Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ailuropoda_20melanoleuca_20[refseq_20GCF_5F000004335.2_202009-12-15] 81,467 sequences; 2,299,509,015 total letters Query= NC_028461.1 Length=127011 Score E Sequences producing significant alignments: (Bits) Value seq592 165 7e-36 >seq592 Length=1169299 Score = 165 bits (182), Expect = 7e-36 Identities = 135/164 (82%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 29942 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGT 30001 || ||||||| ||| || |||||||| ||||| || | ||||||||||||||| ||||| Sbjct 485547 AGGCCGGTGATGTGCGCAATCATGTAGGTGAGCAGGGCGTAGCTGGCGATGTTGAAGGGC 485606 Query 30002 ACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTC 30061 || || || ||||||||||||||||||||||| ||||| || || ||||| |||| | Sbjct 485607 ACGCCCAGGCCCATGTCCCCCGACCTCTGGTACAGCTGGCAGGACAGCTCGCCGTTCACC 485666 Query 30062 ACGTAAAACTGACACATGGCGTGGCACGGAGGAAGAGCCATGAG 30105 ||||| ||||| || | ||| |||||||||||||| ||||| || Sbjct 485667 ACGTAGAACTGGCAGAGGGCATGGCACGGAGGAAGGGCCATCAG 485710 Score = 113 bits (124), Expect = 4e-20 Identities = 128/169 (76%), Gaps = 2/169 (1%) Strand=Plus/Plus Query 30223 CATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTC 30282 ||| || |||| ||||| || |||||||||||||| || || || || || || | || Sbjct 488136 CATATCTTTGTATTCTGCCCCAAAATGCCTCCACTGAAAGCCATAAACTGGGCCTAAATC 488195 Query 30283 TCCCTCTTCCCTG-TGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGT 30341 || ||||| ||| ||| ||| ||| ||||||| ||||||| || || ||||||| Sbjct 488196 CCCTTCTTCTCTGCTGC-AGAATCCCAGGCTGTCCAAGAAGTCTCGAGACCCATTGGCGT 488254 Query 30342 CCCAGATCTTTACCCCCTTCTCAGAGAGCTCTTTGGAGTTTGTGGACCC 30390 ||||||| || || ||||| ||| ||||| || | |||||||||||| Sbjct 488255 CCCAGATTTTCACTCCCTTGGAAGACAGCTCCTTAGCGTTTGTGGACCC 488303 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 405906982910964