Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ailuropoda_20melanoleuca_20[refseq_20GCF_5F000004335.2_202009-12-15] 81,467 sequences; 2,299,509,015 total letters Query= NC_029132.1 Length=140122 Score E Sequences producing significant alignments: (Bits) Value seq592 159 3e-34 seq364 116 3e-21 seq2546 91.5 1e-13 >seq592 Length=1169299 Score = 159 bits (176), Expect = 3e-34 Identities = 132/161 (82%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 6620 TGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCCCTAACCCC 6679 || || |||||||| |||||||| ||||| || || |||||||| ||||| || | ||| Sbjct 485559 TGCGCAATCATGTAGGTGAGCAGGGCGTAGCTGGCGATGTTGAAGGGCACGCCCAGGCCC 485618 Query 6680 ATGTCTCCCGATCGTTGATAGAGCTGGCAGGACAGCTCCCCATTCGCGACGTAGAATTGG 6739 ||||| ||||| | || || ||||||||||||||||| || ||| | |||||||| ||| Sbjct 485619 ATGTCCCCCGACCTCTGGTACAGCTGGCAGGACAGCTCGCCGTTCACCACGTAGAACTGG 485678 Query 6740 CAGAGGGTGTGGCACGGGGGGAGCGCCATCAGAGGGAGATC 6780 ||||||| |||||||| || || ||||||||||| ||||| Sbjct 485679 CAGAGGGCATGGCACGGAGGAAGGGCCATCAGAGGAAGATC 485719 Score = 159 bits (176), Expect = 3e-34 Identities = 132/161 (82%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 34565 GATCTCCCTCTGATGGCGCTCCCCCCGTGCCACACCCTCTGCCAATTCTACGTCGCGAAT 34624 ||||| ||||||||||| || || |||||||| |||||||||| |||||||| | ||| Sbjct 485719 GATCTTCCTCTGATGGCCCTTCCTCCGTGCCATGCCCTCTGCCAGTTCTACGTGGTGAAC 485660 Query 34625 GGGGAGCTGTCCTGCCAGCTCTATCAACGATCGGGAGACATGGGGTTAGGGGTGCCGTTC 34684 || ||||||||||||||||| || || | ||||| |||||||| | || ||||| ||| Sbjct 485659 GGCGAGCTGTCCTGCCAGCTGTACCAGAGGTCGGGGGACATGGGCCTGGGCGTGCCCTTC 485600 Query 34685 AACATTGCTAGTTACGCTCTGCTCACGTACATGATCGCTCA 34725 ||||| || || ||||| |||||||| |||||||| || || Sbjct 485599 AACATCGCCAGCTACGCCCTGCTCACCTACATGATTGCGCA 485559 Score = 105 bits (116), Expect = 6e-18 Identities = 121/160 (76%), Gaps = 2/160 (1%) Strand=Plus/Plus Query 6899 TACTCCGCCCCAAAGTGTCTCCACTGGAACCCGTAGACCGGGCCCAAGTCGCCCTCCTCC 6958 || || |||||||| || |||||||| || || || || ||||| || || || || || Sbjct 488146 TATTCTGCCCCAAAATGCCTCCACTGAAAGCCATAAACTGGGCCTAAATCCCCTTCTTCT 488205 Query 6959 CGAGATGG-GAACCCCCGCTTGTCCAGAAAGTCTCGAGACCCGTGAGCGTCCCAGATCTT 7017 | | || ||| ||| | |||||| |||||||||||||| | ||||||||||| || Sbjct 488206 CT-GCTGCAGAATCCCAGGCTGTCCAAGAAGTCTCGAGACCCATTGGCGTCCCAGATTTT 