Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ailuropoda_20melanoleuca_20[refseq_20GCF_5F000004335.2_202009-12-15]
81,467 sequences; 2,299,509,015 total letters
Query= NC_026421.1
Length=182380
Score E
Sequences producing significant alignments: (Bits) Value
seq192 284 1e-71
seq592 185 1e-41
seq328 159 4e-34
seq11 152 6e-32
seq2546 111 2e-19
seq364 95.1 1e-14
seq306 82.4 9e-11
>seq192
Length=2194266
Score = 284 bits (314), Expect = 1e-71
Identities = 255/320 (80%), Gaps = 0/320 (0%)
Strand=Plus/Minus
Query 171072 GTGGTGACCCAGGATGAGAGGGTGCTGCTGAACACGCCAGCCTCCCTGAAATGCTCCCTG 171131
||||||||||| |||| | ||| |||||||||||| || ||| | | |||||| |||
Sbjct 894244 GTGGTGACCCAAAATGAAAAAATGCCGCTGAACACGCCTGCTTCCTTAAGATGCTCTCTG 894185
Query 171132 CAGACTTCTCAGGAGGTGCTGATTGTCACCTGGCAGAAAATCAAGCCCACCATTCCAGAG 171191
|| | ||| |||| || ||||||| || ||||||||| |||||||| | |||||
Sbjct 894184 CAAAATTCCGAGGAAGTCTTGATTGTGACATGGCAGAAAGTCAAGCCCGTTAGCCCAGAA 894125
Query 171192 AACATGATAACTTTTAGCAAAGACCACGGGGTGGTGGTCCAGCCGGCTTATAAGGACAAG 171251
|||||| | || || ||||| |||| ||||| ||||||||||| || || |||||||||
Sbjct 894124 AACATGGTCACCTTCAGCAAGAACCATGGGGTCGTGGTCCAGCCTGCCTACAAGGACAAG 894065
Query 171252 ATAAACATCACCCAGCTTGGACTCCAAAACTCAACCATCACTTTTTGGAATACCACCTTA 171311
||||| ||||||||||| | |||| | ||||||||||| || || ||||| |||||| |
Sbjct 894064 ATAAATATCACCCAGCTGGAACTCAAGAACTCAACCATTACCTTCTGGAACACCACCCTG 894005
Query 171312 GAGGACGAGGGGTGCTACAACTGCCTCTTTAACACCTTTGGGTCTGGGAAAATCTCGGGG 171371
||||| || ||||| ||||| |||||||| || || ||||| |||||||| ||||| ||
Sbjct 894004 GAGGATGAAGGGTGTTACAAGTGCCTCTTCAATACTTTTGGTTCTGGGAAGATCTCAGGA 893945
Query 171372 GTGGCCTGCCTCACCCTCTC 171391
|||||||||||||||||
Sbjct 893944 ACAGCCTGCCTCACCCTCTC 893925
Score = 214 bits (236), Expect = 2e-50
Identities = 199/253 (79%), Gaps = 0/253 (0%)
Strand=Plus/Minus
Query 171388 TCTCNGTGCAGCCCACTGTGTTTCTGCATTATAAATTTTTTGATGACCACCTGAACATCA 171447
|| | || |||||||| ||||| || || |||||||| || || |||||||| || ||||
Sbjct 891602 TCCCAGTACAGCCCACAGTGTTCCTTCACTATAAATTCTTCGAAGACCACCTAAATATCA 891543
Query 171448 CCTGTTCTGCCAATGCCCGCCCGCCACCTCAGATTTTTTGGAAGATTTCGGGGTCAGAAA 171507
| || ||||||||||||||||| | ||| ||| | |||||| | || ||||||| |
Sbjct 891542 CTTGCTCTGCCAATGCCCGCCCAGCCCCTGTGATCTCCTGGAAGGTGTCTGGGTCAGGGA 891483
Query 171508 TTGAAAACAGTAGCGAGGTTCTTTCCCATTCTAATGGAACTACTTCTGTAACCAGTGTAC 171567
|||||||||||| |||||||| || || | ||||| || || ||||| || || | |
Sbjct 891482 TTGAAAACAGTACTGAGGTTCTCTCGCACCCCAATGGGACCACGTCTGTCACGAGCATCC 891423
Query 171568 TCCAAGTTAAAGACCCCAAGAGTCAGTTGGGAAAGGAGGTTATCTGCCAAGTGTGGCACC 171627
|||| || |||||||||||||||||| |||| |||||||| ||||||| ||| |||||
Sbjct 891422 TCCAGGTCAAAGACCCCAAGAGTCAGGTGGGGAAGGAGGTGGTCTGCCAGGTGCTGCACC 891363
Query 171628 TGGGAAATGTAAC 171640
|||| || || ||
Sbjct 891362 TGGGGAAGGTGAC 891350
>seq592
Length=1169299
Score = 185 bits (204), Expect = 1e-41
Identities = 140/165 (85%), Gaps = 0/165 (0%)
Strand=Plus/Plus
Query 146982 CTTAAGGCCGGTCACGTGGGCCACCATGTAGGTGAGCAGCGAGTAGCTGGCTATGTTGAA 147041
||| |||||||| | ||| || | ||||||||||||||| | ||||||||| ||||||||
Sbjct 485543 CTTCAGGCCGGTGATGTGCGCAATCATGTAGGTGAGCAGGGCGTAGCTGGCGATGTTGAA 485602
Query 147042 GGGGACCCCCAGGCCCATGTCCCCCGACCTCTGGTACAGCTGGCACGAGAGCTCCCCGTC 147101
||| || |||||||||||||||||||||||||||||||||||||| || ||||| ||||
Sbjct 485603 GGGCACGCCCAGGCCCATGTCCCCCGACCTCTGGTACAGCTGGCAGGACAGCTCGCCGTT 485662
Query 147102 GGCCACGTAAAACTGGCACAGGATGTGGCACGGCGGCAGCGCCAT 147146
||||||| |||||||| ||| |||||||| || || |||||
Sbjct 485663 CACCACGTAGAACTGGCAGAGGGCATGGCACGGAGGAAGGGCCAT 485707
Score = 87.8 bits (96), Expect = 2e-12
Identities = 125/172 (73%), Gaps = 3/172 (2%)
Strand=Plus/Plus
Query 147283 GCCCCAAAGTGCCTCCACTGGAAGCCGTACACTGGCCCCAGGTCGCCGGGCTTTCTG-TG 147341
|||||||| ||||||||||| ||||| || ||||| || | || || | |||| ||
Sbjct 488152 GCCCCAAAATGCCTCCACTGAAAGCCATAAACTGGGCCTAAATCCCCTTCTTCTCTGCTG 488211
Query 147342 CGAGAAGCCCGCCCGCTTGAGAAACTCGGGGGACCCGTGGGCGTCCCAGATGCCCACTCC 147401
| |||| ||| | | | || || | ||||| | |||||||||||| ||||||
Sbjct 488212 C-AGAATCCCAGGCTGTCCAAGAAGTCTCGAGACCCATTGGCGTCCCAGATTTTCACTCC 488270
Query 147402 CTTGGCGGAGAGCTCCTTAGAGTCCGTGGAGCCCCGGATGA-ACCAGAGCAG 147452
||||| || |||||||||| || ||||| ||| ||| || | |||||||
Sbjct 488271 CTTGGAAGACAGCTCCTTAGCGTTTGTGGACCCCTGGAAGACAGGAGAGCAG 488322
>seq328
Length=1672696
Score = 159 bits (176), Expect = 4e-34
Identities = 134/167 (80%), Gaps = 12/167 (7%)
Strand=Plus/Plus
Query 178231 AGGGTTACTTGGGTTGCCAGGCCTTGTCAGAGATGATTCAGTTTTACTTGGAGGAGGTGA 178290
|||||||| |||||||||| |||||||| |||||||| ||||||||||||||||||||||
Sbjct 136830 AGGGTTACCTGGGTTGCCAAGCCTTGTCGGAGATGATCCAGTTTTACTTGGAGGAGGTGA 136889
Query 178291 TGCCTCAGGCCGAGAATCACAGCGGGGGTGGAGGCCCGGACATTAAGGAGCATGTAAACT 178350
|||| ||||| ||||| ||| | ||| ||||| |||||||| || ||||
Sbjct 136890 TGCCCCAGGCTGAGAACCAC------------GACCCAGACATCAAGGAGCACGTGAACT 136937
Query 178351 CTCTGGGGGAAAAGCTAAAGACCCTTAGAGTGAGGCTGCGGCGATGT 178397
| |||||||||||||| ||||| || | |||||||||| || |||
Sbjct 136938 CCCTGGGGGAAAAGCTGAAGACTCTGCGGCTGAGGCTGCGCCGCTGT 136984
Score = 87.8 bits (96), Expect = 2e-12
Identities = 66/78 (85%), Gaps = 0/78 (0%)
Strand=Plus/Plus
Query 178462 AGCTTCAAGAAAAGGGTGTTTACAAAGCTATGAGTGAGTTTGATATTTTTATTAACTACA 178521
|||| ||||| | ||||| |||||||| |||||||||||||| || || || |||||||
Sbjct 139143 AGCTCCAAGAGAGAGGTGTCTACAAAGCCATGAGTGAGTTTGACATCTTCATCAACTACA 139202
Query 178522 TAGAAGCTTACATGACAA 178539
||||| | ||||||||||
Sbjct 139203 TAGAAACCTACATGACAA 139220
>seq11
Length=5147107
Score = 152 bits (168), Expect = 6e-32
Identities = 537/827 (65%), Gaps = 45/827 (5%)
Strand=Plus/Plus
Query 8610 GTACTCTCTGGTGTTTTTGTTTGGGCTAATTGGCAATGCCCTGGTGATCCTAGTCCTCAT 8669
|||||| |||||||| || | ||||| | ||||||||| |||| | || | ||||
Sbjct 3789121 GTACTCCCTGGTGTTCGTGGTCGGGCTGCTGGGCAATGCCGTGGTAGTTCTGATACTCAC 3789180
Query 8670 AAAGTACAAGAGGCTCAGGATCATGACCAACATCTTCCTGTTCAACCTGGCCCTTGGTGA 8729
|| ||||||| |||| ||| |||||||||||||||||| ||||| |||| || ||
Sbjct 3789181 GAAATACAAGAAGCTCCAGATTATGACCAACATCTTCCTGCTCAACTTGGCTATTTCGGA 3789240
Query 8730 CCTGCTGCTGATTTTCACCCTCCCCTTTTGGATTCACTTCCACTCGGGGGGAACTGGTGG 8789
| |||| | | |||||||| || ||| ||||| | |||| ||| |||| ||
Sbjct 3789241 CTTGCTCTTTCTATTCACCCTGGTGTTCTGGGTTCAC-TACACT-GGGTGGAA----TGA 3789294
Query 8790 GTGGGACGCCGACCACCACATGTGTAAGTTTATAGTGGGCCTTTGCAACGTGGCACTGTA 8849
||||| | || |||||||||| | | || |||| | |||| ||||
Sbjct 3789295 GTGGGTTTTTGGCCCTTTCATGTGTAAGCTCCTCTCCGGGCTTTATTATGTGGGCTTGTA 3789354
Query 8850 CAGCGAAGTCCTGTTTATCATCCTGTTGACTCTGGACAGGTATCTTGCAGTTGTGTACGC 8909
|||||| || | || ||||||||| ||||| | |||||||| || || | || ||||
Sbjct 3789355 CAGCGAGATCTTTTTCATCATCCTGCTGACTGTAGACAGGTACCTGGCCATCGTCCACGC 3789414
Query 8910 GGTGGCTTACAGGCTGGTCCGCGTGGTACCAATAGGCATCCTCGCCAGCCTCCTGGCCTG 8969
||| | | | | ||| || | | || || || | || |||| ||||
Sbjct 3789415 CGTGTTTGCCCTTCGAGCCCGGACTGTCACTTTTGGTGTCATCACGAGTGTCCTCACCTG 3789474
Query 8970 GATTCTGGCTGTGTTGGGAACCATGCCAGAGTTTATCTTTTATGAATCCAATAATGCCAC 9029
| ||||| | | | | | || | || ||||||||||| || | ||| || | |
Sbjct 3789475 GGGCCTGGCAGGGCTAGCAGCCCTCCCTGAGTTTATCTTCCATAAGTCC--CAAGACGAG 3789532
Query 9030 AGGCA--AGGGGGTCTGCCAAGCCTC-CTACAC------------AGACTTTTGGAAGGG 9074
| || | ||||| | ||||| ||| | |||| |||||| |
Sbjct 3789533 GGCCAACATTTTGTCTG-CTTGCCTCTTTACCCAAAAGACCAAGAAGACAAATGGAAGCG 3789591
Query 9075 GGTTGATGTTACCAGCATGA----CCATGGTCACCCTCATCCTGCCTTTGCTTATCATGG 9130
| ||| | || |||| || |||| | || |||||| ||||||||||||
Sbjct 3789592 TTTCCATGCTCTGAGAATGAATATCCTGGGTCTCGCT----CTGCCTCTGCTTATCATGG 3789647
Query 9131 CCTTCTGCTACTGGAAAATCATCAAGGTCCTCCTCA-AGGCCCACAACAGGTCGAGAAAC 9189
||||||||| ||| || || || || | | |||| ||| || |||
Sbjct 3789648 TTGTCTGCTACTCTGGAATTATTAAAACGCTGCTGAGATGCCC----CAGTAAGAAAAAG 3789703
Query 9190 CTGCACGCCGTCAAGCTCATTTTGATCATGGTGGTGCTTTATTTTGTCTTTTGGATCCCC 9249
| ||| || ||||||||| |||| ||||| | | ||| | || |||| |||
Sbjct 3789704 TACAAGGCCATCCGGCTCATTTTTGTCATCATGGTGGTCTTTTTCATTTTCTGGACACCC 3789763
Query 9250 TACAACGTCCTGCTCATTTTACACACCTACCAAGAGGCCATTTTTG-GGCCAGACTGTGA 9308
|||||| | | ||| || | | | ||| | | | |||| |||||| |||||
Sbjct 3789764 TACAACCTGGTCCTCCTTCTCTCTGCTTTTCAAACGATCTTCTTTGAGGCCAG-TTGTGA 3789822
Query 9309 AGCGCGGCGCA---GGGTGGACATGGCCCTCTTGGTGGCTGAGATGATCGCCTGCACCCA 9365
|| | ||| | ||||| ||||| | |||| | ||| ||||||||| ||| ||
Sbjct 3789823 ---GCAGAGCAAACAGCTGGACGTGGCCATGCAGGTGACAGAGGTGATCGCCTACACGCA 3789879
Query 9366 CTGCTGCGTCAACCCCGTCATCTACGCGTTTGTGGGCGAAAAGTTCC 9412
||||||||||||||||||||||||||| || || || || | |||||
Sbjct 3789880 CTGCTGCGTCAACCCCGTCATCTACGCCTTCGTCGGGGAGAGGTTCC 3789926
Score = 91.5 bits (100), Expect = 2e-13
Identities = 115/158 (73%), Gaps = 0/158 (0%)
Strand=Plus/Minus
Query 8610 GTACTCTCTGGTGTTTTTGTTTGGGCTAATTGGCAATGCCCTGGTGATCCTAGTCCTCAT 8669
|||||| |||||||| | | || | | ||||| |||||| |||| ||||||||
Sbjct 3746535 GTACTCCCTGGTGTTCATCATCGGCGTGGTCGGCAACATCCTGGTTCTCCTGGTCCTCAT 3746476
Query 8670 AAAGTACAAGAGGCTCAGGATCATGACCAACATCTTCCTGTTCAACCTGGCCCTTGGTGA 8729
|| ||||||||||| ||| | |||||| ||| | ||| | ||||||||| | ||
Sbjct 3746475 GCAGCACAAGAGGCTCCGGAGCGTGACCAGCATTTACCTCCTGAACCTGGCCATCTCGGA 3746416
Query 8730 CCTGCTGCTGATTTTCACCCTCCCCTTTTGGATTCACT 8767
|||||| | | ||||| || ||||| |||||| |||
Sbjct 3746415 CCTGCTCTTCCTCTTCACGCTGCCCTTCTGGATTGACT 3746378
Score = 82.4 bits (90), Expect = 9e-11
Identities = 72/90 (80%), Gaps = 0/90 (0%)
Strand=Plus/Minus
Query 9323 TGGACATGGCCCTCTTGGTGGCTGAGATGATCGCCTGCACCCACTGCTGCGTCAACCCCG 9382
||||| ||||| | |||| | ||| ||||||||| ||| ||||||||||||||||| |
Sbjct 3745819 TGGACCTGGCCATGCAGGTGACGGAGGTGATCGCCTACACGCACTGCTGCGTCAACCCTG 3745760
Query 9383 TCATCTACGCGTTTGTGGGCGAAAAGTTCC 9412
|||||||||| || || || || |||||
Sbjct 3745759 TCATCTACGCCTTCGTCGGGGAGCGGTTCC 3745730
>seq2546
Length=117691
Score = 111 bits (122), Expect = 2e-19
Identities = 167/235 (71%), Gaps = 7/235 (3%)
Strand=Plus/Plus
Query 146914 ATTTTCAGGGGCTCCACGTGGTTGAGGTAGACGTGCGCGTCCCCCAGGGTGTGCACAAAG 146973
|||||||| |||| ||||| || ||||| | || || || |||| || || || |||
Sbjct 106004 ATTTTCAGCAGCTCAACGTGATTCAGGTAAATATGTGCATCTCCCAAAGTATGTACGAAG 106063
Query 146974 TCCCCCGGCTTAAGGCCGGTCACGTGGGCCACCATGTAGGTGAGCAG---CGAGTAGCTG 147030
| | ||||| ||| | || | ||| || ||||||||||||||||| | | |||||
Sbjct 106064 TTAGCTGGCTTCAGGGCCGTGATGTGTGCGACCATGTAGGTGAGCAGGGCCTACGAGCTG 106123
Query 147031 GCTATGTTGAAGGGGACCCCCAGGCCCATGTCCCCCGACCTCTGGTACAGCTGGCACGAG 147090
|| | |||| || || |||||||||||||| | | | || ||| ||| |||| ||
Sbjct 106124 GC---GATGAAAGGCACACCCAGGCCCATGTCTCACCA-CTGTGGCACAATGGGCAGGAC 106179
Query 147091 AGCTCCCCGTCGGCCACGTAAAACTGGCACAGGATGTGGCACGGCGGCAGCGCCA 147145
|||| || | ||||||| ||| ||| ||| ||||| || | ||| ||||
Sbjct 106180 AGCTTGCCATTTACCACGTAGAACCAGCAAAGGGCATGGCAGGGAGCCAGGGCCA 106234
>seq364
Length=1593528
Score = 95.1 bits (104), Expect = 1e-14
Identities = 156/221 (71%), Gaps = 7/221 (3%)
Strand=Plus/Minus
Query 146872 ATCTTGAGCTTGGGGAAGGGTCGGGGGTTCCTGGCC--AGCTGAATTTTCAGGGGCTCCA 146929
|| |||||||| ||||| || | | || || || ||||| |||||||| || || |
Sbjct 169422 ATTTTGAGCTTCGGGAAAGGCCTTG--TTTCTTGCTGAAGCTGCATTTTCAGAGGTTCAA 169365
Query 146930 CGTGGTTGAGGTAGACGTGCGCGTCCCC-CAGGGTGTGCACAAAGTCCCCCGGCTTAAGG 146988
| || || ||||| | | || || | ||| ||| | || |||| || ||||| |||
Sbjct 169364 CATGATTCAGGTAAA--TACGTGTATCTTCAGAGTGCGTACCAAGTTGCCTGGCTTCAGG 169307
Query 146989 CCGGTCACGTGGGCCACCATGTAGGTGAGCAGCGAGTAGCTGGCTATGTTGAAGGGGACC 147048
|| || | || || | || ||||| ||| | | | || ||| | |||||| || ||
Sbjct 169306 CCTGTGATATGTGCAATCACGTAGGCGAGTGGGGTGCGGCAGGCCAAGTTGAAAGGCACA 169247
Query 147049 CCCAGGCCCATGTCCCCCGACCTCTGGTACAGCTGGCACGA 147089
||| ||||||||| || | |||| ||||||||||||| ||
Sbjct 169246 GCCAAGCCCATGTCTCCTGCCCTCCGGTACAGCTGGCAGGA 169206
>seq306
Length=1744638
Score = 82.4 bits (90), Expect = 9e-11
Identities = 108/150 (72%), Gaps = 0/150 (0%)
Strand=Plus/Minus
Query 8611 TACTCTCTGGTGTTTTTGTTTGGGCTAATTGGCAATGCCCTGGTGATCCTAGTCCTCATA 8670
||||| ||||| ||| ||||||| || |||| ||| || ||||| | | ||||| |
Sbjct 892854 TACTCCCTGGTCTTTCTGTTTGGCCTCCTTGGAAATTCCGTGGTGGTTGTGGTCCTGTTT 892795
Query 8671 AAGTACAAGAGGCTCAGGATCATGACCAACATCTTCCTGTTCAACCTGGCCCTTGGTGAC 8730
|||||||||||||||| | |||||| || | | ||| | ||||| ||| | |||
Sbjct 892794 AAGTACAAGAGGCTCAAGTCCATGACGGACGTGTACCTACTGAACCTTGCCATCTCAGAC 892735
Query 8731 CTGCTGCTGATTTTCACCCTCCCCTTTTGG 8760
||||| | | || ||||||| || |||
Sbjct 892734 CTGCTCTTCGTGCTCTCCCTCCCTTTCTGG 892705
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 582893812288800
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