Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ailuropoda_20melanoleuca_20[refseq_20GCF_5F000004335.2_202009-12-15]
81,467 sequences; 2,299,509,015 total letters
Query= NC_029132.1
Length=140122
Score E
Sequences producing significant alignments: (Bits) Value
seq592 159 3e-34
seq364 116 3e-21
seq2546 91.5 1e-13
>seq592
Length=1169299
Score = 159 bits (176), Expect = 3e-34
Identities = 132/161 (82%), Gaps = 0/161 (0%)
Strand=Plus/Plus
Query 6620 TGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCCCTAACCCC 6679
|| || |||||||| |||||||| ||||| || || |||||||| ||||| || | |||
Sbjct 485559 TGCGCAATCATGTAGGTGAGCAGGGCGTAGCTGGCGATGTTGAAGGGCACGCCCAGGCCC 485618
Query 6680 ATGTCTCCCGATCGTTGATAGAGCTGGCAGGACAGCTCCCCATTCGCGACGTAGAATTGG 6739
||||| ||||| | || || ||||||||||||||||| || ||| | |||||||| |||
Sbjct 485619 ATGTCCCCCGACCTCTGGTACAGCTGGCAGGACAGCTCGCCGTTCACCACGTAGAACTGG 485678
Query 6740 CAGAGGGTGTGGCACGGGGGGAGCGCCATCAGAGGGAGATC 6780
||||||| |||||||| || || ||||||||||| |||||
Sbjct 485679 CAGAGGGCATGGCACGGAGGAAGGGCCATCAGAGGAAGATC 485719
Score = 159 bits (176), Expect = 3e-34
Identities = 132/161 (82%), Gaps = 0/161 (0%)
Strand=Plus/Minus
Query 34565 GATCTCCCTCTGATGGCGCTCCCCCCGTGCCACACCCTCTGCCAATTCTACGTCGCGAAT 34624
||||| ||||||||||| || || |||||||| |||||||||| |||||||| | |||
Sbjct 485719 GATCTTCCTCTGATGGCCCTTCCTCCGTGCCATGCCCTCTGCCAGTTCTACGTGGTGAAC 485660
Query 34625 GGGGAGCTGTCCTGCCAGCTCTATCAACGATCGGGAGACATGGGGTTAGGGGTGCCGTTC 34684
|| ||||||||||||||||| || || | ||||| |||||||| | || ||||| |||
Sbjct 485659 GGCGAGCTGTCCTGCCAGCTGTACCAGAGGTCGGGGGACATGGGCCTGGGCGTGCCCTTC 485600
Query 34685 AACATTGCTAGTTACGCTCTGCTCACGTACATGATCGCTCA 34725
||||| || || ||||| |||||||| |||||||| || ||
Sbjct 485599 AACATCGCCAGCTACGCCCTGCTCACCTACATGATTGCGCA 485559
Score = 105 bits (116), Expect = 6e-18
Identities = 121/160 (76%), Gaps = 2/160 (1%)
Strand=Plus/Plus
Query 6899 TACTCCGCCCCAAAGTGTCTCCACTGGAACCCGTAGACCGGGCCCAAGTCGCCCTCCTCC 6958
|| || |||||||| || |||||||| || || || || ||||| || || || || ||
Sbjct 488146 TATTCTGCCCCAAAATGCCTCCACTGAAAGCCATAAACTGGGCCTAAATCCCCTTCTTCT 488205
Query 6959 CGAGATGG-GAACCCCCGCTTGTCCAGAAAGTCTCGAGACCCGTGAGCGTCCCAGATCTT 7017
| | || ||| ||| | |||||| |||||||||||||| | ||||||||||| ||
Sbjct 488206 CT-GCTGCAGAATCCCAGGCTGTCCAAGAAGTCTCGAGACCCATTGGCGTCCCAGATTTT 488264
Query 7018 CACCCCCCGGGACGAGAGCTCCTTGGTGTTCGTGGCCCCC 7057
||| ||| ||| || |||||||| | ||| |||| ||||
Sbjct 488265 CACTCCCTTGGAAGACAGCTCCTTAGCGTTTGTGGACCCC 488304
Score = 105 bits (116), Expect = 6e-18
Identities = 121/160 (76%), Gaps = 2/160 (1%)
Strand=Plus/Minus
Query 34288 GGGGGCCACGAACACCAAGGAGCTCTCGTCCCGGGGGGTGAAGATCTGGGACGCTCACGG 34347
|||| |||| ||| | |||||||| || ||| ||| ||||| ||||||||||| | ||
Sbjct 488304 GGGGTCCACAAACGCTAAGGAGCTGTCTTCCAAGGGAGTGAAAATCTGGGACGCCAATGG 488245
Query 34348 GTCTCGAGACTTTCTGGACAAGCGGGGGTTC-CCATCTCGGGAGGAGGGCGACTTGGGCC 34406
|||||||||||| |||||| | ||| ||| || | | || || || || || ||||
Sbjct 488244 GTCTCGAGACTTCTTGGACAGCCTGGGATTCTGCAGC-AGAGAAGAAGGGGATTTAGGCC 488186
Query 34407 CGGTCTACGGGTTCCAGTGGAGACACTTTGGGGCGGAGTA 34446
| || || || || |||||||| || |||||||| || ||
Sbjct 488185 CAGTTTATGGCTTTCAGTGGAGGCATTTTGGGGCAGAATA 488146
>seq364
Length=1593528
Score = 116 bits (128), Expect = 3e-21
Identities = 329/502 (66%), Gaps = 15/502 (3%)
Strand=Plus/Plus
Query 34193 CAGGCCCGATACAACCTTCGGGGCGAATTTCCGCTGCTGACGACGAAACGTGTGTACTGG 34252
||||| | |||| ||| | | |||||||| ||| | || || | |||||| | |||
Sbjct 168766 CAGGCGCACTACAGCCTGAGAGAAGAATTTCCTCTGTTAACAACAACACGTGTATTCTGA 168825
Query 34253 AAGGGCGTGGTCGAGGAGCTGCTGTGGTTCGTGAGGGGGGCCACGAACACCAAGGAGCTC 34312
||||| || | |||||| || ||||||| | | || | || || | ||| |||
Sbjct 168826 AAGGGTGTTTTGGAGGAGTTGTTGTGGTTTATCAAAGGATCTACAAATGCTAAGACACTC 168885
Query 34313 ----TCGTCCCGGGGGGTGAAGATCTGGGACGCTCACGGGTCTCGAGACTTTCTGGACAA 34368
|| ||| ||| ||||| |||||||| || | | || |||||||| | ||||
Sbjct 168886 CCTGTCTTCCAAGGGAGTGAAAATCTGGGATGCCAATGCTTCCCGAGACTTCTTAGACAG 168945
Query 34369 GCGGGGGTTCCCATCTCGGGAGGAGGGCGACTTGGGCCCGGTCTACGGGTTCCAGTGGAG 34428
| ||| ||| | | | | || || || || || || | || || | ||||||||
Sbjct 168946 CCTGGGATTCTCCAGTGGAGTAGAAGGGGATTTAGGTCCAGGTTATGGCTCTCAGTGGAG 169005
Query 34429 A--CACTTTGGGGCGGAGTATCGGGGGAGCGAAGCGGACTATTCGGGACAGGGAGCGGAC 34486
| || || ||||| || || | | || || | |||| || || || | |||
Sbjct 169006 AGGCATTTGGGGGCAGAATACAAAGATAAGGATGCAGGTGATTCAGGTCACGGGGTAGAC 169065
Query 34487 CAGCTGCAGTACGTGATCGACACC-TTGAAGCGGAACCCTGATGACAGAAGGATCGTGAT 34545
|| ||||| | ||| | | || ||||| | | ||| || |||||||| ||| | |
Sbjct 169066 CAACTGCAAAAGGTGTTTGGAACAATTGAAACCAAGCCC-GAGGACAGAAGAATCATACT 169124
Query 34546 GTGCGCGTGGAACCCGAAGGATCTCCCTCTGATGGCGCTCCCCCCGTGCCACACCCTCTG 34605
||| | ||||| || || | ||| ||||| |||| || | || ||||| |||| ||
Sbjct 169125 GTGTGGCTGGAATCCAAAAGCTCTTCCTCTTCTGGCCCTACTTCCCTGCCATGCCCTTTG 169184
Query 34606 CCAATTCTACGTCGCGAATGGGGAGCTGTCCTGCCAGCTCTATCAACGATCGGGAGACAT 34665
|| || ||| | || ||| ||||||||||| || | | | ||||||||
Sbjct 169185 CCTGAACTCCGTGGTGAGTGG-------TCCTGCCAGCTGTACCGGAGGGCAGGAGACAT 169237
Query 34666 GGGGTTAGGGGTGCCGTTCAAC 34687
||| || | ||||| ||||||
Sbjct 169238 GGGCTTGGCTGTGCCTTTCAAC 169259
Score = 116 bits (128), Expect = 3e-21
Identities = 329/502 (66%), Gaps = 15/502 (3%)
Strand=Plus/Minus
Query 6658 GTTGAACGGCACCCCTAACCCCATGTCTCCCGATCGTTGATAGAGCTGGCAGGACAGCTC 6717
|||||| ||||| | || ||||||||||| | | | || |||||||||||
Sbjct 169259 GTTGAAAGGCACAGCCAAGCCCATGTCTCCTGCCCTCCGGTACAGCTGGCAGGA------ 169206
Query 6718 CCCATTCGCGACGTAGAATTGGCAGAGGGTGTGGCACGGGGGGAGCGCCATCAGAGGGAG 6777
||| || | ||| || |||| |||| ||||| || | || |||| ||||| ||
Sbjct 169205 -CCACTCACCACGGAGTTCAGGCAAAGGGCATGGCAGGGAAGTAGGGCCAGAAGAGGAAG 169147
Query 6778 ATCCTTCGGGTTCCACGCGCACATCACGATCCTTCTGTCATCAGGGTTCCGCTTCAA-GG 6836
| | || || ||||| | |||| | ||| |||||||| || ||| | | ||||| |
Sbjct 169146 AGCTTTTGGATTCCAGCCACACAGTATGATTCTTCTGTCCTC-GGGCTTGGTTTCAATTG 169088
Query 6837 TGTCGATCACGTACTGCAGCTGGTCCGCTCCCTGTCCCGAATAGTCCGCTTCGCTCCCCC 6896
| | | ||| | ||||| ||||| | || || || |||| | || || | |
Sbjct 169087 TTCCAAACACCTTTTGCAGTTGGTCTACCCCGTGACCTGAATCACCTGCATCCTTATCTT 169028
Query 6897 GATACTCCGCCCCAAAGTG--TCTCCACTGGAACCCGTAGACCGGGCCCAAGTCGCCCTC 6954
|| || ||||| || || ||||||||| | || || | || || || || || ||
Sbjct 169027 TGTATTCTGCCCCCAAATGCCTCTCCACTGAGAGCCATAACCTGGACCTAAATCCCCTTC 168968
Query 6955 CTCCCGAGATGGGAACCCCCGCTTGTCCAGAAAGTCTCGAGACCCGTGAGCGTCCCAGAT 7014
| | | | ||| ||| | |||| | |||||||| || | | || ||||||||
Sbjct 168967 TACTCCACTGGAGAATCCCAGGCTGTCTAAGAAGTCTCGGGAAGCATTGGCATCCCAGAT 168908
Query 7015 CTTCACCCCCCGGGACGA----GAGCTCCTTGGTGTTCGTGGCCCCCCTCACGAACCACA 7070
||||| ||| ||| || ||| ||| | || || | || | | |||||||
Sbjct 168907 TTTCACTCCCTTGGAAGACAGGGAGTGTCTTAGCATTTGTAGATCCTTTGATAAACCACA 168848
Query 7071 GCAGCTCCTCGACCACGCCCTTCCAGTACACACGTTTCGTCGTCAGCAGCGGAAATTCGC 7130
|| |||||| | || ||||| ||| | |||||| | || || | ||| ||||||||
Sbjct 168847 ACAACTCCTCCAAAACACCCTTTCAGAATACACGTGTTGTTGTTAACAGAGGAAATTCTT 168788
Query 7131 CCCGAAGGTTGTATCGGGCCTG 7152
| | ||| |||| | |||||
Sbjct 168787 CTCTCAGGCTGTAGTGCGCCTG 168766
>seq2546
Length=117691
Score = 91.5 bits (100), Expect = 1e-13
Identities = 167/241 (69%), Gaps = 3/241 (1%)
Strand=Plus/Plus
Query 6542 AGCCGCTCGATGTGGTTCAGGTAGATATGCGCATCCCCCAACGTATGCACCAGCTCCCCA 6601
||| |||| | ||| |||||||| ||||| ||||| ||||| ||||| || | | |
Sbjct 106010 AGCAGCTCAACGTGATTCAGGTAAATATGTGCATCTCCCAAAGTATGTACGAAGTTAGCT 106069
Query 6602 GGAACCAACCCCACGACATGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAAT-GTT 6660
|| || || || || |||| |||||| |||||||| || || | ||| | |
Sbjct 106070 GGCTTCAGGGCCGTGATGTGTGCGACCATGTAGGTGAGCAGGGCCTA-CGAGCTGGCGAT 106128
Query 6661 GAACGGCACCCCTAACCCCATGTCTCCCGATCGTTGATAGAGCTGGCAGGACAGCTCCCC 6720
||| ||||| || | |||||||||| | | || | | | |||||||||||| ||
Sbjct 106129 GAAAGGCACACCCAGGCCCATGTCTCACCACTGTGGC-ACAATGGGCAGGACAGCTTGCC 106187
Query 6721 ATTCGCGACGTAGAATTGGCAGAGGGTGTGGCACGGGGGGAGCGCCATCAGAGGGAGATC 6780
||| | |||||||| ||| |||| ||||| || | || |||| ||||| ||| |
Sbjct 106188 ATTTACCACGTAGAACCAGCAAAGGGCATGGCAGGGAGCCAGGGCCAGAAGAGGAAGAGC 106247
Query 6781 C 6781
|
Sbjct 106248 C 106248
Score = 91.5 bits (100), Expect = 1e-13
Identities = 167/241 (69%), Gaps = 3/241 (1%)
Strand=Plus/Minus
Query 34564 GGATCTCCCTCTGATGGCGCTCCCCCCGTGCCACACCCTCTGCCAATTCTACGTCGCGAA 34623
|| ||| ||||| |||| || | || ||||| |||| ||| |||||||| | ||
Sbjct 106248 GGCTCTTCCTCTTCTGGCCCTGGCTCCCTGCCATGCCCTTTGCTGGTTCTACGTGGTAAA 106189
Query 34624 TGGGGAGCTGTCCTGCCAGCTCTATCAACGATCGGGAGACATGGGGTTAGGGGTGCCGTT 34683
||| |||||||||||| | | | || | | |||||||||| | || ||||| ||
Sbjct 106188 TGGCAAGCTGTCCTGCCCATTGT-GCCACAGTGGTGAGACATGGGCCTGGGTGTGCCTTT 106130
Query 34684 CAAC-ATTGCTAGTTACGCTCTGCTCACGTACATGATCGCTCATGTCGTGGGGTTGGTTC 34742
|| | ||| | || || |||||||| |||||| |||| || || || || |
Sbjct 106129 CATCGCCAGCTCG-TAGGCCCTGCTCACCTACATGGTCGCACACATCACGGCCCTGAAGC 106071
Query 34743 CTGGGGAGCTGGTGCATACGTTGGGGGATGCGCATATCTACCTGAACCACATCGAGCGGC 34802
| | | | || ||||| ||||| ||||| ||||| |||||||| ||| | |||| ||
Sbjct 106070 CAGCTAACTTCGTACATACTTTGGGAGATGCACATATTTACCTGAATCACGTTGAGCTGC 106011
Query 34803 T 34803
|
Sbjct 106010 T 106010
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 447805917588240
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