Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ailuropoda_20melanoleuca_20[refseq_20GCF_5F000004335.2_202009-12-15]
81,467 sequences; 2,299,509,015 total letters
Query= NC_027778.1
Length=124244
Score E
Sequences producing significant alignments: (Bits) Value
seq497 111 1e-19
seq590 95.1 1e-14
seq1589 86.0 5e-12
>seq497
Length=1337528
Score = 111 bits (122), Expect = 1e-19
Identities = 97/118 (82%), Gaps = 2/118 (2%)
Strand=Plus/Plus
Query 43904 CGGTTTGCGCAAGAAGTTCA-ATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGC 43962
|||||| ||||||||||| |||| ||||||| || ||||| ||||| || ||||||||
Sbjct 315690 CGGTTTAGCCAAGAAGTTCAGATTA-CAGAAGCCCGGTGTTTCTATGGCTTCCAAATTGC 315748
Query 43963 CATAGAAAATATTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGAT 44020
||| ||||| || ||||| || ||||||||||| || || || || ||||| ||||||
Sbjct 315749 CATGGAAAACATCCATTCTGAGATGTACAGTCTCCTCATTGACACATACATTAAAGAT 315806
>seq590
Length=1172511
Score = 95.1 bits (104), Expect = 1e-14
Identities = 78/95 (82%), Gaps = 0/95 (0%)
Strand=Plus/Plus
Query 44493 AAAACCCGTTTGATTTTATGGAAAATATTTCGTTGGAAGGCAAAACAAACTTTTTTGAAA 44552
|||| || ||||||||||||||||| |||||||| ||||| |||||||| || ||||| |
Sbjct 851748 AAAATCCCTTTGATTTTATGGAAAACATTTCGTTAGAAGGGAAAACAAATTTCTTTGAGA 851807
Query 44553 AACGCGTTGGAGAATATCAGCGAATGGGCGTCATG 44587
|||| |||| ||| ||||| || | | ||||||
Sbjct 851808 AACGAGTTGCAGAGTATCAACGTTTTGCAGTCATG 851842
Score = 82.4 bits (90), Expect = 6e-11
Identities = 68/83 (82%), Gaps = 0/83 (0%)
Strand=Plus/Plus
Query 43700 TTTGTCGTGTTTCCAATTCAATATCATGACATATGGCAAATGTACAAAAAAGCACAGGCG 43759
|||||| | |||||||| ||||| | ||| || ||| ||||||| ||| | ||||||||
Sbjct 808993 TTTGTCATCTTTCCAATCCAATACCCTGATATTTGGAAAATGTATAAACAGGCACAGGCA 809052
Query 43760 TCATTTTGGACAGCAGAAGAAGT 43782
|| || |||||||||||||| ||
Sbjct 809053 TCCTTCTGGACAGCAGAAGAGGT 809075
>seq1589
Length=427763
Score = 86.0 bits (94), Expect = 5e-12
Identities = 111/154 (72%), Gaps = 6/154 (4%)
Strand=Plus/Plus
Query 19548 TTTGCACATTATAATACTAGATGAATTGGACGCAATCTGTAAGCAAAGAGGTT------C 19601
||||||||| || || | |||||| | || || ||||| ||||| ||||| |
Sbjct 225199 TTTGCACATAATCATCTTTGATGAAATTGATGCCATCTGCAAGCAGAGAGGGAGCATGGC 225258
Query 19602 TGGTGTAAATGGAGTACATGACACTGTTGTCAATCAACTCCTGTCAAAATTAGACGGTGT 19661
|||| | ||||| ||||||||||||||||| || | ||||| ||| | || || ||
Sbjct 225259 TGGTAGTACGGGAGTTCATGACACTGTTGTCAACCAGTTGCTGTCCAAAATTGATGGGGT 225318
Query 19662 TAACCAACTGAATAATATTTTAGTTATTGGCATG 19695
| |||||||| || || ||||| || || |||
Sbjct 225319 AGAGCAACTGAACAACATCTTAGTCATCGGTATG 225352
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 397061374259335
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |