Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ailuropoda_20melanoleuca_20[refseq_20GCF_5F000004335.2_202009-12-15]
81,467 sequences; 2,299,509,015 total letters
Query= NC_027213.1
Length=214699
Score E
Sequences producing significant alignments: (Bits) Value
seq38 178 2e-39
seq497 132 7e-26
seq590 120 4e-22
seq3057 118 1e-21
seq3107 102 1e-16
seq37469 93.3 6e-14
>seq38
Length=3903652
Score = 178 bits (196), Expect = 2e-39
Identities = 389/582 (67%), Gaps = 32/582 (5%)
Strand=Plus/Minus
Query 39602 TGTTTAAACATTAAGCAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCG 39661
||||| ||||| | || ||| |||||||| |||| || |||||||| ||||| ||| |
Sbjct 2423993 TGTTTGAACATCAGGCGGGCAAAGTCACAGTGTAAACCTTCATCTCTGCTAATAAATACC 2423934
Query 39662 TTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAA 39721
|| ||||||||||| |||||||| || |||||||| |||| | ||| ||
Sbjct 2423933 TTGGAAAATGTGAGGCCAGGCAT----------TTCTTGAGCCAGAATAACGACGCAGAA 2423884
Query 39722 GATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATGCAACAAGTCTCTCTCCGTAACTT 39781
| |||||| |||| |||| || || ||||| || |||| | || || || |
Sbjct 2423883 AAACCAGAA---GAGATTTCTTCCACAGCAGCAAAGGCCACAACCCGTTCCCCATAGGTA 2423827
Query 39782 GTATCATTAT---GTATCCACTTCTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATT 39838
|| || || | ||||| | | |||||||| || | |||||| ||||||||||
Sbjct 2423826 GTCTCTTTGTCCCCAATCCAATGCAAGGCCCAATCTGCCTCCTTCTTCCCACAAGGCATC 2423767
Query 39839 GTTTCTATAGCATTAAAGAGATAATGTTTTTCATCACTATCTTTAACATATGTATCTATT 39898
|| || || ||||| |||||| | | |||| | ||||||| || | || |
Sbjct 2423766 GTCTCAATGGCATTGAAGAGAAATTCCCTTTCTTTGGAATCTTTA----ATTTGTCAGTG 2423711
Query 39899 AACAGACTATACAT--------TTCTGA-ATGGATGTTTTCAATCGCCATCTGAAATCCG 39949
| ||||| |||| |||||| || ||| |||| | || || || || ||
Sbjct 2423710 AGGAGACTGCACATCTCATCCATTCTGAGATATATGATTTCCGTGGCAATTTGGAAGCCA 2423651
Query 39950 TAAAAACATCTTGCTTCAGTAATTTGTACCTCTGAACAAAATCTTTCCGCCAAATTTTCA 40009
|| ||||| | ||||| || || || || || | ||| | ||| |||| ||||||
Sbjct 2423650 TAGAAACAGCGGGCTTCTGTCATCTGAACTACTTGGCTAAACCGCTCCACCAAGTTTTCA 2423591
Query 40010 TTCACTATTCCATCACTAGCGGCAAAAAATGCCAATACATGTTTAATAAAATATTTTTCA 40069
|| ||| | |||||||| || ||||| || |||| ||||| |||||||| |
Sbjct 2423590 TTTACTCTGCCATCACTTGCTGCAAAGAAAGCCAGAACATGGCATATAAAATA---GCCC 2423534
Query 40070 TCGGGTGTCAATTTATTCCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTC 40129
|| || ||| | |||| || || || || | ||| || |||| |||||||
Sbjct 2423533 TCAGGCTTCAGGGATTCCCAGCGCCGAATGTCCTTGGAAAGATCCACCTCTTTAGCTGTC 2423474
Query 40130 CAAAACGACGCCTCTGCCTTTTTGTACATGTTCCATATATCA 40171
| ||| || ||||| || || || | ||| | ||| | ||||
Sbjct 2423473 CGAAAGGAGGCCTCAGCTTTCTTATCCATCTGCCAAAGATCA 2423432
>seq497
Length=1337528
Score = 132 bits (146), Expect = 7e-26
Identities = 111/136 (82%), Gaps = 0/136 (0%)
Strand=Plus/Minus
Query 39639 CCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTT 39698
|||||||||| ||||| | ||| || ||||| ||||| |||||||| || ||||| || |
Sbjct 317827 CCTCATCTCTGCTAATAAGTTCATTGGAAAACGTGAGGCCAGGCATCAGGCCACGTTTCT 317768
Query 39699 TGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATG 39758
||||||| ||||| | |||||||| |||||||||||||| ||||| || || ||||| |
Sbjct 317767 TGAGCCAGAATATTGATGCAAAAGAACCAGAAAAGAAGATTCCTTCCACAGCGGCAAAGG 317708
Query 39759 CAACAAGTCTCTCTCC 39774
| |||| || |||||
Sbjct 317707 CCACAACCCTTTCTCC 317692
>seq590
Length=1172511
Score = 120 bits (132), Expect = 4e-22
Identities = 107/134 (80%), Gaps = 0/134 (0%)
Strand=Plus/Minus
Query 39641 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTTTG 39700
|||||||| || || | ||| || ||||| |||||||||||||| ||||| | || ||
Sbjct 827236 TCATCTCTGCTGATGAGTTCATTGGAAAACGTGAGTCCAGGCATAAGACCTCTTTTCTTT 827177
Query 39701 AGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATGCA 39760
||||| ||||| |||||||||||||| || ||||| || |||||||| || ||||| ||
Sbjct 827176 AGCCAGAATATAGCAGCAAAAGATCCCGAGAAGAAAATCCCTTCTACAGCAGCAAAAGCC 827117
Query 39761 ACAAGTCTCTCTCC 39774
|| | ||| || ||
Sbjct 827116 ACCACTCTTTCCCC 827103
Score = 95.1 bits (104), Expect = 2e-14
Identities = 95/123 (77%), Gaps = 3/123 (2%)
Strand=Plus/Minus
Query 39987 AAAATCTTTCCGCCAAATTTTCATTCACTATTCCATCACTAGCGGCAAAAAATGCCAATA 40046
|||||||| || |||||||||||||| ||||||||||| || |||||||| || ||||
Sbjct 812817 AAAATCTTACC---AAATTTTCATTCACAATTCCATCACTGGCTGCAAAAAAGGCTAATA 812761
Query 40047 CATGTTTAATAAAATATTTTTCATCGGGTGTCAATTTATTCCAGTCATTGATATCTTTTG 40106
|| ||||||||||| ||||| | | | | || ||||||| | || ||| ||||
Sbjct 812760 TGTGAGAGATAAAATATTTCTCATCTGATTTAAGCTTGTTCCAGTGAGGGAGATCCTTTG 812701
Query 40107 ATA 40109
|||
Sbjct 812700 ATA 812698
>seq3057
Length=47849
Score = 118 bits (130), Expect = 1e-21
Identities = 106/133 (80%), Gaps = 0/133 (0%)
Strand=Plus/Minus
Query 68719 TGAAATTCCCCAGATAACACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGAT 68778
|||||||| || || || ||||| ||||| || || || || ||||| ||||| | ||
Sbjct 11465 TGAAATTCTCCTGACAAGACTCTGCGAGTATAGATGTTGCTTGTATAAGGTTCAATGGAC 11406