488264 Query 7018 CACCCCCCGGGACGAGAGCTCCTTGGTGTTCGTGGCCCCC 7057 ||| ||| ||| || |||||||| | ||| |||| |||| Sbjct 488265 CACTCCCTTGGAAGACAGCTCCTTAGCGTTTGTGGACCCC 488304 Score = 105 bits (116), Expect = 6e-18 Identities = 121/160 (76%), Gaps = 2/160 (1%) Strand=Plus/Minus Query 34288 GGGGGCCACGAACACCAAGGAGCTCTCGTCCCGGGGGGTGAAGATCTGGGACGCTCACGG 34347 |||| |||| ||| | |||||||| || ||| ||| ||||| ||||||||||| | || Sbjct 488304 GGGGTCCACAAACGCTAAGGAGCTGTCTTCCAAGGGAGTGAAAATCTGGGACGCCAATGG 488245 Query 34348 GTCTCGAGACTTTCTGGACAAGCGGGGGTTC-CCATCTCGGGAGGAGGGCGACTTGGGCC 34406 |||||||||||| |||||| | ||| ||| || | | || || || || || |||| Sbjct 488244 GTCTCGAGACTTCTTGGACAGCCTGGGATTCTGCAGC-AGAGAAGAAGGGGATTTAGGCC 488186 Query 34407 CGGTCTACGGGTTCCAGTGGAGACACTTTGGGGCGGAGTA 34446 | || || || || |||||||| || |||||||| || || Sbjct 488185 CAGTTTATGGCTTTCAGTGGAGGCATTTTGGGGCAGAATA 488146 >seq364 Length=1593528 Score = 116 bits (128), Expect = 3e-21 Identities = 329/502 (66%), Gaps = 15/502 (3%) Strand=Plus/Plus Query 34193 CAGGCCCGATACAACCTTCGGGGCGAATTTCCGCTGCTGACGACGAAACGTGTGTACTGG 34252 ||||| | |||| ||| | | |||||||| ||| | || || | |||||| | ||| Sbjct 168766 CAGGCGCACTACAGCCTGAGAGAAGAATTTCCTCTGTTAACAACAACACGTGTATTCTGA 168825 Query 34253 AAGGGCGTGGTCGAGGAGCTGCTGTGGTTCGTGAGGGGGGCCACGAACACCAAGGAGCTC 34312 ||||| || | |||||| || ||||||| | | || | || || | ||| ||| Sbjct 168826 AAGGGTGTTTTGGAGGAGTTGTTGTGGTTTATCAAAGGATCTACAAATGCTAAGACACTC 168885 Query 34313 ----TCGTCCCGGGGGGTGAAGATCTGGGACGCTCACGGGTCTCGAGACTTTCTGGACAA 34368 || ||| ||| ||||| |||||||| || | | || |||||||| | |||| Sbjct 168886 CCTGTCTTCCAAGGGAGTGAAAATCTGGGATGCCAATGCTTCCCGAGACTTCTTAGACAG 168945 Query 34369 GCGGGGGTTCCCATCTCGGGAGGAGGGCGACTTGGGCCCGGTCTACGGGTTCCAGTGGAG 34428 | ||| ||| | | | | || || || || || || | || || | |||||||| Sbjct 168946 CCTGGGATTCTCCAGTGGAGTAGAAGGGGATTTAGGTCCAGGTTATGGCTCTCAGTGGAG 169005 Query 34429 A--CACTTTGGGGCGGAGTATCGGGGGAGCGAAGCGGACTATTCGGGACAGGGAGCGGAC 34486 | || || ||||| || || | | || || | |||| || || || | ||| Sbjct 169006 AGGCATTTGGGGGCAGAATACAAAGATAAGGATGCAGGTGATTCAGGTCACGGGGTAGAC 169065 Query 34487 CAGCTGCAGTACGTGATCGACACC-TTGAAGCGGAACCCTGATGACAGAAGGATCGTGAT 34545 || ||||| | ||| | | || ||||| | | ||| || |||||||| ||| | | Sbjct 169066 CAACTGCAAAAGGTGTTTGGAACAATTGAAACCAAGCCC-GAGGACAGAAGAATCATACT 169124 Query 34546 GTGCGCGTGGAACCCGAAGGATCTCCCTCTGATGGCGCTCCCCCCGTGCCACACCCTCTG 34605 ||| | ||||| || || | ||| ||||| |||| || | || ||||| |||| || Sbjct 169125 GTGTGGCTGGAATCCAAAAGCTCTTCCTCTTCTGGCCCTACTTCCCTGCCATGCCCTTTG 169184 Query 34606 CCAATTCTACGTCGCGAATGGGGAGCTGTCCTGCCAGCTCTATCAACGATCGGGAGACAT 34665 || || ||| | || ||| ||||||||||| || | | | |||||||| Sbjct 169185 CCTGAACTCCGTGGTGAGTGG-------TCCTGCCAGCTGTACCGGAGGGCAGGAGACAT 169237 Query 34666 GGGGTTAGGGGTGCCGTTCAAC 34687 ||| || | ||||| |||||| Sbjct 169238 GGGCTTGGCTGTGCCTTTCAAC 169259 Score = 116 bits (128), Expect = 3e-21 Identities = 329/502 (66%), Gaps = 15/502 (3%) Strand=Plus/Minus Query 6658 GTTGAACGGCACCCCTAACCCCATGTCTCCCGATCGTTGATAGAGCTGGCAGGACAGCTC 6717 |||||| ||||| | || ||||||||||| | | | || ||||||||||| Sbjct 169259 GTTGAAAGGCACAGCCAAGCCCATGTCTCCTGCCCTCCGGTACAGCTGGCAGGA------ 169206 Query 6718 CCCATTCGCGACGTAGAATTGGCAGAGGGTGTGGCACGGGGGGAGCGCCATCAGAGGGAG 6777 ||| || | ||| || |||| |||| ||||| || | || |||| ||||| || Sbjct 169205 -CCACTCACCACGGAGTTCAGGCAAAGGGCATGGCAGGGAAGTAGGGCCAGAAGAGGAAG 169147 Query 6778 ATCCTTCGGGTTCCACGCGCACATCACGATCCTTCTGTCATCAGGGTTCCGCTTCAA-GG 6836 | | || || ||||| | |||| | ||| |||||||| || ||| | | ||||| | Sbjct 169146 AGCTTTTGGATTCCAGCCACACAGTATGATTCTTCTGTCCTC-GGGCTTGGTTTCAATTG 169088 Query 6837 TGTCGATCACGTACTGCAGCTGGTCCGCTCCCTGTCCCGAATAGTCCGCTTCGCTCCCCC 6896 | | | ||| | ||||| ||||| | || || || |||| | || || | | Sbjct 169087 TTCCAAACACCTTTTGCAGTTGGTCTACCCCGTGACCTGAATCACCTGCATCCTTATCTT 169028 Query 6897 GATACTCCGCCCCAAAGTG--TCTCCACTGGAACCCGTAGACCGGGCCCAAGTCGCCCTC 6954 || || ||||| || || ||||||||| | || || | || || || || || || Sbjct 169027 TGTATTCTGCCCCCAAATGCCTCTCCACTGAGAGCCATAACCTGGACCTAAATCCCCTTC 168968 Query 6955 CTCCCGAGATGGGAACCCCCGCTTGTCCAGAAAGTCTCGAGACCCGTGAGCGTCCCAGAT 7014 | | | | ||| ||| | |||| | |||||||| || | | || |||||||| Sbjct 168967 TACTCCACTGGAGAATCCCAGGCTGTCTAAGAAGTCTCGGGAAGCATTGGCATCCCAGAT 168908 Query 7015 CTTCACCCCCCGGGACGA----GAGCTCCTTGGTGTTCGTGGCCCCCCTCACGAACCACA 7070 ||||| ||| ||| || ||| ||| | || || | || | | ||||||| Sbjct 168907 TTTCACTCCCTTGGAAGACAGGGAGTGTCTTAGCATTTGTAGATCCTTTGATAAACCACA 168848 Query 7071 GCAGCTCCTCGACCACGCCCTTCCAGTACACACGTTTCGTCGTCAGCAGCGGAAATTCGC 7130 || |||||| | || ||||| ||| | |||||| | || || | ||| |||||||| Sbjct 168847 ACAACTCCTCCAAAACACCCTTTCAGAATACACGTGTTGTTGTTAACAGAGGAAATTCTT 168788 Query 7131 CCCGAAGGTTGTATCGGGCCTG 7152 | | ||| |||| | ||||| Sbjct 168787 CTCTCAGGCTGTAGTGCGCCTG 168766 >seq2546 Length=117691 Score = 91.5 bits (100), Expect = 1e-13 Identities = 167/241 (69%), Gaps = 3/241 (1%) Strand=Plus/Plus Query 6542 AGCCGCTCGATGTGGTTCAGGTAGATATGCGCATCCCCCAACGTATGCACCAGCTCCCCA 6601 ||| |||| | ||| |||||||| ||||| ||||| ||||| ||||| || | | | Sbjct 106010 AGCAGCTCAACGTGATTCAGGTAAATATGTGCATCTCCCAAAGTATGTACGAAGTTAGCT 106069 Query 6602 GGAACCAACCCCACGACATGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAAT-GTT 6660 || || || || || |||| |||||| |||||||| || || | ||| | | Sbjct 106070 GGCTTCAGGGCCGTGATGTGTGCGACCATGTAGGTGAGCAGGGCCTA-CGAGCTGGCGAT 106128 Query 6661 GAACGGCACCCCTAACCCCATGTCTCCCGATCGTTGATAGAGCTGGCAGGACAGCTCCCC 6720 ||| ||||| || | |||||||||| | | || | | | |||||||||||| || Sbjct 106129 GAAAGGCACACCCAGGCCCATGTCTCACCACTGTGGC-ACAATGGGCAGGACAGCTTGCC 106187 Query 6721 ATTCGCGACGTAGAATTGGCAGAGGGTGTGGCACGGGGGGAGCGCCATCAGAGGGAGATC 6780 ||| | |||||||| ||| |||| ||||| || | || |||| ||||| ||| | Sbjct 106188 ATTTACCACGTAGAACCAGCAAAGGGCATGGCAGGGAGCCAGGGCCAGAAGAGGAAGAGC 106247 Query 6781 C 6781 | Sbjct 106248 C 106248 Score = 91.5 bits (100), Expect = 1e-13 Identities = 167/241 (69%), Gaps = 3/241 (1%) Strand=Plus/Minus Query 34564 GGATCTCCCTCTGATGGCGCTCCCCCCGTGCCACACCCTCTGCCAATTCTACGTCGCGAA 34623 || ||| ||||| |||| || | || ||||| |||| ||| |||||||| | || Sbjct 106248 GGCTCTTCCTCTTCTGGCCCTGGCTCCCTGCCATGCCCTTTGCTGGTTCTACGTGGTAAA 106189 Query 34624 TGGGGAGCTGTCCTGCCAGCTCTATCAACGATCGGGAGACATGGGGTTAGGGGTGCCGTT 34683 ||| |||||||||||| | | | || | | |||||||||| | || ||||| || Sbjct 106188 TGGCAAGCTGTCCTGCCCATTGT-GCCACAGTGGTGAGACATGGGCCTGGGTGTGCCTTT 106130 Query 34684 CAAC-ATTGCTAGTTACGCTCTGCTCACGTACATGATCGCTCATGTCGTGGGGTTGGTTC 34742 || | ||| | || || |||||||| |||||| |||| || || || || | Sbjct 106129 CATCGCCAGCTCG-TAGGCCCTGCTCACCTACATGGTCGCACACATCACGGCCCTGAAGC 106071 Query 34743 CTGGGGAGCTGGTGCATACGTTGGGGGATGCGCATATCTACCTGAACCACATCGAGCGGC 34802 | | | | || ||||| ||||| ||||| ||||| |||||||| ||| | |||| || Sbjct 106070 CAGCTAACTTCGTACATACTTTGGGAGATGCACATATTTACCTGAATCACGTTGAGCTGC 106011 Query 34803 T 34803 | Sbjct 106010 T 106010 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 447805917588240