4 9e-11 >seq192 Length=2194266 Score = 284 bits (314), Expect = 1e-71 Identities = 255/320 (80%), Gaps = 0/320 (0%) Strand=Plus/Minus Query 171072 GTGGTGACCCAGGATGAGAGGGTGCTGCTGAACACGCCAGCCTCCCTGAAATGCTCCCTG 171131 ||||||||||| |||| | ||| |||||||||||| || ||| | | |||||| ||| Sbjct 894244 GTGGTGACCCAAAATGAAAAAATGCCGCTGAACACGCCTGCTTCCTTAAGATGCTCTCTG 894185 Query 171132 CAGACTTCTCAGGAGGTGCTGATTGTCACCTGGCAGAAAATCAAGCCCACCATTCCAGAG 171191 || | ||| |||| || ||||||| || ||||||||| |||||||| | ||||| Sbjct 894184 CAAAATTCCGAGGAAGTCTTGATTGTGACATGGCAGAAAGTCAAGCCCGTTAGCCCAGAA 894125 Query 171192 AACATGATAACTTTTAGCAAAGACCACGGGGTGGTGGTCCAGCCGGCTTATAAGGACAAG 171251 |||||| | || || ||||| |||| ||||| ||||||||||| || || ||||||||| Sbjct 894124 AACATGGTCACCTTCAGCAAGAACCATGGGGTCGTGGTCCAGCCTGCCTACAAGGACAAG 894065 Query 171252 ATAAACATCACCCAGCTTGGACTCCAAAACTCAACCATCACTTTTTGGAATACCACCTTA 171311 ||||| ||||||||||| | |||| | ||||||||||| || || ||||| |||||| | Sbjct 894064 ATAAATATCACCCAGCTGGAACTCAAGAACTCAACCATTACCTTCTGGAACACCACCCTG 894005 Query 171312 GAGGACGAGGGGTGCTACAACTGCCTCTTTAACACCTTTGGGTCTGGGAAAATCTCGGGG 171371 ||||| || ||||| ||||| |||||||| || || ||||| |||||||| ||||| || Sbjct 894004 GAGGATGAAGGGTGTTACAAGTGCCTCTTCAATACTTTTGGTTCTGGGAAGATCTCAGGA 893945 Query 171372 GTGGCCTGCCTCACCCTCTC 171391 ||||||||||||||||| Sbjct 893944 ACAGCCTGCCTCACCCTCTC 893925 Score = 214 bits (236), Expect = 2e-50 Identities = 199/253 (79%), Gaps = 0/253 (0%) Strand=Plus/Minus Query 171388 TCTCNGTGCAGCCCACTGTGTTTCTGCATTATAAATTTTTTGATGACCACCTGAACATCA 171447 || | || |||||||| ||||| || || |||||||| || || |||||||| || |||| Sbjct 891602 TCCCAGTACAGCCCACAGTGTTCCTTCACTATAAATTCTTCGAAGACCACCTAAATATCA 891543 Query 171448 CCTGTTCTGCCAATGCCCGCCCGCCACCTCAGATTTTTTGGAAGATTTCGGGGTCAGAAA 171507 | || ||||||||||||||||| | ||| ||| | |||||| | || ||||||| | Sbjct 891542 CTTGCTCTGCCAATGCCCGCCCAGCCCCTGTGATCTCCTGGAAGGTGTCTGGGTCAGGGA 891483 Query 171508 TTGAAAACAGTAGCGAGGTTCTTTCCCATTCTAATGGAACTACTTCTGTAACCAGTGTAC 171567 |||||||||||| |||||||| || || | ||||| || || ||||| || || | | Sbjct 891482 TTGAAAACAGTACTGAGGTTCTCTCGCACCCCAATGGGACCACGTCTGTCACGAGCATCC 891423 Query 171568 TCCAAGTTAAAGACCCCAAGAGTCAGTTGGGAAAGGAGGTTATCTGCCAAGTGTGGCACC 171627 |||| || |||||||||||||||||| |||| |||||||| ||||||| ||| ||||| Sbjct 891422 TCCAGGTCAAAGACCCCAAGAGTCAGGTGGGGAAGGAGGTGGTCTGCCAGGTGCTGCACC 891363 Query 171628 TGGGAAATGTAAC 171640 |||| || || || Sbjct 891362 