Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ailuropoda_20melanoleuca_20[refseq_20GCF_5F000004335.2_202009-12-15] 81,467 sequences; 2,299,509,015 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq3007 268 3e-66 seq41 224 3e-53 seq739 114 4e-20 seq182 114 4e-20 seq8 114 4e-20 seq16 104 7e-17 seq375 98.7 3e-15 seq138 96.9 1e-14 seq342 95.1 4e-14 seq219 95.1 4e-14 seq39 95.1 4e-14 seq69 93.3 1e-13 seq1861 91.5 4e-13 seq861 86.0 2e-11 >seq3007 Length=51886 Score = 268 bits (296), Expect = 3e-66 Identities = 907/1403 (65%), Gaps = 15/1403 (1%) Strand=Plus/Minus Query 349259 GTAGAAATAATTGCAAATGATCAAGGTAACAGAACAACGCCATCATACGTTGCATTTACC 349318 || || || || || || || || || ||| | || || || || || || || ||| Sbjct 39830 GTGGAGATCATCGCCAACGACCAGGGCAACCGCACCACCCCCAGCTATGTGGCCTTCACC 39771 Query 349319 GAAACTGAGCGTATGATTGGTGATTCTGCAAAAAATCAAGCTGCTGCTAATCCAAAAAAT 349378 || |||||||| | || || ||| | || || || || | || ||||| | || Sbjct 39770 GACACTGAGCGGCTCATCGGGGATGCCGCCAAGAACCAGGTGGCCATGAATCCCCAGAAC 39711 Query 349379 ACGGTTTTTGATGCTAAGCGACTTATTGGTAGAAGTTTTTCTGACAAATCTACA-CAATC 349437 || || |||||||| || || || ||||| || | ||| ||| | || ||||| Sbjct 39710 ACTGTCTTTGATGCCAAACGTCTGATTGGCAGGAAGTTTAATGATCC-TGTAGTGCAATC 39652 Query 349438 TGATCTAAAACATTTTCCTTTTACTGTTGTTCCAAAAGACGGTGATAAACCAATTATTGA 349497 ||| | |||| || |||||| ||| | || || || | ||||| | | Sbjct 39651 AGATATGAAACTTTGGCCTTTTCAAGTTATC---AATGAAGGAGGCAAACCCAAGGTAAT 39595 Query 349498 GGTTGAATATAAAGGTGAACAAAAACAATTTTTACCCGAAGAAATTTCATCAATGGTTTT 349557 ||| ||| ||||| || ||||| || | || || ||||| || || ||||| | Sbjct 39594 GGTGTCATACAAAGGGGAGAAAAAAGCTTTCTATCCTGAGGAAATCTCTTCTATGGTACT 39535 Query 349558 AGTTAAAATGAAGGAAATTGCTGAAGCATATTTAGGTGAAACAGTAACTGATGCTGTTAT 349617 || |||||||| | |||||| || | ||| || | | || || |||| || || Sbjct 39534 GACAAAGATGAAGGAGACTGCTGAGGCTTTTTTGGGCCACCCTGTTACCAATGCAGTGAT 39475 Query 349618 TACTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCTGGCAGCAT 349677 ||||||||||||||||| |||||| | || || || || || ||||| || || Sbjct 39474 CACTGTACCAGCCTATTTCAATGATTCTCAACGCCAGGCCACCAAGGATGCAGGTGTGAT 39415 Query 349678 TGCGGGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATTGCATATGG 349737 |||||| | ||||| |||||||| || ||||||||||| ||||| || ||||||||||| Sbjct 39414 TGCGGGTCTCAATGTGCTAAGAATTATCAATGAACCCACAGCTGCTGCCATTGCATATGG 39355 Query 349738 GCTTGATAAAATGAGTGACCAAGaaaaaaaTATTCTTATTTTTGATTTAGGTGGTGGTAC 349797 | |||||| || | ||| | | | | || |||||| ||||||| || || Sbjct 39354 CTTAGATAAAGCAGGTCAGGGAGAGCGACACGTCTTGATCTTTGATCTAGGTGGAGGCAC 39295 Query 349798 TTTTGATGTATCACTACTAACACTTGAAGAGGGAATTTTTGAAGTTAAAGCAACTGCTGG 349857 |||||||| || | || || | || || ||||||||||| || || || || || || Sbjct 39294 ATTTGATGTGTCCATCCTGACCATAGATGATGGAATTTTTGAGGTAAAGGCCACAGCCGG 39235 Query 349858 TGATACACATCTTGGTGGAGAAGATTTTGATAATCGTCTCGTTTCGCATTTTGTTAAAGA 349917 || || || || || || ||||| |||||||| | || || || || || | || Sbjct 39234 GGACACCCACCTGGGAGGGGAAGACTTTGATAACAGGCTGGTGAGCCACTTCGTGGAGGA 39175 Query 349918 ATTTAAGCGTCAAGC-TAAAATTGATATTGGAGATAATCCTAGAGCAATGCGTCGCCTAA 349976 || ||| | |||| || | || || | | || |||| || | || || Sbjct 39174 GTTCAAGAG-GAAGCACAAGAAGGACATCAGCCAGAACAAGCGAGCTGTGAGGCGGCTGC 39116 Query 349977 GAACTGCGTGTGAACGTGCTAAGCGTTCCTTATCATCTACTACCCAAACCTCTATTGAAA 350036 | || || || || | || ||| | || | || || | ||||| || | |||| Sbjct 39115 GCACCGCATGCGAGAGGGCCAAGAGGACCCTGTCGTCCAGCACCCAGGCCAACTTGGAAA 39056 Query 350037 TTGATTCTCTTGCTGATGGCAAAGATTTCTTTTCATCTATTACACGTGCTCGGTTTGAAG 350096 ||||||| ||| ||| |||| || |||| |||| || || | || |||||||||| Sbjct 39055 TTGATTCACTTTATGAAGGCATTGACTTCTACACATCCATCACCAGAGCCCGGTTTGAAG 38996 Query 350097 AATTATGTATGGATCTTTTTAGAGCAACAATGGATCCTGTGGAAAAAGTATTAAAAGATG 350156 | || ||| || || ||||||| || |||| |||||||| || | | |||| Sbjct 38995 AGTTGTGTGCAGACCTGTTTAGAGGCACTCTGGAACCTGTGGAGAAGGCTCTTCGGGATG 38936 Query 350157 CAAAAATGTCCAAAAATCAGATTGATGAAGTAGTTTTAGTTGGTGGTTCTACACGTATTC 350216 | || ||| || | |||| |||| | || ||||| || || || || ||||| | Sbjct 38935 CCAAGATGGATAAGGCTAAGATCCATGACATTGTGTTAGTGGGGGGCTCCACTCGTATCC 38876 Query 350217 CAAAAGTTCAACAGTTACTATCTGAGTTTTTTAATGGCAAAGAAC-CTTCTAGATCAATT 350275 | || ||||| | | || || | |||||||| || | | | ||| | || Sbjct 38875 CTAAGGTTCAGAGGCTGCTGCAGGACTACTTTAATGGTCGTGATCTCAACAAGAGC-ATC 38817 Query 350276 AATCCAGATGAAGCTGTTGCATATGGTGCTGCTGTTCAGGCATCTATTTTATCTGGAAAT 350335 || || ||||| || || || || || || || || |||||| | || || || | Sbjct 38816 AACCCTGATGAGGCGGTAGCCTACGGGGCGGCAGTGCAGGCAGCCATCTTGATGGGGGAC 38757 Query 350336 AAGAGTTCTAAAA---TTGATGATCTATTACTACTAGATGTAACTCCACTTTCGCTTGGA 350392 ||| ||| ||| | | ||||| | | | ||||| |||| | || || || Sbjct 38756 AAG---TCTGAAAAGGTACAGGATCTGCTTTTGTTGGATGTGGCTCCCTTGTCCCTAGGG 38700 Query 350393 TTAGAAACTTCTGGTGAAGTAATGACTGTTCTTATTCCTAGAAATAGTACTGTACCTACA 350452 || ||||| |||| | || ||||| || || || | || || | || || Sbjct 38699 TTGGAAACGGCTGGAGGTGTCATGACAGTCCTGATCAAGCGCAACTCCACCATCCCCACC 38640 Query 350453 AAAAAGTCCCAAACTTTTTCTACATTTGCAGATAATCAGCCAGCGGTAACAATTCAAGTA 350512 || || | || | || | || | | ||||||| ||||| | |||| || || || Sbjct 38639 AAGCAGACGCAGATCTTCACCACCTATTCAGATAACCAGCCTGGGGTATTGATCCAGGTG 38580 Query 350513 TTTGAAGGTGAACGTGCTCGCACTAAAGATAATAATAAACTTGGAGAATTTACCCTAAGT 350572 | ||| || || | || || |||||| || || || ||| ||| | | Sbjct 38579 TATGAGGGCGAGAGAGCCATGACCCGAGATAACAACCTCCTGGGGCGGTTTGACCTGACT 38520 Query 350573 GAAATTCCACCAATGCCTAGAGGAGTTCCTCAGATTGAAGTCTCTTTCGATATTGATTCA 350632 | ||| || || || || ||||| ||||||||||| || | || || |||||| | Sbjct 38519 GGAATCCCTCCTGCACCCAGGGGAGTGCCTCAGATTGAGGTGACCTTTGACATTGATGCC 38460 Query 350633 AATGGTATTTTAAATGTTACCGC 350655 ||||||||| | ||||| || || Sbjct 38459 AATGGTATTCTCAATGTAACAGC 38437 >seq41 Length=3861741 Score = 224 bits (248), Expect = 3e-53 