Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ailuropoda_20melanoleuca_20[refseq_20GCF_5F000004335.2_202009-12-15]
81,467 sequences; 2,299,509,015 total letters
Query= NC_028112.1
Length=178262
Score E
Sequences producing significant alignments: (Bits) Value
seq17 113 5e-20
seq522 107 2e-18
seq448 93.3 5e-14
seq11 89.7 6e-13
seq497 86.0 7e-12
seq16 86.0 7e-12
seq861 84.2 2e-11
seq1096 82.4 9e-11
seq870 82.4 9e-11
>seq17
Length=4663558
Score = 113 bits (124), Expect = 5e-20
Identities = 159/225 (71%), Gaps = 9/225 (4%)
Strand=Plus/Minus
Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464
|||||| ||||| || ||||| | || || ||||| || || || ||||| ||| || |
Sbjct 4172749 AATGCAGATCTTCGTGAAGACCTTGACAGGTAAGACCATCACCCTGGAGGTGGAGCCAAG 4172690
Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAA---------GGAGGGAATTCC 27515
|| | ||| | || | ||||| || || |||||||| |||||| || ||
Sbjct 4172689 CGACACCATCGAGAACGTCAAGGCGAAGATCCAGGACAAACAGGACAAGGAGGGCATCCC 4172630
Query 27516 TCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGC 27575
|| ||||||||| | | || ||||| || || || || || |||| || ||||| |
Sbjct 4172629 CCCCGACCAGCAGAGGTTGATCTTTGCGGGGAAACAGCTGGAAGATGGGCGCACCCTGTC 4172570
Query 27576 AGACTATAATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCG 27620
||||| || |||| |||||||||||||| || | ||| ||||
Sbjct 4172569 TGACTACAACATCCAGAAGGAATCCACTCTGCACTTGGTCCTGCG 4172525
>seq522
Length=1281495
Score = 107 bits (118), Expect = 2e-18
Identities = 139/191 (73%), Gaps = 1/191 (1%)
Strand=Plus/Minus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
||||| |||| ||| ||||| || || | |||||| | | ||| ||||| ||||| ||
Sbjct 1054894 ATGCAGATCTCTGTGAAGACCCTGACAG-CAAGACCGTCATTCTCGAGGTCGAGTCCAGT 1054836
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|| || || || | || || ||||| || ||||||||||| || | || |||| |
Sbjct 1054835 GACGCCACTGAGAAAATTAAAGCCAAAATCCACGACAAGGAGGGCATCCTGCCTGACCCG 1054776
Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585
|||| ||| |||||||| ||||| || || ||||||| || | || |||||||| ||
Sbjct 1054775 CAGCATCTCATTTTTGCGGGTAAACAGCTGGAGGATGGCCGCATTCTCTCAGACTATCAT 1054716
Query 27586 GTCCAAAAGGA 27596
| || || ||
Sbjct 1054715 ATTCAGAAAGA 1054705
>seq448
Length=1420016
Score = 93.3 bits (102), Expect = 5e-14
Identities = 130/181 (72%), Gaps = 1/181 (1%)
Strand=Plus/Minus
Query 27409 CAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGAT 27468
|| |||||||| ||||| || || ||||||| || || || | ||||| ||| ||||
Sbjct 823666 CAGATCTTTGTGAAGACCCTGGCCAGCAAGACCATGACCCTCGGGGTTGCGTCCAGTGAC 823607
Query 27469 AGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAG 27528
| || | ||| | || || |||| || ||||||||||| | || || || ||||||
Sbjct 823606 ACCACAGAGAATGTCAAAGCCAAAACCCAAGACAAGGAGGGCA-GCCCCCTGATCAGCAG 823548
Query 27529 CGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTC 27588
||||| || |||| || || || || ||||||| | | || | ||||| ||||||
Sbjct 823547 CGTCTGATCTTTGTGGGCAAACAGCTGGAGGATGGCACTGCTCTCTCTGACTACAATGTC 823488
Query 27589 C 27589
|
Sbjct 823487 C 823487
>seq11
Length=5147107
Score = 89.7 bits (98), Expect = 6e-13
Identities = 82/104 (79%), Gaps = 0/104 (0%)
Strand=Plus/Plus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
||||| |||||||| ||||| || || |||||||| || || |||||||| ||| | ||
Sbjct 1825297 ATGCAGATCTTTGTGAAGACCCTGACGGGCAAGACCATCACCCTTGAGGTCGAGCCCAGT 1825356
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGG 27509
|| | ||||| ||| | || || ||||| || |||||||||||
Sbjct 1825357 GACACCATTGAGAATGTCAAAGCCAAAATCCAAGACAAGGAGGG 1825400
>seq497
Length=1337528
Score = 86.0 bits (94), Expect = 7e-12
Identities = 83/107 (78%), Gaps = 0/107 (0%)
Strand=Plus/Plus
Query 64726 GCTTTTGCCTGTGTGGAAGGAATTTTCTTTTCTGGGTCATTCTGTTCTATTTTCTGGCTA 64785
|| |||||| |||||||||||| ||||||||||| || || || || ||||||||
Sbjct 317707 GCCTTTGCCGCTGTGGAAGGAATCTTCTTTTCTGGTTCTTTTGCATCAATATTCTGGCTC 317766
Query 64786 AAAAAGCGGGGCCTGATGCCAGGTCTGTCGTTTTCGAACGAGCTGAT 64832
|| || || ||||||||||| || || ||||||| || || || ||
Sbjct 317767 AAGAAACGTGGCCTGATGCCTGGCCTCACGTTTTCCAATGAACTTAT 317813
>seq16
Length=4665003
Score = 86.0 bits (94), Expect = 7e-12
Identities = 143/206 (69%), Gaps = 7/206 (3%)
Strand=Plus/Minus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
|||| || || || || || |||| || ||||| || ||||| |||| |||
Sbjct 4495934 ATGCGGATTTTCGTGAAAACCCTTATGGGGAAGACCATCACTCTGGAGGCTGAACACCCA 4495875
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
||| || | ||| |||| || || ||||| ||||| | |||||||| || |||
Sbjct 4495874 GATCCAATAGAAAACACACAGGCCAAGATCCAGGATAAGGAAGTAATTCCTCTTGATCAG 4495815
Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585
||| | || |||||||| ||||||| | ||||| |||| | | |||| | |
Sbjct 4495814 CAGAGACTGATTTTTGC----AAGCAAC---AAGATGAGTGTACTTTGTCTGACTGCAGT 4495762
Query 27586 GTCCAAAAGGAATCCACTCTTCATCT 27611
|| |||||||| ||||||||||||||
Sbjct 4495761 GTTCAAAAGGAGTCCACTCTTCATCT 4495736
>seq861
Length=883633
Score = 84.2 bits (92), Expect = 2e-11
Identities = 139/201 (69%), Gaps = 0/201 (0%)
Strand=Plus/Plus
Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464
||| || |||| || ||||| || ||||||||||| || || || ||| | || | |
Sbjct 499410 AATACAGGTCTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTGGAGTTGGAACCCAG 499469
Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524
|||| ||| ||| ||||||| || | ||||| || || || || || || | |||
Sbjct 499470 CGATACCATGAAGAATGTGAAGGCCAAGACCCAGGATAAAGAAGGCATCCCCCCTGGCCA 499529
Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584
|||| | || || ||||| || ||||| || || |||| | | || | ||||| ||
Sbjct 499530 GCAGAGGCTCATCTTTGCAGGCAAGCAGCTGGAAGATGGCCACATTCTTTCTGACTACAA 499589
Query 27585 TGTCCAAAAGGAATCCACTCT 27605
|||| || | ||| || ||
Sbjct 499590 CATCCAGAAAGTATCAACCCT 499610
>seq1096
Length=697923
Score = 82.4 bits (90), Expect = 9e-11
Identities = 93/125 (74%), Gaps = 0/125 (0%)
Strand=Plus/Plus
Query 32125 ACCATTGTCAACCTTGCTCAGAACTTTGTCGGTGCAAATAACCTGAACTTACTCGAGCCA 32184
|| ||||| || | |||||||||||||| || || ||| | ||||| || ||||
Sbjct 295741 ACGATTGTGAATTTGGCTCAGAACTTTGTGGGAAGCAACAACATTAACTTGCTTCAGCCT 295800
Query 32185 TCTGGACAGTTTGGGACCCGGCTCGCCGGTGGCAAGGATGCTGCGAGCTCCCGTTACATC 32244
||| |||||||| || ||||| |||||||| |||||||| ||| | ||||| ||
Sbjct 295801 ATTGGTCAGTTTGGAACTCGGCTTCATGGTGGCAAAGATGCTGCAAGCCCTCGTTATATT 295860
Query 32245 TTCAC 32249
|||||
Sbjct 295861 TTCAC 295865
>seq870
Length=870195
Score = 82.4 bits (90), Expect = 9e-11
Identities = 93/125 (74%), Gaps = 0/125 (0%)
Strand=Plus/Minus
Query 32125 ACCATTGTCAACCTTGCTCAGAACTTTGTCGGTGCAAATAACCTGAACTTACTCGAGCCA 32184
|||||| |||| | |||||||| ||||| ||| ||||| |||||| | | ||||
Sbjct 250667 ACCATTATCAATTTGGCTCAGAATTTTGTGGGTAGCAATAATCTGAACCTCTTGCAGCCC 250608
Query 32185 TCTGGACAGTTTGGGACCCGGCTCGCCGGTGGCAAGGATGCTGCGAGCTCCCGTTACATC 32244
||| |||||||| || |||| |||||||||||| |||| || | || ||||||
Sbjct 250607 ATTGGTCAGTTTGGTACTAGGCTGCATGGTGGCAAGGATTCTGCTAGTCCTCGATACATC 250548
Query 32245 TTCAC 32249
|||||
Sbjct 250547 TTCAC 250543
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 569729631533040
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |