Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ailuropoda_20melanoleuca_20[refseq_20GCF_5F000004335.2_202009-12-15] 81,467 sequences; 2,299,509,015 total letters Query= NC_028379.1 Length=205896 Score E Sequences producing significant alignments: (Bits) Value seq810 163 4e-35 >seq810 Length=940331 Score = 163 bits (180), Expect = 4e-35 Identities = 255/363 (70%), Gaps = 4/363 (1%) Strand=Plus/Plus Query 13682 GGAAGAGGTCGAGTTTCCCATCGCCTACTCGATCGTGATCCACCACAAGATCGAGATGTT 13741 |||||||| ||||||||||| ||||| || || ||| | |||||||| ||||| ||| | Sbjct 564622 GGAAGAGGCGGAGTTTCCCATAGCCTATTCCATAGTGGTTCACCACAAAATCGAAATGCT 564681 Query 13742 CGAGCGCCTCCTGAGGGCCATCTACGCCCCGCAGAACCTCTACTGCGTCCACGTGGACTC 13801 || || |||||||||||||||||| || ||||| |||||||| | ||||||||| Sbjct 564682 TGACCGGCTCCTGAGGGCCATCTACATGCCCCAGAATTTCTACTGCATTCACGTGGACAG 564741 Query 13802 CAAGTCCGGCGA--CGAGTTCATCCGGGGCGTCTCGGCCATCGCCAGGTGCTTCCCTAAC 13859 ||||| | ||| || || ||| || | | | |||||| |||||| |||| Sbjct 564742 AAAGTCAGCCGATTCGTTTTTGGCCGCGGTGATT--GGCATCGCGTCCTGCTTCAGTAAC 564799 Query 13860 GTGGCCCTGGCCCACCGGCTGCACGACGTGGTGTACGGCTCCTGGAGTCGCGTGCAGGCC 13919 || ||||| | |||| | |||||||| | ||| |||||||| || |||||| Sbjct 564800 GTCTTTGTGGCCAGTCAGCTGGAGAGTGTGGTGTATGCCTCTTGGAGTCGGGTTCAGGCC 564859 Query 13920 GACCTCAGCTGCATGTCGGACCTGGACGCCTCCCCCGTCAAGTGGAGGTACCTGCTCAAC 13979 ||||||| ||||||| ||| | || | | |||| |||| || | || Sbjct 564860 GACCTCAACTGCATGCAAGACGTCTACAGGATGAGTGCGGACTGGAAGTACTTGATAAAT 564919 Query 13980 CTGTGCGGGATGGACTTCCCGCTCAAGACCAACCTGGAGATCGTGCGGGCGCTGAAGGCC 14039 || ||||| |||||||| || | || |||||| |||| || || | | ||| ||| | Sbjct 564920 CTTTGCGGTATGGACTTTCCTATTAAAACCAACTTGGAAATTGTCCAGAAGCTCAAGTCG 564979 Query 14040 CTG 14042 ||| Sbjct 564980 CTG 564982 Score = 87.8 bits (96), Expect = 2e-12 Identities = 186/274 (68%), Gaps = 8/274 (3%) Strand=Plus/Plus Query 14277 GACACGTACAGCCCCGACGAGCACCTGTGGGCCACCGTGCAGAGAATGTACGGGACGCCC 14336 |||||||||||||| || ||| | || |||||||| | ||||| || | || | || Sbjct 565214 GACACGTACAGCCCGGATGAGTATCTCTGGGCCACTATCCAGAGGATC--CCTGATGTCC 565271 Query 14337 GGGGGGATCCCCGTTC--ACGTCA--AGTACGACACCTCGGACATGTGGGCCAAGGTCAG 14392 ||| |||| || | | | || |||| |||| || |||||| || | | || Sbjct 565272 CGGGC--TCCCTGTCCCTAAGCCAGAAGTATGACATGTCCGACATGCACGCGATTGCAAG 565329 Query 14393 GTTCGTCAAGTGGCACTACTACGAGGGGGATATCAAGAAAGGGGCCCTGTACCCGCCTTG 14452 ||||||||| ||||| |||| ||| || ||| | || || |||| ||||| || || Sbjct 565330 GTTCGTCAAATGGCAGTACTTCGAAGGTGATGTTTCCAAGGGTGCCCCCTACCCACCCTG 565389 Query 14453 CGACGGCATCCACGTCCACGCCATCTGCATCTTCGGGTCCGGCGACGTGAAGTGGCTGAA 14512 | | || ||||||| | | | ||| | ||||| | || ||| |||| ||| || Sbjct 565390 CAATGGGGTCCACGTGCGTTCTGTGTGCGTGTTCGGAGCAGGTGACTTGAACTGGATGTT 565449 Query 14513 GAGCGTCCCGCACCTGTTCGCCAACAAGTTCGAC 14546 || | ||| |||| ||||||||||| ||| Sbjct 565450 ACGCAAGCATCACTTGTTTGCCAACAAGTTTGAC 565483 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658068381169920