Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ailuropoda_20melanoleuca_20[refseq_20GCF_5F000004335.2_202009-12-15] 81,467 sequences; 2,299,509,015 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq497 111 1e-19 seq590 95.1 1e-14 seq1589 86.0 5e-12 >seq497 Length=1337528 Score = 111 bits (122), Expect = 1e-19 Identities = 97/118 (82%), Gaps = 2/118 (2%) Strand=Plus/Plus Query 43904 CGGTTTGCGCAAGAAGTTCA-ATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGC 43962 |||||| ||||||||||| |||| ||||||| || ||||| ||||| || |||||||| Sbjct 315690 CGGTTTAGCCAAGAAGTTCAGATTA-CAGAAGCCCGGTGTTTCTATGGCTTCCAAATTGC 315748 Query 43963 CATAGAAAATATTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGAT 44020 ||| ||||| || ||||| || ||||||||||| || || || || ||||| |||||| Sbjct 315749 CATGGAAAACATCCATTCTGAGATGTACAGTCTCCTCATTGACACATACATTAAAGAT 315806 >seq590 Length=1172511 Score = 95.1 bits (104), Expect = 1e-14 Identities = 78/95 (82%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 44493 AAAACCCGTTTGATTTTATGGAAAATATTTCGTTGGAAGGCAAAACAAACTTTTTTGAAA 44552 |||| || ||||||||||||||||| |||||||| ||||| |||||||| || ||||| | Sbjct 851748 AAAATCCCTTTGATTTTATGGAAAACATTTCGTTAGAAGGGAAAACAAATTTCTTTGAGA 851807 Query 44553 AACGCGTTGGAGAATATCAGCGAATGGGCGTCATG 44587 |||| |||| ||| ||||| || | | |||||| Sbjct 851808 AACGAGTTGCAGAGTATCAACGTTTTGCAGTCATG 851842 Score = 82.4 bits (90), Expect = 6e-11 Identities = 68/83 (82%), Gaps = 0/83 (0%) Strand=Plus/Plus Query 43700 TTTGTCGTGTTTCCAATTCAATATCATGACATATGGCAAATGTACAAAAAAGCACAGGCG 43759 |||||| | |||||||| ||||| | ||| || ||| ||||||| ||| | |||||||| Sbjct 808993 TTTGTCATCTTTCCAATCCAATACCCTGATATTTGGAAAATGTATAAACAGGCACAGGCA 809052 Query 43760 TCATTTTGGACAGCAGAAGAAGT 43782 || || |||||||||||||| || Sbjct 809053 TCCTTCTGGACAGCAGAAGAGGT 809075 >seq1589 Length=427763 Score = 86.0 bits (94), Expect = 5e-12 Identities = 111/154 (72%), Gaps = 6/154 (4%) Strand=Plus/Plus Query 19548 TTTGCACATTATAATACTAGATGAATTGGACGCAATCTGTAAGCAAAGAGGTT------C 19601 ||||||||| || || | |||||| | || || ||||| ||||| ||||| | Sbjct 225199 TTTGCACATAATCATCTTTGATGAAATTGATGCCATCTGCAAGCAGAGAGGGAGCATGGC 225258 Query 19602 TGGTGTAAATGGAGTACATGACACTGTTGTCAATCAACTCCTGTCAAAATTAGACGGTGT 19661 |||| | ||||| ||||||||||||||||| || | ||||| ||| | || || || Sbjct 225259 TGGTAGTACGGGAGTTCATGACACTGTTGTCAACCAGTTGCTGTCCAAAATTGATGGGGT 225318 Query 19662 TAACCAACTGAATAATATTTTAGTTATTGGCATG 19695 | |||||||| || || ||||| || || ||| Sbjct 225319 AGAGCAACTGAACAACATCTTAGTCATCGGTATG 225352 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397061374259335