TGGGGAAGGTGAC 891350 >seq592 Length=1169299 Score = 185 bits (204), Expect = 1e-41 Identities = 140/165 (85%), Gaps = 0/165 (0%) Strand=Plus/Plus Query 146982 CTTAAGGCCGGTCACGTGGGCCACCATGTAGGTGAGCAGCGAGTAGCTGGCTATGTTGAA 147041 ||| |||||||| | ||| || | ||||||||||||||| | ||||||||| |||||||| Sbjct 485543 CTTCAGGCCGGTGATGTGCGCAATCATGTAGGTGAGCAGGGCGTAGCTGGCGATGTTGAA 485602 Query 147042 GGGGACCCCCAGGCCCATGTCCCCCGACCTCTGGTACAGCTGGCACGAGAGCTCCCCGTC 147101 ||| || |||||||||||||||||||||||||||||||||||||| || ||||| |||| Sbjct 485603 GGGCACGCCCAGGCCCATGTCCCCCGACCTCTGGTACAGCTGGCAGGACAGCTCGCCGTT 485662 Query 147102 GGCCACGTAAAACTGGCACAGGATGTGGCACGGCGGCAGCGCCAT 147146 ||||||| |||||||| ||| |||||||| || || ||||| Sbjct 485663 CACCACGTAGAACTGGCAGAGGGCATGGCACGGAGGAAGGGCCAT 485707 Score = 87.8 bits (96), Expect = 2e-12 Identities = 125/172 (73%), Gaps = 3/172 (2%) Strand=Plus/Plus Query 147283 GCCCCAAAGTGCCTCCACTGGAAGCCGTACACTGGCCCCAGGTCGCCGGGCTTTCTG-TG 147341 |||||||| ||||||||||| ||||| || ||||| || | || || | |||| || Sbjct 488152 GCCCCAAAATGCCTCCACTGAAAGCCATAAACTGGGCCTAAATCCCCTTCTTCTCTGCTG 488211 Query 147342 CGAGAAGCCCGCCCGCTTGAGAAACTCGGGGGACCCGTGGGCGTCCCAGATGCCCACTCC 147401 | |||| ||| | | | || || | ||||| | |||||||||||| |||||| Sbjct 488212 C-AGAATCCCAGGCTGTCCAAGAAGTCTCGAGACCCATTGGCGTCCCAGATTTTCACTCC 488270 Query 147402 CTTGGCGGAGAGCTCCTTAGAGTCCGTGGAGCCCCGGATGA-ACCAGAGCAG 147452 ||||| || |||||||||| || ||||| ||| ||| || | ||||||| Sbjct 488271 CTTGGAAGACAGCTCCTTAGCGTTTGTGGACCCCTGGAAGACAGGAGAGCAG 488322 >seq328 Length=1672696 Score = 159 bits (176), Expect = 4e-34 Identities = 134/167 (80%), Gaps = 12/167 (7%) Strand=Plus/Plus Query 178231 AGGGTTACTTGGGTTGCCAGGCCTTGTCAGAGATGATTCAGTTTTACTTGGAGGAGGTGA 178290 |||||||| |||||||||| |||||||| |||||||| |||||||||||||||||||||| Sbjct 136830 AGGGTTACCTGGGTTGCCAAGCCTTGTCGGAGATGATCCAGTTTTACTTGGAGGAGGTGA 136889 Query 178291 TGCCTCAGGCCGAGAATCACAGCGGGGGTGGAGGCCCGGACATTAAGGAGCATGTAAACT 178350 |||| ||||| ||||| ||| | ||| ||||| |||||||| || |||| Sbjct 136890 TGCCCCAGGCTGAGAACCAC------------GACCCAGACATCAAGGAGCACGTGAACT 136937 Query 178351 CTCTGGGGGAAAAGCTAAAGACCCTTAGAGTGAGGCTGCGGCGATGT 178397 | |||||||||||||| ||||| || | |||||||||| || ||| Sbjct 136938 CCCTGGGGGAAAAGCTGAAGACTCTGCGGCTGAGGCTGCGCCGCTGT 136984 Score = 87.8 bits (96), Expect = 2e-12 Identities = 66/78 (85%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 178462 