Identities = 379/546 (69%), Gaps = 2/546 (0%) Strand=Plus/Minus Query 349760 GaaaaaaaTATTCTTATTTTTGATTTAGGTGGTGGTACTTTTGATGTATCACTACTAACA 349819 |||| ||| | || || ||||| ||||| ||||| ||||||||||| || | || || Sbjct 3281454 GAAAGGAATGTGCTGATCTTTGACTTAGGAGGTGGCACTTTTGATGTGTCTATCCTTACT 3281395 Query 349820 CTTGAAGAGGGAATTTTTGAAGTTAAAGCAACTGCTGGTGATACACATCTTGGTGGAGAA 349879 ||||||| ||||| || || || ||| | || ||||| || || ||| | ||||||||| Sbjct 3281394 ATTGAAGATGGAATCTTCGAGGTCAAATCCACAGCTGGAGACACTCATTTAGGTGGAGAA 3281335 Query 349880 GATTTTGATAATCGTCTCGTTTCGCATTTTGTTAAAGAATTTAAGCGTCAAGCTAAAATT 349939 || |||||||| || | || |||||| || ||| || || || || ||| | Sbjct 3281334 GACTTTGATAACCGAATGGTCAACCATTTTATTGCAGAGTTCAAACGCAAACATAAGAAG 3281275 Query 349940 GATATTGGAGATAATCCTAGAGCAATGCGTCGCCTAAGAACTGCGTGTGAACGTGCTAAG 349999 || || | || || || ||| | ||||| || | ||||| ||||||||||||||| Sbjct 3281274 GACATCAGTGAAAACAAGAGGGCAGTTCGTCGTCTCCGTACTGCTTGTGAACGTGCTAAG 3281215 Query 350000 CGTTCCTTATCATCTACTACCCAAACCTCTATTGAAATTGATTCTCTTGCTGATGGCAAA 350059 ||| | | || || | ||||| || |||||| ||||||||||| ||| || | Sbjct 3281214 CGTACACTTTCTTCCAGCACCCAGGCCAGTATTGAGATTGATTCTCTGTATGAAGGAATC 3281155 Query 350060 GATTTCTTTTCATCTATTACACGTGCTCGGTTTGAAGAATTATGTATGGATCTTTTTAGA 350119 || |||| | | |||||||| ||||| || |||||||||||| | || || || | Sbjct 3281154 GACTTCTATACCTCTATTACTCGTGCCCGCTTTGAAGAATTAAATGCTGACCTGTTCCGT 3281095 Query 350120 GCAACAATGGATCCTGTGGAAAAAGTATTAAAAGATGCAAAAATGTCCAAAAATCAGATT 350179 | || |||| ||||| || |||| | ||||| || | ||| |||||| Sbjct 3281094 GGCACCCTGGACCCTGTAGAGAAAGCCCTTCGGGATGCCAAGCTAGACAAGTCTCAGATC 3281035 Query 350180 GATGAAGTAGTTTTAGTTGGTGGTTCTACACGTATTCCAAAAGTTCAACAGTTACTATCT 350239 | || | || | || ||||||||||| ||||| || || |||| | | ||| Sbjct 3281034 CACGATATTGTCCTGGTGGGTGGTTCTACCCGTATCCCCAAGATTCAGAAACTTCTACAA 3280975 Query 350240 GAGTTTTTTAATGGCAAAGAACCTTCT-AGATCAATTAATCCAGATGAAGCTGTTGCATA 350298 || ||||| || || ||||||| | ||| | || || || ||||| |||||||| || Sbjct 3280974 GATTTTTTCAACGGAAAAGAACTGAATAAGAGC-ATCAACCCTGATGAGGCTGTTGCTTA 3280916 Query 350299 TGGTGC 350304 |||||| Sbjct 3280915 TGGTGC 3280910 Score = 158 bits (174), Expect = 4e-33 Identities = 358/533 (67%), Gaps = 8/533 (2%) Strand=Plus/Plus Query 183262 CTGCACCATATGCAACAGCTTCATCTGGGTTAATTGAACGAGATAATTCTTTGCCATTAA 183321 |||||||||| |||||||| ||||| ||||| || | | |||||| || || | Sbjct 3280908 CTGCACCATAAGCAACAGCCTCATCAGGGTTGATGCTCTTATTCAGTTCTTTTCCGTTGA 3280967 Query 183322 AAAATTCTGAAAGCATTTGTTGAATTTTTGGAATTCTAGTTGAACCACCGACTAATACTA 183381 |||| ||| || | || ||||| || || || | || |||||||| || | || | Sbjct 3280968 AAAAATCTTGTAGAAGTTTCTGAATCTTGGGGATACGGGTAGAACCACCCACCAGGACAA 3281027 Query 183382 CTTCATCGATATTA--CTTTTACTAATTTGTGAATCTTTTAAAACTTTTTCAACAGGGTC 183439 || | ||| | | ||| | ||| ||| | ||| | |||| || |||||||| Sbjct 3281028 TATCGTGGATCTGAGACTTGT-CTAGCTTG-GCATCCCGAAGGGCTTTCTCTACAGGGTC 