Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ailuropoda_20melanoleuca_20[refseq_20GCF_5F000004335.2_202009-12-15] 81,467 sequences; 2,299,509,015 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq456 107 2e-18 >seq456 Length=1409724 Score = 107 bits (118), Expect = 2e-18 Identities = 161/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 ||||||||| || || || || ||||| |||||| | || || || || ||||| || Sbjct 1114094 CATGCAGATCTTCGTGAAGACCCTGACTGGCAAGACCATCACCCTGGAGGTGGAGCCCAG 1114153 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 ||| | || |||| || || || || ||||| ||||| ||||| || || || || Sbjct 1114154 TGACACCATCGAGAATGTGAAGGCCAAGATCCAAGATAAAGAGGGCATCCCCCCTGACCA 1114213 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 ||| | | || | || ||||| || ||||||| | || |||| |||||||| Sbjct 1114214 GCAGAGGCTCATCTTTGCAGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGATTACAA 1114273 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGC 27215 ||| || || |||||||| | || ||||| | ||| || |||||||| Sbjct 1114274 CATCCAGAAAGAGTCGACTCTCCACCTGGTTCTCCGTCTGAGGGGTGGC 1114322 Score = 105 bits (116), Expect = 6e-18 Identities = 162/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 ||||||||| || || || || ||||| |||||| | || || || || ||||| || Sbjct 1113410 CATGCAGATCTTCGTGAAGACCCTGACTGGCAAGACCATCACCCTGGAGGTGGAGCCCAG 1113469 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 ||| | || |||| || || || || ||||| ||||| ||||| || || || || Sbjct 1113470 TGACACCATCGAGAATGTGAAGGCCAAGATCCAAGATAAAGAGGGCATCCCCCCTGACCA 1113529 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 ||| | | || | || ||||| || ||||||| | || |||| |||||||| Sbjct 1113530 GCAGAGGCTCATCTTTGCAGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGATTACAA 1113589 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||| || || ||||||||| | || |||| |||| || | |||||||| Sbjct 1113590 CATCCAGAAAGAGTCGACCCTGCACCTGGTCCTGCGCCTGAGAGGTGGCAT 1113640 Score = 105 bits (116), Expect = 6e-18 Identities = 162/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 ||||||||| || || || || ||||| |||||| | || || || || ||||| || Sbjct 1113638 CATGCAGATCTTCGTGAAGACCCTGACTGGCAAGACCATCACCCTGGAGGTGGAGCCCAG 1113697 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 ||| | || |||| || || || || ||||| ||||| ||||| || || || || Sbjct 1113698 TGACACCATCGAGAATGTGAAGGCCAAGATCCAAGATAAAGAGGGCATCCCCCCTGACCA 1113757 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 ||| | | || | || ||||| || ||||||| | || |||| |||||||| Sbjct 1113758 GCAGAGGCTCATCTTTGCAGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGATTACAA 1113817 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||| || || ||||||||| | || |||| |||| || | |||||||| Sbjct 1113818 CATCCAGAAAGAGTCGACCCTGCACCTGGTCCTGCGCCTGAGAGGTGGCAT 1113868 Score = 105 bits (116), Expect = 6e-18 Identities = 162/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 ||||||||| || || || || ||||| |||||| | || || || || ||||| || Sbjct 1113866 CATGCAGATCTTCGTGAAGACCCTGACTGGCAAGACCATCACCCTGGAGGTGGAGCCCAG 1113925 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 ||| | || |||| || || || || ||||| ||||| ||||| || || || || Sbjct 1113926 TGACACCATCGAGAATGTGAAGGCCAAGATCCAAGATAAAGAGGGCATCCCCCCTGACCA 1113985 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 ||| | | || | || ||||| || ||||||| | || |||| |||||||| Sbjct 1113986 GCAGAGGCTCATCTTTGCAGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGATTACAA 1114045 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||| || || ||||||||| | || |||| |||| || | |||||||| Sbjct 1114046 CATCCAGAAAGAGTCGACCCTGCACCTGGTCCTGCGCCTGAGAGGTGGCAT 1114096 Score = 104 bits (114), Expect = 2e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || || ||||| |||||| | || || || || ||||| || Sbjct 1113183 ATGCAGATCTTCGTGAAGACCCTGACTGGCAAGACCATCACCCTGGAGGTGGAGCCCAGT 1113242 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || |||| || || || || ||||| ||||| ||||| || || || || Sbjct 1113243 GACACCATCGAGAATGTGAAGGCCAAGATCCAAGATAAAGAGGGCATCCCCCCTGACCAG 1113302 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||| | | || | || ||||| || ||||||| | || |||| ||||||||| Sbjct 1113303 CAGAGGCTCATCTTTGCAGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGATTACAAC 1113362 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || || || ||||||||| | || |||| |||| || | |||||||| Sbjct 1113363 ATCCAGAAAGAGTCGACCCTGCACCTGGTCCTGCGCCTGAGAGGTGGCAT 1113412 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434475506283840