AGCTTCAAGAAAAGGGTGTTTACAAAGCTATGAGTGAGTTTGATATTTTTATTAACTACA 178521 |||| ||||| | ||||| |||||||| |||||||||||||| || || || ||||||| Sbjct 139143 AGCTCCAAGAGAGAGGTGTCTACAAAGCCATGAGTGAGTTTGACATCTTCATCAACTACA 139202 Query 178522 TAGAAGCTTACATGACAA 178539 ||||| | |||||||||| Sbjct 139203 TAGAAACCTACATGACAA 139220 >seq11 Length=5147107 Score = 152 bits (168), Expect = 6e-32 Identities = 537/827 (65%), Gaps = 45/827 (5%) Strand=Plus/Plus Query 8610 GTACTCTCTGGTGTTTTTGTTTGGGCTAATTGGCAATGCCCTGGTGATCCTAGTCCTCAT 8669 |||||| |||||||| || | ||||| | ||||||||| |||| | || | |||| Sbjct 3789121 GTACTCCCTGGTGTTCGTGGTCGGGCTGCTGGGCAATGCCGTGGTAGTTCTGATACTCAC 3789180 Query 8670 AAAGTACAAGAGGCTCAGGATCATGACCAACATCTTCCTGTTCAACCTGGCCCTTGGTGA 8729 || ||||||| |||| ||| |||||||||||||||||| ||||| |||| || || Sbjct 3789181 GAAATACAAGAAGCTCCAGATTATGACCAACATCTTCCTGCTCAACTTGGCTATTTCGGA 3789240 Query 8730 CCTGCTGCTGATTTTCACCCTCCCCTTTTGGATTCACTTCCACTCGGGGGGAACTGGTGG 8789 | |||| | | |||||||| || ||| ||||| | |||| ||| |||| || Sbjct 3789241 CTTGCTCTTTCTATTCACCCTGGTGTTCTGGGTTCAC-TACACT-GGGTGGAA----TGA 3789294 Query 8790 GTGGGACGCCGACCACCACATGTGTAAGTTTATAGTGGGCCTTTGCAACGTGGCACTGTA 8849 ||||| | || |||||||||| | | || |||| | |||| |||| Sbjct 3789295 GTGGGTTTTTGGCCCTTTCATGTGTAAGCTCCTCTCCGGGCTTTATTATGTGGGCTTGTA 3789354 Query 8850 CAGCGAAGTCCTGTTTATCATCCTGTTGACTCTGGACAGGTATCTTGCAGTTGTGTACGC 8909 |||||| || | || ||||||||| ||||| | |||||||| || || | || |||| Sbjct 3789355 CAGCGAGATCTTTTTCATCATCCTGCTGACTGTAGACAGGTACCTGGCCATCGTCCACGC 3789414 Query 8910 GGTGGCTTACAGGCTGGTCCGCGTGGTACCAATAGGCATCCTCGCCAGCCTCCTGGCCTG 8969 ||| | | | | ||| || | | || || || | || |||| |||| Sbjct 3789415 CGTGTTTGCCCTTCGAGCCCGGACTGTCACTTTTGGTGTCATCACGAGTGTCCTCACCTG 3789474 Query 8970 GATTCTGGCTGTGTTGGGAACCATGCCAGAGTTTATCTTTTATGAATCCAATAATGCCAC 9029 | ||||| | | | | | || | || ||||||||||| || | ||| || | | Sbjct 3789475 GGGCCTGGCAGGGCTAGCAGCCCTCCCTGAGTTTATCTTCCATAAGTCC--CAAGACGAG 3789532 Query 9030 AGGCA--AGGGGGTCTGCCAAGCCTC-CTACAC------------AGACTTTTGGAAGGG 9074 | || | ||||| | ||||| ||| | |||| |||||| | Sbjct 3789533 GGCCAACATTTTGTCTG-CTTGCCTCTTTACCCAAAAGACCAAGAAGACAAATGGAAGCG 3789591 Query 9075 GGTTGATGTTACCAGCATGA----CCATGGTCACCCTCATCCTGCCTTTGCTTATCATGG 9130 | ||| | || |||| || |||| | || |||||| |||||||||||| Sbjct 3789592 TTTCCATGCTCTGAGAATGAATATCCTGGGTCTCGCT----CTGCCTCTGCTTATCATGG 3789647 Query 9131 CCTTCTGCTACTGGAAAATCATCAAGGTCCTCCTCA-AGGCCCACAACAGGTCGAGAAAC 9189 ||||||||| ||| || || || || | | |||| ||| || ||| Sbjct 3789648 TTGTCTGCTACTCTGGAATTATTAAAACGCTGCTGAGATGCCC----CAGTAAGAAAAAG 3789703 Query 9190 CTGCACGCCGTCAAGCTCATTTTGATCATGGTGGTGCTTTATTTTGTCTTTTGGATCCCC 9249 | ||| || ||||||||| |||| ||||| | | ||| | || |||| ||| Sbjct 3789704 TACAAGGCCATCCGGCTCATTTTTGTCATCATGGTGGTCTTTTTCATTTTCTGGACACCC 3789763 Query 9250 TACAACGTCCTGCTCATTTTACACACCTACCAAGAGGCCATTTTTG-GGCCAGACTGTGA 9308 |||||| | | ||| || | | | ||| | | | |||| |||||| ||||| Sbjct 3789764 TACAACCTGGTCCTCCTTCTCTCTGCTTTTCAAACGATCTTCTTTGAGGCCAG-TTGTGA 3789822 Query 9309 AGCGCGGCGCA---GGGTGGACATGGCCCTCTTGGTGGCTGAGATGATCGCCTGCACCCA 9365 || | ||| | ||||| ||||| | |||| | ||| ||||||||| ||| || Sbjct 3789823 ---GCAGAGCAAACAGCTGGACGTGGCCATGCAGGTGACAGAGGTGATCGCCTACACGCA 3789879 Query 9366 CTGCTGCGTCAACCCCGTCATCTACGCGTTTGTGGGCGAAAAGTTCC 9412 ||||||||||||||||||||||||||| || || || || | ||||| Sbjct 3789880 CTGCTGCGTCAACCCCGTCATCTACGCCTTCGTCGGGGAGAGGTTCC 3789926 Score = 91.5 bits (100), Expect = 2e-13 Identities = 115/158 (73%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 8610 GTACTCTCTGGTGTTTTTGTTTGGGCTAATTGGCAATGCCCTGGTGATCCTAGTCCTCAT 8669 |||||| |||||||| | | || | | ||||| |||||| |||| |||||||| Sbjct 3746535 GTACTCCCTGGTGTTCATCATCGGCGTGGTCGGCAACATCCTGGTTCTCCTGGTCCTCAT 3746476 Query 8670 AAAGTACAAGAGGCTCAGGATCATGACCAACATCTTCCTGTTCAACCTGGCCCTTGGTGA 8729 || ||||||||||| ||| | |||||| ||| | ||| | ||||||||| | || Sbjct 3746475 GCAGCACAAGAGGCTCCGGAGCGTGACCAGCATTTACCTCCTGAACCTGGCCATCTCGGA 3746416 Query 8730 CCTGCTGCTGATTTTCACCCTCCCCTTTTGGATTCACT 8767 |||||| | | ||||| || ||||| |||||| ||| Sbjct 3746415 CCTGCTCTTCCTCTTCACGCTGCCCTTCTGGATTGACT 3746378 Score = 82.4 bits (90), Expect = 9e-11 Identities = 72/90 (80%), Gaps = 0/90 (0%) Strand=Plus/Minus Query 9323 TGGACATGGCCCTCTTGGTGGCTGAGATGATCGCCTGCACCCACTGCTGCGTCAACCCCG 9382 ||||| ||||| | |||| | ||| ||||||||| ||| ||||||||||||||||| | Sbjct 3745819 TGGACCTGGCCATGCAGGTGACGGAGGTGATCGCCTACACGCACTGCTGCGTCAACCCTG 3745760 Query 9383 TCATCTACGCGTTTGTGGGCGAAAAGTTCC 9412 |||||||||| || || || || ||||| Sbjct 3745759 TCATCTACGCCTTCGTCGGGGAGCGGTTCC 3745730 >seq2546 Length=117691 Score = 111 bits (122), Expect = 2e-19 Identities = 167/235 (71%), Gaps = 7/235 (3%) Strand=Plus/Plus Query 146914 ATTTTCAGGGGCTCCACGTGGTTGAGGTAGACGTGCGCGTCCCCCAGGGTGTGCACAAAG 146973 |||||||| |||| ||||| || ||||| | || || || |||| || || || ||| Sbjct 106004 