Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ailuropoda_20melanoleuca_20[refseq_20GCF_5F000004335.2_202009-12-15] 81,467 sequences; 2,299,509,015 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq38 178 2e-39 seq497 132 7e-26 seq590 120 4e-22 seq3057 118 1e-21 seq3107 102 1e-16 seq37469 93.3 6e-14 >seq38 Length=3903652 Score = 178 bits (196), Expect = 2e-39 Identities = 389/582 (67%), Gaps = 32/582 (5%) Strand=Plus/Minus Query 39602 TGTTTAAACATTAAGCAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCG 39661 ||||| ||||| | || ||| |||||||| |||| || |||||||| ||||| ||| | Sbjct 2423993 TGTTTGAACATCAGGCGGGCAAAGTCACAGTGTAAACCTTCATCTCTGCTAATAAATACC 2423934 Query 39662 TTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAA 39721 || ||||||||||| |||||||| || |||||||| |||| | ||| || Sbjct 2423933 TTGGAAAATGTGAGGCCAGGCAT----------TTCTTGAGCCAGAATAACGACGCAGAA 2423884 Query 39722 GATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATGCAACAAGTCTCTCTCCGTAACTT 39781 | |||||| |||| |||| || || ||||| || |||| | || || || | Sbjct 2423883 AAACCAGAA---GAGATTTCTTCCACAGCAGCAAAGGCCACAACCCGTTCCCCATAGGTA 2423827 Query 39782 GTATCATTAT---GTATCCACTTCTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATT 39838 || || || | ||||| | | |||||||| || | |||||| |||||||||| Sbjct 2423826 GTCTCTTTGTCCCCAATCCAATGCAAGGCCCAATCTGCCTCCTTCTTCCCACAAGGCATC 2423767 Query 39839 GTTTCTATAGCATTAAAGAGATAATGTTTTTCATCACTATCTTTAACATATGTATCTATT 39898 || || || ||||| |||||| | | |||| | ||||||| || | || | Sbjct 2423766 GTCTCAATGGCATTGAAGAGAAATTCCCTTTCTTTGGAATCTTTA----ATTTGTCAGTG 2423711 Query 39899 AACAGACTATACAT--------TTCTGA-ATGGATGTTTTCAATCGCCATCTGAAATCCG 39949 | ||||| |||| |||||| || ||| |||| | || || || || || Sbjct 2423710 AGGAGACTGCACATCTCATCCATTCTGAGATATATGATTTCCGTGGCAATTTGGAAGCCA 2423651 Query 39950 TAAAAACATCTTGCTTCAGTAATTTGTACCTCTGAACAAAATCTTTCCGCCAAATTTTCA 40009 || ||||| | ||||| || || || || || | ||| | ||| |||| |||||| Sbjct 2423650 TAGAAACAGCGGGCTTCTGTCATCTGAACTACTTGGCTAAACCGCTCCACCAAGTTTTCA 2423591 Query 40010 TTCACTATTCCATCACTAGCGGCAAAAAATGCCAATACATGTTTAATAAAATATTTTTCA 40069 || ||| | |||||||| || ||||| || |||| ||||| |||||||| | Sbjct 2423590 TTTACTCTGCCATCACTTGCTGCAAAGAAAGCCAGAACATGGCATATAAAATA---GCCC 2423534 Query 40070 TCGGGTGTCAATTTATTCCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTC 40129 || || ||| | |||| || || || || | ||| || |||| ||||||| Sbjct 2423533 TCAGGCTTCAGGGATTCCCAGCGCCGAATGTCCTTGGAAAGATCCACCTCTTTAGCTGTC 2423474 Query 40130 CAAAACGACGCCTCTGCCTTTTTGTACATGTTCCATATATCA 40171 | ||| || ||||| || || || | ||| | ||| | |||| Sbjct 2423473 CGAAAGGAGGCCTCAGCTTTCTTATCCATCTGCCAAAGATCA 2423432 >seq497 Length=1337528 Score = 132 bits (146), Expect = 7e-26 Identities = 111/136 (82%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 39639 CCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTT 39698 |||||||||| ||||| | ||| || ||||| ||||| |||||||| || ||||| || | Sbjct 317827 CCTCATCTCTGCTAATAAGTTCATTGGAAAACGTGAGGCCAGGCATCAGGCCACGTTTCT 317768 Query 39699 TGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATG 39758 ||||||| ||||| | |||||||| |||||||||||||| ||||| || || ||||| | Sbjct 317767 TGAGCCAGAATATTGATGCAAAAGAACCAGAAAAGAAGATTCCTTCCACAGCGGCAAAGG 317708 Query 39759 CAACAAGTCTCTCTCC 39774 | |||| || ||||| Sbjct 317707 CCACAACCCTTTCTCC 317692 >seq590 Length=1172511 Score = 120 bits (132), Expect = 4e-22 Identities = 107/134 (80%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 39641 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTTTG 39700 |||||||| || || | ||| || ||||| |||||||||||||| ||||| | || || Sbjct 827236 TCATCTCTGCTGATGAGTTCATTGGAAAACGTGAGTCCAGGCATAAGACCTCTTTTCTTT 827177 Query 39701 AGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATGCA 39760 ||||| ||||| |||||||||||||| || ||||| || |||||||| || ||||| || Sbjct 827176 AGCCAGAATATAGCAGCAAAAGATCCCGAGAAGAAAATCCCTTCTACAGCAGCAAAAGCC 827117 Query 39761 ACAAGTCTCTCTCC 39774 || | ||| || || Sbjct 827116 ACCACTCTTTCCCC 827103 Score = 95.1 bits (104), Expect = 2e-14 Identities = 95/123 (77%), Gaps = 3/123 (2%) Strand=Plus/Minus Query 39987 AAAATCTTTCCGCCAAATTTTCATTCACTATTCCATCACTAGCGGCAAAAAATGCCAATA 40046 |||||||| || |||||||||||||| ||||||||||| || |||||||| || |||| Sbjct 812817 AAAATCTTACC---AAATTTTCATTCACAATTCCATCACTGGCTGCAAAAAAGGCTAATA 812761 Query 40047 CATGTTTAATAAAATATTTTTCATCGGGTGTCAATTTATTCCAGTCATTGATATCTTTTG 40106 || ||||||||||| ||||| | | | | || ||||||| | || ||| |||| Sbjct 812760 TGTGAGAGATAAAATATTTCTCATCTGATTTAAGCTTGTTCCAGTGAGGGAGATCCTTTG 812701 Query 40107 ATA 40109 ||| Sbjct 812700 ATA 812698 >seq3057 Length=47849 Score = 118 bits (130), Expect = 1e-21 Identities = 106/133 (80%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 68719 TGAAATTCCCCAGATAACACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGAT 68778 |||||||| || || || ||||| ||||| || || || || ||||| ||||| | || Sbjct 11465 TGAAATTCTCCTGACAAGACTCTGCGAGTATAGATGTTGCTTGTATAAGGTTCAATGGAC 11406 Query 68779 TCATTATTTCCCAGAATTTGAGCAGTTGATGCAGTTGGCATAGGTGCCACCAATAAACTA 68838 ||||||||||||||||| ||||||||||| ||||| ||||| || || | | |||||| Sbjct 11405 TCATTATTTCCCAGAATCTGAGCAGTTGAAGCAGTAGGCATCGGGGCAATAAGTAAACTG 11346 Query 68839 TTTCTAAGACCAT 68851 ||||| | ||||| Sbjct 11345 TTTCTTATACCAT 11333 Score = 93.3 bits (102), Expect = 6e-14 Identities = 101/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 69595 ACTCGTTTCATAAATAGATCGGGAATCCAAAGAGCTATAAAGAGATCTCTGGTTCTATTT 69654 ||||||||||| || ||||| ||||||||||| || | || || || |||| | | | Sbjct 2648 ACTCGTTTCATGAAGAGATCTGGAATCCAAAGCGCAAAGAAAAGGTCCCTGGCACGCTGT 2589 Query 69655 TCTTCATTTCCTGTAttttttttAAGATCGAGAAACTCCATAATATCAGAATGCCATGGT 69714 ||||| |||||||| || || || | ||| |||||||| | ||| || ||||||| || Sbjct 2588 TCTTCCTTTCCTGTGTTCTTCTTTAAATCAAGAAACTCAAAAATGTCTAAATGCCAAGGC 2529 Query 69715 TCTAGATATATCGC 69728 || || || || || Sbjct 2528 TCCAGGTAAATAGC 2515 >seq3107 Length=44217 Score = 102 bits (112), Expect = 1e-16 Identities = 125/171 (73%), Gaps = 0/171 (0%) Strand=Plus/Minus Query 70331 CATCACTAAATAGtttttttGTTTCCTTGTGTAAATTTGATATGGCTATTCTGGCTGCTA 70390 || |||| || | ||| |||||||| ||||| || || || | || || || ||||| | Sbjct 40440 CACCACTGAACACTTTCTTTGTTTCTTTGTGCAAGTTGGACACTGCAATCCTTGCTGCCA 40381 Query 70391 GAATAGCATAGTCAGGATGTTGTGTAGTACAAGTAGCTGCTATTTCCGCAGCTAACGTAT 70450 | || ||||||||||| || | || || | || || ||| | || ||||| || |||| Sbjct 40380 GGATGGCATAGTCAGGGTGCTCAGTCGTCAAGGTCGCAGCTGTCTCAGCAGCCAAAGTAT 40321 Query 70451 CTAATTCTATAGTTGTAACTCCGTTATATAGCCCTTGAATAACTTTCATGG 70501 ||| ||| | ||| || || || | |||| ||||| || |||||||||| Sbjct 40320 CTAGTTCCACAGTGGTGACCCCACTGTATAAGCCTTGGATTACTTTCATGG 40270 >seq37469 Length=236 Score = 93.3 bits (102), Expect = 6e-14 Identities = 113/154 (73%), Gaps = 0/154 (0%) Strand=Plus/Plus Query 70348 tttGTTTCCTTGTGTAAATTTGATATGGCTATTCTGGCTGCTAGAATAGCATAGTCAGGA 70407 |||||||| ||||| || || || | || || || ||||| || || ||||||||||| Sbjct 1 TTTGTTTCTTTGTGCAAGTTGGACACTGCAATCCTTGCTGCCAGGATGGCATAGTCAGGG 60 Query 70408 TGTTGTGTAGTACAAGTAGCTGCTATTTCCGCAGCTAACGTATCTAATTCTATAGTTGTA 70467 || | || || | || || ||| | || ||||| || ||||||| ||| | ||| || Sbjct 61 TGCTTAGTCGTCAAGGTCGCAGCTGTCTCAGCAGCCAAAGTATCTAGTTCCACAGTGGTG 120 Query 70468 ACTCCGTTATATAGCCCTTGAATAACTTTCATGG 70501 || || | |||| ||||| || |||||||||| Sbjct 121 ACCCCACTGTATAAGCCTTGGATTACTTTCATGG 154 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686209295009880