Query 68779 TCATTATTTCCCAGAATTTGAGCAGTTGATGCAGTTGGCATAGGTGCCACCAATAAACTA 68838
||||||||||||||||| ||||||||||| ||||| ||||| || || | | ||||||
Sbjct 11405 TCATTATTTCCCAGAATCTGAGCAGTTGAAGCAGTAGGCATCGGGGCAATAAGTAAACTG 11346
Query 68839 TTTCTAAGACCAT 68851
||||| | |||||
Sbjct 11345 TTTCTTATACCAT 11333
Score = 93.3 bits (102), Expect = 6e-14
Identities = 101/134 (75%), Gaps = 0/134 (0%)
Strand=Plus/Minus
Query 69595 ACTCGTTTCATAAATAGATCGGGAATCCAAAGAGCTATAAAGAGATCTCTGGTTCTATTT 69654
||||||||||| || ||||| ||||||||||| || | || || || |||| | | |
Sbjct 2648 ACTCGTTTCATGAAGAGATCTGGAATCCAAAGCGCAAAGAAAAGGTCCCTGGCACGCTGT 2589
Query 69655 TCTTCATTTCCTGTAttttttttAAGATCGAGAAACTCCATAATATCAGAATGCCATGGT 69714
||||| |||||||| || || || | ||| |||||||| | ||| || ||||||| ||
Sbjct 2588 TCTTCCTTTCCTGTGTTCTTCTTTAAATCAAGAAACTCAAAAATGTCTAAATGCCAAGGC 2529
Query 69715 TCTAGATATATCGC 69728
|| || || || ||
Sbjct 2528 TCCAGGTAAATAGC 2515
>seq3107
Length=44217
Score = 102 bits (112), Expect = 1e-16
Identities = 125/171 (73%), Gaps = 0/171 (0%)
Strand=Plus/Minus
Query 70331 CATCACTAAATAGtttttttGTTTCCTTGTGTAAATTTGATATGGCTATTCTGGCTGCTA 70390
|| |||| || | ||| |||||||| ||||| || || || | || || || ||||| |
Sbjct 40440 CACCACTGAACACTTTCTTTGTTTCTTTGTGCAAGTTGGACACTGCAATCCTTGCTGCCA 40381
Query 70391 GAATAGCATAGTCAGGATGTTGTGTAGTACAAGTAGCTGCTATTTCCGCAGCTAACGTAT 70450
| || ||||||||||| || | || || | || || ||| | || ||||| || ||||
Sbjct 40380 GGATGGCATAGTCAGGGTGCTCAGTCGTCAAGGTCGCAGCTGTCTCAGCAGCCAAAGTAT 40321
Query 70451 CTAATTCTATAGTTGTAACTCCGTTATATAGCCCTTGAATAACTTTCATGG 70501
||| ||| | ||| || || || | |||| ||||| || ||||||||||
Sbjct 40320 CTAGTTCCACAGTGGTGACCCCACTGTATAAGCCTTGGATTACTTTCATGG 40270
>seq37469
Length=236
Score = 93.3 bits (102), Expect = 6e-14
Identities = 113/154 (73%), Gaps = 0/154 (0%)
Strand=Plus/Plus
Query 70348 tttGTTTCCTTGTGTAAATTTGATATGGCTATTCTGGCTGCTAGAATAGCATAGTCAGGA 70407
|||||||| ||||| || || || | || || || ||||| || || |||||||||||
Sbjct 1 TTTGTTTCTTTGTGCAAGTTGGACACTGCAATCCTTGCTGCCAGGATGGCATAGTCAGGG 60
Query 70408 TGTTGTGTAGTACAAGTAGCTGCTATTTCCGCAGCTAACGTATCTAATTCTATAGTTGTA 70467
|| | || || | || || ||| | || ||||| || ||||||| ||| | ||| ||
Sbjct 61 TGCTTAGTCGTCAAGGTCGCAGCTGTCTCAGCAGCCAAAGTATCTAGTTCCACAGTGGTG 120
Query 70468 ACTCCGTTATATAGCCCTTGAATAACTTTCATGG 70501
|| || | |||| ||||| || ||||||||||
Sbjct 121 ACCCCACTGTATAAGCCTTGGATTACTTTCATGG 154
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 686209295009880
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |