Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ailuropoda_20melanoleuca_20[refseq_20GCF_5F000004335.2_202009-12-15] 81,467 sequences; 2,299,509,015 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq17 113 5e-20 seq522 107 2e-18 seq448 93.3 5e-14 seq11 89.7 6e-13 seq497 86.0 7e-12 seq16 86.0 7e-12 seq861 84.2 2e-11 seq1096 82.4 9e-11 seq870 82.4 9e-11 >seq17 Length=4663558 Score = 113 bits (124), Expect = 5e-20 Identities = 159/225 (71%), Gaps = 9/225 (4%) Strand=Plus/Minus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||||| ||||| || ||||| | || || ||||| || || || ||||| ||| || | Sbjct 4172749 AATGCAGATCTTCGTGAAGACCTTGACAGGTAAGACCATCACCCTGGAGGTGGAGCCAAG 4172690 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAA---------GGAGGGAATTCC 27515 || | ||| | || | ||||| || || |||||||| |||||| || || Sbjct 4172689 CGACACCATCGAGAACGTCAAGGCGAAGATCCAGGACAAACAGGACAAGGAGGGCATCCC 4172630 Query 27516 TCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGC 27575 || ||||||||| | | || ||||| || || || || || |||| || ||||| | Sbjct 4172629 CCCCGACCAGCAGAGGTTGATCTTTGCGGGGAAACAGCTGGAAGATGGGCGCACCCTGTC 4172570 Query 27576 AGACTATAATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCG 27620 ||||| || |||| |||||||||||||| || | ||| |||| Sbjct 4172569 TGACTACAACATCCAGAAGGAATCCACTCTGCACTTGGTCCTGCG 4172525 >seq522 Length=1281495 Score = 107 bits (118), Expect = 2e-18 Identities = 139/191 (73%), Gaps = 1/191 (1%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| |||| ||| ||||| || || | |||||| | | ||| ||||| ||||| || Sbjct 1054894 ATGCAGATCTCTGTGAAGACCCTGACAG-CAAGACCGTCATTCTCGAGGTCGAGTCCAGT 1054836 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || || || || | || || ||||| || ||||||||||| || | || |||| | Sbjct 1054835 GACGCCACTGAGAAAATTAAAGCCAAAATCCACGACAAGGAGGGCATCCTGCCTGACCCG 1054776 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 |||| ||| |||||||| ||||| || || ||||||| || | || |||||||| || Sbjct 1054775 CAGCATCTCATTTTTGCGGGTAAACAGCTGGAGGATGGCCGCATTCTCTCAGACTATCAT 1054716 Query 27586 GTCCAAAAGGA 27596 | || || || Sbjct 1054715 ATTCAGAAAGA 1054705 >seq448 Length=1420016 Score = 93.3 bits (102), Expect = 5e-14 Identities = 130/181 (72%), Gaps = 1/181 (1%) Strand=Plus/Minus Query 27409 CAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGAT 27468 || |||||||| ||||| || || ||||||| || || || | ||||| ||| |||| Sbjct 823666 CAGATCTTTGTGAAGACCCTGGCCAGCAAGACCATGACCCTCGGGGTTGCGTCCAGTGAC 823607 Query 27469 AGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAG 27528 | || | ||| | || || |||| || ||||||||||| | || || || |||||| Sbjct 823606 ACCACAGAGAATGTCAAAGCCAAAACCCAAGACAAGGAGGGCA-GCCCCCTGATCAGCAG 823548 Query 27529 CGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTC 27588 ||||| || |||| || || || || ||||||| | | || | ||||| |||||| Sbjct 823547 CGTCTGATCTTTGTGGGCAAACAGCTGGAGGATGGCACTGCTCTCTCTGACTACAATGTC 823488 Query 27589 C 27589 | Sbjct 823487 C 823487 >seq11 Length=5147107 Score = 89.7 bits (98), Expect = 6e-13 Identities = 82/104 (79%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| |||||||| ||||| || || |||||||| || || |||||||| ||| | || Sbjct 1825297 ATGCAGATCTTTGTGAAGACCCTGACGGGCAAGACCATCACCCTTGAGGTCGAGCCCAGT 1825356 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGG 27509 || | ||||| ||| | || || ||||| || ||||||||||| Sbjct 1825357 GACACCATTGAGAATGTCAAAGCCAAAATCCAAGACAAGGAGGG 1825400 >seq497 Length=1337528 Score = 86.0 bits (94), Expect = 7e-12 Identities = 83/107 (78%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 64726 GCTTTTGCCTGTGTGGAAGGAATTTTCTTTTCTGGGTCATTCTGTTCTATTTTCTGGCTA 64785 || |||||| |||||||||||| ||||||||||| || || || || |||||||| Sbjct 317707 GCCTTTGCCGCTGTGGAAGGAATCTTCTTTTCTGGTTCTTTTGCATCAATATTCTGGCTC 317766 Query 64786 AAAAAGCGGGGCCTGATGCCAGGTCTGTCGTTTTCGAACGAGCTGAT 64832 || || || ||||||||||| || || ||||||| || || || || Sbjct 317767 AAGAAACGTGGCCTGATGCCTGGCCTCACGTTTTCCAATGAACTTAT 317813 >seq16 Length=4665003 Score = 86.0 bits (94), Expect = 7e-12 Identities = 143/206 (69%), Gaps = 7/206 (3%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 |||| || || || || || |||| || ||||| || ||||| |||| ||| Sbjct 4495934 ATGCGGATTTTCGTGAAAACCCTTATGGGGAAGACCATCACTCTGGAGGCTGAACACCCA 4495875 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 ||| || | ||| |||| || || ||||| ||||| | |||||||| || ||| Sbjct 4495874 GATCCAATAGAAAACACACAGGCCAAGATCCAGGATAAGGAAGTAATTCCTCTTGATCAG 4495815 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||| | || |||||||| ||||||| | ||||| |||| | | |||| | | Sbjct 4495814 CAGAGACTGATTTTTGC----AAGCAAC---AAGATGAGTGTACTTTGTCTGACTGCAGT 4495762 Query 27586 GTCCAAAAGGAATCCACTCTTCATCT 27611 || |||||||| |||||||||||||| Sbjct 4495761 GTTCAAAAGGAGTCCACTCTTCATCT 4495736 >seq861 Length=883633 Score = 84.2 bits (92), Expect = 2e-11 Identities = 139/201 (69%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 ||| || |||| || ||||| || ||||||||||| || || || ||| | || | | Sbjct 499410 AATACAGGTCTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTGGAGTTGGAACCCAG 499469 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 |||| ||| ||| ||||||| || | ||||| || || || || || || | ||| Sbjct 499470 CGATACCATGAAGAATGTGAAGGCCAAGACCCAGGATAAAGAAGGCATCCCCCCTGGCCA 499529 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 |||| | || || ||||| || ||||| || || |||| | | || | ||||| || Sbjct 499530 GCAGAGGCTCATCTTTGCAGGCAAGCAGCTGGAAGATGGCCACATTCTTTCTGACTACAA 499589 Query 27585 TGTCCAAAAGGAATCCACTCT 27605 |||| || | ||| || || Sbjct 499590 CATCCAGAAAGTATCAACCCT 499610 >seq1096 Length=697923 Score = 82.4 bits (90), Expect = 9e-11 Identities = 93/125 (74%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 32125 ACCATTGTCAACCTTGCTCAGAACTTTGTCGGTGCAAATAACCTGAACTTACTCGAGCCA 32184 || ||||| || | |||||||||||||| || || ||| | ||||| || |||| Sbjct 295741 ACGATTGTGAATTTGGCTCAGAACTTTGTGGGAAGCAACAACATTAACTTGCTTCAGCCT 295800 Query 32185 TCTGGACAGTTTGGGACCCGGCTCGCCGGTGGCAAGGATGCTGCGAGCTCCCGTTACATC 32244 ||| |||||||| || ||||| |||||||| |||||||| ||| | ||||| || Sbjct 295801 ATTGGTCAGTTTGGAACTCGGCTTCATGGTGGCAAAGATGCTGCAAGCCCTCGTTATATT 295860 Query 32245 TTCAC 32249 ||||| Sbjct 295861 TTCAC 295865 >seq870 Length=870195 Score = 82.4 bits (90), Expect = 9e-11 Identities = 93/125 (74%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 32125 ACCATTGTCAACCTTGCTCAGAACTTTGTCGGTGCAAATAACCTGAACTTACTCGAGCCA 32184 |||||| |||| | |||||||| ||||| ||| ||||| |||||| | | |||| Sbjct 250667 ACCATTATCAATTTGGCTCAGAATTTTGTGGGTAGCAATAATCTGAACCTCTTGCAGCCC 250608 Query 32185 TCTGGACAGTTTGGGACCCGGCTCGCCGGTGGCAAGGATGCTGCGAGCTCCCGTTACATC 32244 ||| |||||||| || |||| |||||||||||| |||| || | || |||||| Sbjct 250607 ATTGGTCAGTTTGGTACTAGGCTGCATGGTGGCAAGGATTCTGCTAGTCCTCGATACATC 250548 Query 32245 TTCAC 32249 ||||| Sbjct 250547 TTCAC 250543 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 569729631533040