3281085 Query 183440 CATAGTTTTTCTAAATAAATCTATACATAACTCTTCTAATCTTGCTCTAGTTAAAGATGa 183499 || || | || | || | ||| ||||| || | || | ||| | ||| | Sbjct 3281086 CAGGGTGCCACGGAACAGGTCAGCATTTAATTCTTCAAAGCGGGCACGAGTAATAGAGGT 3281145 Query 183500 aaaaaaGTCAATACCATTATATAAGGAATCAATTTCAATCGATGTTTGTGTAGATGATGA 183559 | | ||||| || || | ||| | |||||||| ||||| | || || || || Sbjct 3281146 ATAGAAGTCGATTCCTTCATACAGAGAATCAATCTCAATACTGGCCTGGGTGCTGGAAGA 3281205 Query 183560 TAATGTTCTTTTAGCTCGTTCACATGCTGTTCTTAGTCGACGTAATGA--TCTTGGATTA 183617 | ||| | ||||| |||||||| || || | || ||||| | || ||||| || Sbjct 3281206 AAGTGTACGCTTAGCACGTTCACAAGCAGTACGGAGACGACGAACTGCCCTCTTGTTTTC 3281265 Query 183618 TCTGTAATATCTTGTTTATGTTTTCTTTTAAATTCAGTAATAAAATGTTGAAGTAATCTT 183677 ||| || || | |||||||| | ||| || || | ||||||||| | | | || Sbjct 3281266 ACTG--ATGTCCTTCTTATGTTTGCGTTTGAACTCTGCAATAAAATGGTTGACCATTCGG 3281323 Query 183678 GTATCAAAATCTTCACCACCTAAATGTGTATCGCCAGCAGTAGCTTTAACTTCAAATATT 183737 ||||||| ||||| ||||||||||| || || ||||| || | ||| || || || ||| Sbjct 3281324 TTATCAAAGTCTTCTCCACCTAAATGAGTGTCTCCAGCTGTGGATTTGACCTCGAAGATT 3281383 Query 183738 CCGTCTTCAATATTTAAAATTGATACATCAAATGTACCACCACCCAAATCAAA 183790 || ||||||||| | | || || |||||||| || ||||| || || ||||| Sbjct 3281384 CCATCTTCAATAGTAAGGATAGACACATCAAAAGTGCCACCTCCTAAGTCAAA 3281436 Score = 96.9 bits (106), Expect = 1e-14 Identities = 106/141 (75%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 349608 ATGCTGTTATTACTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATG 349667 |||| ||| | || ||||| ||||| || ||||| | |||||| || || ||||||| Sbjct 3281712 ATGCAGTTGTCACAGTACCTGCCTACTTCAATGACTCTCAGCGTCAGGCTACCAAAGATG 3281653 Query 349668 CTGGCAGCATTGCGGGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAA 349727 |||| | ||||| || | ||||| || ||||| || ||||| || |||||||| || | Sbjct 3281652 CTGGAACTATTGCTGGTCTCAATGTACTTAGAATCATCAATGAGCCAACTGCTGCTGCTA 3281593 Query 349728 TTGCATATGGGCTTGATAAAA 349748 |||| ||||| | || |||| Sbjct 3281592 TTGCTTATGGCTTAGACAAAA 3281572 Score = 84.2 bits (92), Expect = 7e-11 Identities = 134/191 (70%), Gaps = 6/191 (3%) Strand=Plus/Minus Query 350306 GCTGTTCAGGCATCTATTTTATCTGGAAATAAGAGTTCTAAAATTGAT---GATCTATTA 350362 ||||| |||||| | || | |||||| | || ||| ||| || | ||||| | Sbjct 3280694 GCTGTCCAGGCAGCCATCCTTTCTGGAGACAAA---TCTGAAAATGTTCAAGATCTGCTG 3280638 Query 350363 CTACTAGATGTAACTCCACTTTCGCTTGGATTAGAAACTTCTGGTGAAGTAATGACTGTT 350422 || | ||||| ||||||||||| ||||| | |||||| |||| | ||| ||||||||| Sbjct 3280637 CTGTTGGATGTCACTCCACTTTCTCTTGGCATTGAAACTGCTGGAGGAGTCATGACTGTT 3280578 Query 350423 CTTATTCCTAGAAATAGTACTGTACCTACAAAAAAGTCCCAAACTTTTTCTACATTTGCA 350482 || || | |||| ||| | ||||| ||| || | ||||| ||| |||| | | Sbjct 3280577 CTCATCAAGCGTAATACTACCATTCCTACCAAACAGACACAAACCTTTACTACCTACTCC 3280518 Query 350483 GATAATCAGCC 350493 || || ||||| Sbjct 3280517 GACAACCAGCC 3280507 Score = 84.2 bits (92), Expect = 7e-11 Identities = 129/184 (70%), Gaps = 0/184 (0%) Strand=Plus/Minus Query 349205 GGAATCGATTTAGGTACTACTTATTCTTGTGTTGCTGTTTGGCAAAATGATCGTGTAGAA 349264 || || ||| | || || || || |||||||| | ||| | || | | || ||| Sbjct 3282658 GGCATTGATCTTGGCACCACCTACTCTTGTGTGGGTGTCTTCCAGCACGGGAAAGTGGAA 3282599 Query 349265 ATAATTGCAAATGATCAAGGTAACAGAACAACGCCATCATACGTTGCATTTACCGAAACT 349324 |||||||| |||||||| || ||| |||| || ||| || || || || || || ||| Sbjct 3282598 ATAATTGCCAATGATCAGGGAAACCGAACCACCCCAAGTTATGTCGCTTTCACTGACACT 3282539 Query 349325 GAGCGTATGATTGGTGATTCTGCAAAAAATCAAGCTGCTGCTAATCCAAAAAATACGGTT 349384 || || |||| |||||| | ||||| ||||||| ||| || || | || || ||| Sbjct 3282538 GAACGATTGATCGGTGATGCCGCAAAGAATCAAGTTGCGATGAACCCCACCAACACAGTT 3282479 Query 349385 TTTG 349388 |||| Sbjct 3282478 TTTG 3282475 >seq739 Length=1006505 Score = 114 bits (126), Expect = 4e-20 Identities = 164/230 (71%), Gaps = 17/230 (7%) Strand=Plus/Minus Query 140512 CACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAAT---AT-TATAATCA 140567 ||||||| | ||| | | |||||||||||| ||| | |||||||| || |||| ||| Sbjct 545028 CACCACGAAGTCTCAACAGAAGATGAAGAGTGGACCCCTTTTGAATGCTATATATAGTCA 544969 Query 140568 GATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGA 140627 || || || | |||| | ||||||||||| || | ||||| |||| | Sbjct 544968 GACAAAGTACA------------TTGTGTGCCAGCAAAGATCAGTCCCTGCTGCTCAGAA 544921 Query 140628 GGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCA 140687 ||||||||||| || | || ||| || || |||| ||| || || | ||| || |||| | Sbjct 544920 GGAATTCCTTCCTTCTGCTCAATCTTGGCCTTTAGATTTTCTATTGTATCTGAGGGTTTA 544861 Query 140688 ACTTCAAGTGTAACTGTCTTTCC-GGTTAGTGTTTTTACAAAAATCTGCA 140736 || |||| | || || || || || || ||||| ||||||||||||| Sbjct 544860 ACCTCAATCCTGACGGTTTTCCCTCGTGAGGGTTTTCACAAAAATCTGCA 544811 >seq182 Length=2248111 Score = 114 bits (126), Expect = 4e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 140510 ACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGA 140569 |||||||| | ||| | |||||||||||||| | || || ||| || ||| | Sbjct 678789 ACCACCACAAAGTCTCAACACAAGATGAAGAGTGGCGTCCTTGTGAGCGCCGTAGTCACA 678730 Query 140570 TAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGG 140629 || | ||| ||||| || ||||| | ||||| ||||| || |||||||||||||| Sbjct 678729 CAAAGCTCGTCCATCGTCCAGTTGCTCGCCAGCGAAGATCAGTGTCTGCTGATCAGGAGG 678670 Query 140630 AATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAAC 140689 ||||||||| |||||||| || | || ||||| | || | | ||| || | |||||| Sbjct 678669 AATTCCTTCCTTATCCTGGATCTCGGCCTTTACGCTTTCTACAGTATCTGAGGATTCAAC 678610 Query 140690 TTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 ||| | || | ||||| || | || | | |||| ||||||||| Sbjct 678609 TTCGACAGTGATGGTCTTCCCCATCAGCACTGTCACAAGAATCTGCAT 678562 >seq8 Length=5331620 Score = 114 bits (126), Expect = 4e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 140510 ACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGA 140569 ||||||| | | ||| | ||| |||||||| | ||| ||||||| | || ||||| Sbjct 5215806 ACCACCATGAAGTCTCAACACAGTTTGAAGAGTGGGCTCCTTTTGAACGTGGTAGTCAGA 5215747 Query 140570 TAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGG 140629 || || | ||||||| ||||| || | || ||||| || | |||||||| ||| | Sbjct 5215746 CAAAGTACATCCATCTTGCAGTTGCTTGCTGGCCAAGATCAGTCTCTGCTGATCGGGAAG 5215687 Query 140630 AATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAAC 140689 ||||||||| ||||||| ||| || || |||||||| || | ||| | | |||||| Sbjct 5215686 AATTCCTTCCTTATCCTAAATCTTGGCCTTTACATTTCTTATTGTATCCAAGGTTTCAAC 5215627 Query 140690 TTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 | || | | |||| || | || ||||| || ||||||||||| Sbjct 5215626 CACGAGAGGGATAATCTTCCCTATAAGGGTTTTCACGAAAATCTGCAT 5215579 >seq16 Length=4665003 Score = 104 bits (114), Expect = 7e-17 Identities = 151/211 (72%), Gaps = 8/211 (4%) Strand=Plus/Plus Query 140528 AACA-AGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGATAATGTTCGCCCATCTT 140586 |||| ||||||||||| ||||| ||||||| | | | ||||| || || | | |||||| Sbjct 4495731 AACACAGATGAAGAGTGGACTCCTTTTGAACACTGCAGTCAGACAAAGTACACTCATCTT 4495790 Query 140587 CAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCT 140646 |||| || ||||| || || | ||||||||| |||||||| |||| ||||||| Sbjct 4495791 ---GTTGCTT----GCAAAAATCAGTCTCTGCTGATCAAGAGGAATTACTTCCTTATCCT 4495843 Query 140647 GAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCT 140706 | || || || | | || || || | ||| | ||||| | || || || | |||| Sbjct 4495844 GGATCTTGGCCTGTGTGTTTTCTATTGGATCTGGGTGTTCAGCCTCCAGAGTGATGGTCT 4495903 Query 140707 TTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 | || | || ||||| || |||||| |||| Sbjct 4495904 TCCCCATAAGGGTTTTCACGAAAATCCGCAT 4495934 >seq375 Length=1568959 Score = 98.7 bits (108), Expect = 3e-15 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 140526 AGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGATAATGTTCGCCCATCT 140585 ||||| || || ||||| ||| |||| || ||| | |||||||| | | |||||| Sbjct 1493371 AGAACCAGGTGCAGAGTTGACCCTTTCTGGATAATGTAATCAGAAAGACTGATGCCATCT 1493312 Query 140586 TCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCC 140645 || || || || || ||||||| || | ||||| ||||| || || ||||||||||| Sbjct 1493311 TCCAGCTGCTTGCCTACAAAGATGAGCCTCTGCTGGTCAGGGGGGATGCCTTCTTTATCT 1493252 Query 140646 TGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTC 140705 || || ||||| || ||||| || | | | ||||| || || || | | ||| Sbjct 1493251 TGGATCTTAGCCTTCACATTCCTGATGGTGTTACTGGGTTCCACCTCCAGAGAGATAGTC 1493192 Query 140706 TTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || | | | || || || ||||| |||||||| Sbjct 1493191 TTGCTGATCAGGGTCTTCACAAAGATCTGCAT 1493160 >seq138 Length=2487289 Score = 96.9 bits (106), Expect = 1e-14 Identities = 85/106 (80%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 349608 ATGCTGTTATTACTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATG 349667 |||| ||| ||||||||||||||||||| ||||||||||| || ||||| ||||||| Sbjct 366729 ATGCAGTTGTTACTGTACCAGCCTATTTCAATGATGCCCAACGCCAGGCAACCAAAGATG 366670 Query 349668 CTGGCAGCATTGCGGGGTTAAATGTTCTAAGAATGATTAATGAACC 349713 | || | ||||| || || || ||| | || || ||||||||||| Sbjct 366669 CAGGAACTATTGCTGGATTGAACGTTATGAGGATCATTAATGAACC 366624 Score = 86.0 bits (94), Expect = 2e-11 Identities = 103/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 350177 ATTGATGAAGTAGTTTTAGTTGGTGGTTCTACACGTATTCCAAAAGTTCAACAGTTACTA 350236 ||||||||| | ||| | |||||||| ||||| || || || || ||||||| | | Sbjct 365915 ATTGATGAAATTGTTCTTGTTGGTGGCTCTACTCGAATCCCGAAGATTCAACAACTGGTT 365856 Query 350237 TCTGAGTTTTTTAATGGCAAAGAACCTTCTAGATCAATTAATCCAGATGAAGCTGTTGCA 350296 ||||| || |||||||| || || || | || || || ||||| ||||| ||| Sbjct 365855 AAAGAGTTCTTCAATGGCAAGGAGCCATCCCGTGGCATCAACCCCGATGAGGCTGTAGCA 365796 Query 350297 TATGGTGCTGCTGTTCAGGC 350316 || ||||||||||| ||||| Sbjct 365795 TACGGTGCTGCTGTCCAGGC 365776 >seq342 Length=1642288 Score = 95.1 bits (104), Expect = 4e-14 Identities = 150/209 (72%), Gaps = 7/209 (3%) Strand=Plus/Minus Query 140529 ACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGATAATGTTCGCCCATCTTCA 140588 || ||||| ||||| | ||| ||| ||| || || || || || |||||| |||| Sbjct 1431347 ACGAGATGCAGAGTGGTCTCCTTTGGAACGTTGTAGGG-GACAAAGTACGCCCACCTTCC 1431289 Query 140589 AGTTGTTT--TCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCT 140646 ||||| || ||| | ||||| || |||||||| |||||||||||||| | ||||| Sbjct 1431288 AGTTGCTTGCTCCTG--AAGATCAGTTCCTGCTGATC-GGAGGAATTCCTTCCTCATCCT 1431232 Query 140647 GAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCT 140706 | ||||| | |||||| || || | || || |||||||| || || || | |||| Sbjct 1431231 GGATTTTGCCCCTTACATCTTCTATTGTATTTGAGGGTTCAACCTCGAGGGTGATGGTCT 1431172 Query 140707 TTCCGGTTAGTGTTTTTACAAAAATCTGC 140735 |||| | | ||||| | ||||||||| Sbjct 1431171 TTCCCATATGGGTTTTCA-TAAAATCTGC 1431144 >seq219 Length=2096153 Score = 95.1 bits (104), Expect = 4e-14 Identities = 130/179 (73%), Gaps = 2/179 (1%) Strand=Plus/Minus Query 140510 ACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGA 140569 ||||||| | | ||| | |||||||||||| ||||| |||||||| || | ||||| Sbjct 573094 ACCACCATGAAGTCTCAACCAAAGATGAAGAGTGGACTCCTTTTGAATGTTGTG-TCAGA 573036 Query 140570 TAAT-GTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAG 140628 ||| || || | ||||| |||| | ||| | ||||| || | || |||||||| | Sbjct 573035 TAAAAGTACGTCTGTCTTCTCGTTGCTCGCCAACGAAGATCAGTCTCTGTTGATCAGGGG 572976 Query 140629 GAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCA 140687 |||||||||| || | ||| || || || ||| || | || | | ||| || |||||| Sbjct 572975 GAATTCCTTCCTTGTTCTGGATCTTGGCCTTTGCAATTTCTGTTGTATCTGAGGGTTCA 572917 >seq39 Length=3881480 Score = 95.1 bits (104), Expect = 4e-14 Identities = 73/87 (84%), Gaps = 0/87 (0%) Strand=Plus/Plus Query 140550 TTTTGAATATTATAATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATT 140609 |||||||| || || ||||| || || || |||||||| ||||| || ||||||||||| Sbjct 2295165 TTTTGAATGTTGTAGTCAGACAAAGTACGTCCATCTTCCAGTTGCTTGCCAGCAAAGATC 2295224 Query 140610 AGACGTTGCTGATCAGGAGGAATTCCT 140636 || | ||||||||||||||||||||| Sbjct 2295225 AGTCTCTGCTGATCAGGAGGAATTCCT 2295251 >seq69 Length=3213852 Score = 93.3 bits (102), Expect = 1e-13 Identities = 129/180 (72%), Gaps = 8/180 (4%) Strand=Plus/Minus Query 140510 ACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGA 140569 ||||||| | | ||| | ||||| |||||||| |||| ||| |||| || | ||||| Sbjct 2841990 ACCACCATGAAGTCTCAACACAAGGTGAAGAGTGAACTCCTTTAGAATGTTGTGGTCAGA 2841931 Query 140570 TAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGG 140629 || || |||| ||| ||||| || |||| ||||| || |||||||||||| Sbjct 2841930 ----GTACGTCCATATTCCAGTTGCTTGCCAGTGAAGATCAGTGTCCACTGATCAGGAGG 2841875 Query 140630 AATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAAC 140689 |||||||| |||||||| || | | ||| ||| || || | ||| || | |||||| Sbjct 2841874 AATTCCTTTCTTATCCTGGATCTCA----TTATATTTTCTATTGTATCTGAGGATTCAAC 2841819 >seq1861 Length=314839 Score = 91.5 bits (100), Expect = 4e-13 Identities = 103/138 (75%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 54818 ATTTTTCATTGGCAAGCAACAATTATGGGACCAGAAGATACCCCGTATCAAGGTGGTATA 54877 || ||||||||||||||||||||||||||||| | || | | | |||||||| | || Sbjct 255134 ATGTTTCATTGGCAAGCAACAATTATGGGACCTAATGACAGCTCATATCAAGGCAATGTA 255075 Query 54878 TTTGAGTTAAGAATTGATTTTCCACAAGATTATCCATTTAAACCTCCAAATGTAGTTTTT 54937 || || | |||| ||||||| ||||||| | || ||||| || || || | ||| Sbjct 255074 TTCTTTTTGATAATTCATTTTCCTACAGATTATACCTTCAAACCACCTAAGGTTGCATTT 255015 Query 54938 ACTACAAAGATTTATCAT 54955 | |||| ||||||||| Sbjct 255014 GCAACAAGAATTTATCAT 254997 >seq861 Length=883633 Score = 86.0 bits (94), Expect = 2e-11 Identities = 136/193 (70%), Gaps = 4/193 (2%) Strand=Plus/Minus Query 140548 CTTTTTGAATATTATAATCAGATA--ATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAA 140605 |||| || || || || ||||| | |||| | |||||||| || || || || ||||| Sbjct 499600 CTTTCTGGATGTTGTAGTCAGAAAGAATGT--GGCCATCTTCCAGCTGCTTGCCTGCAAA 499543 Query 140606 GATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATT 140665 ||| || | ||||| |||| || || |||||||||||||| | || || || ||||| Sbjct 499542 GATGAGCCTCTGCTGGCCAGGGGGGATGCCTTCTTTATCCTGGGTCTTGGCCTTCACATT 499483 Query 140666 ATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTAC 140725 | || | ||| ||||| | || || || | ||||| ||||| || || || || Sbjct 499482 CTTCATGGTATCGCTGGGTTCCAACTCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCAC 499423 Query 140726 AAAAATCTGCATT 140738 || | ||| ||| Sbjct 499422 GAAGACCTGTATT 499410 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1513672783613001