ATTTTCAGCAGCTCAACGTGATTCAGGTAAATATGTGCATCTCCCAAAGTATGTACGAAG 106063 Query 146974 TCCCCCGGCTTAAGGCCGGTCACGTGGGCCACCATGTAGGTGAGCAG---CGAGTAGCTG 147030 | | ||||| ||| | || | ||| || ||||||||||||||||| | | ||||| Sbjct 106064 TTAGCTGGCTTCAGGGCCGTGATGTGTGCGACCATGTAGGTGAGCAGGGCCTACGAGCTG 106123 Query 147031 GCTATGTTGAAGGGGACCCCCAGGCCCATGTCCCCCGACCTCTGGTACAGCTGGCACGAG 147090 || | |||| || || |||||||||||||| | | | || ||| ||| |||| || Sbjct 106124 GC---GATGAAAGGCACACCCAGGCCCATGTCTCACCA-CTGTGGCACAATGGGCAGGAC 106179 Query 147091 AGCTCCCCGTCGGCCACGTAAAACTGGCACAGGATGTGGCACGGCGGCAGCGCCA 147145 |||| || | ||||||| ||| ||| ||| ||||| || | ||| |||| Sbjct 106180 AGCTTGCCATTTACCACGTAGAACCAGCAAAGGGCATGGCAGGGAGCCAGGGCCA 106234 >seq364 Length=1593528 Score = 95.1 bits (104), Expect = 1e-14 Identities = 156/221 (71%), Gaps = 7/221 (3%) Strand=Plus/Minus Query 146872 ATCTTGAGCTTGGGGAAGGGTCGGGGGTTCCTGGCC--AGCTGAATTTTCAGGGGCTCCA 146929 || |||||||| ||||| || | | || || || ||||| |||||||| || || | Sbjct 169422 ATTTTGAGCTTCGGGAAAGGCCTTG--TTTCTTGCTGAAGCTGCATTTTCAGAGGTTCAA 169365 Query 146930 CGTGGTTGAGGTAGACGTGCGCGTCCCC-CAGGGTGTGCACAAAGTCCCCCGGCTTAAGG 146988 | || || ||||| | | || || | ||| ||| | || |||| || ||||| ||| Sbjct 169364 CATGATTCAGGTAAA--TACGTGTATCTTCAGAGTGCGTACCAAGTTGCCTGGCTTCAGG 169307 Query 146989 CCGGTCACGTGGGCCACCATGTAGGTGAGCAGCGAGTAGCTGGCTATGTTGAAGGGGACC 147048 || || | || || | || ||||| ||| | | | || ||| | |||||| || || Sbjct 169306 CCTGTGATATGTGCAATCACGTAGGCGAGTGGGGTGCGGCAGGCCAAGTTGAAAGGCACA 169247 Query 147049 CCCAGGCCCATGTCCCCCGACCTCTGGTACAGCTGGCACGA 147089 ||| ||||||||| || | |||| ||||||||||||| || Sbjct 169246 GCCAAGCCCATGTCTCCTGCCCTCCGGTACAGCTGGCAGGA 169206 >seq306 Length=1744638 Score = 82.4 bits (90), Expect = 9e-11 Identities = 108/150 (72%), Gaps = 0/150 (0%) Strand=Plus/Minus Query 8611 TACTCTCTGGTGTTTTTGTTTGGGCTAATTGGCAATGCCCTGGTGATCCTAGTCCTCATA 8670 ||||| ||||| ||| ||||||| || |||| ||| || ||||| | | ||||| | Sbjct 892854 TACTCCCTGGTCTTTCTGTTTGGCCTCCTTGGAAATTCCGTGGTGGTTGTGGTCCTGTTT 892795 Query 8671 AAGTACAAGAGGCTCAGGATCATGACCAACATCTTCCTGTTCAACCTGGCCCTTGGTGAC 8730 |||||||||||||||| | |||||| || | | ||| | ||||| ||| | ||| Sbjct 892794 AAGTACAAGAGGCTCAAGTCCATGACGGACGTGTACCTACTGAACCTTGCCATCTCAGAC 892735 Query 8731 CTGCTGCTGATTTTCACCCTCCCCTTTTGG 8760 ||||| | | || ||||||| || ||| Sbjct 892734 CTGCTCTTCGTGCTCTCCCTCCCTTTCTGG 892705 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 582893812288800