Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ailuropoda_20melanoleuca_20[refseq_20GCF_5F000004335.2_202009-12-15] 81,467 sequences; 2,299,509,015 total letters Query= NC_029255.1 Length=129563 Score E Sequences producing significant alignments: (Bits) Value seq192 185 7e-42 seq203 127 2e-24 seq341 104 2e-17 seq592 84.2 2e-11 >seq192 Length=2194266 Score = 185 bits (204), Expect = 7e-42 Identities = 188/245 (77%), Gaps = 0/245 (0%) Strand=Plus/Minus Query 1281 GAAGTTGTCATTGTAACATGGCAAAAAGTTAAAGCATCAAGCCCAGAAAACATGGCCACT 1340 ||||| | ||||| |||||||| ||||| || | |||||||||||||||| ||| Sbjct 894172 GAAGTCTTGATTGTGACATGGCAGAAAGTCAAGCCCGTTAGCCCAGAAAACATGGTCACC 894113 Query 1341 TTTAGTAATGACCACGGGGTTGTTGTTCAGCCAGCATACAAAGATAAAATGAACATAACT 1400 || || || |||| ||||| || || ||||| || ||||| || || || || || || Sbjct 894112 TTCAGCAAGAACCATGGGGTCGTGGTCCAGCCTGCCTACAAGGACAAGATAAATATCACC 894053 Query 1401 GAGCTTGGACTACAAAACACAACTATAACCTTCTGGAACACAACATTGGATGATGAAGGG 1460 |||| | ||| | ||| |||| || |||||||||||||| || |||| ||||||||| Sbjct 894052 CAGCTGGAACTCAAGAACTCAACCATTACCTTCTGGAACACCACCCTGGAGGATGAAGGG 893993 Query 1461 TGCTACAAGTGTTTATTTAACACTTTTGGATCTGGGAAGATGTCAGGAATAGGGTGTCTA 1520 || |||||||| | || || |||||||| ||||||||||| ||||||| || || || Sbjct 893992 TGTTACAAGTGCCTCTTCAATACTTTTGGTTCTGGGAAGATCTCAGGAACAGCCTGCCTC 893933 Query 1521 ACCCT 1525 ||||| Sbjct 893932 ACCCT 893928 >seq203 Length=2156288 Score = 127 bits (140), Expect = 2e-24 Identities = 112/140 (80%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 3245 GTTGTTGATGAGCTCTTCCGAGATGGGGTAAACTGGGGGCGCATTGTTGCTTTCTTTGAG 3304 || || || ||||||||| | |||||||| ||||||||| | ||||| || ||||||||| Sbjct 1930942 GTGGTGGAGGAGCTCTTCAGGGATGGGGTGAACTGGGGGAGGATTGTGGCCTTCTTTGAG 1930883 Query 3305 TTTGGTGGTGTTATGTGTGTGGAAAGCGTCAATAGAGGCATACCCTCCCTCGTTGACAAC 3364 || ||||| || ||||||||||| |||||||| | | || | |||| || |||||| Sbjct 1930882 TTCGGTGGGGTCATGTGTGTGGAGAGCGTCAACCGGGAGATGTCGCCCCTGGTGGACAAC 1930823 Query 3365 ATTGCCGCGTGGATGACAGA 3384 |||||| ||||||||| || Sbjct 1930822 ATTGCCCTGTGGATGACTGA 1930803 >seq341 Length=1645601 Score = 104 bits (114), Expect = 2e-17 Identities = 278/421 (66%), Gaps = 18/421 (4%) Strand=Plus/Minus Query 2270 ATGTTGTAATTATGGGAAGAAAGACATGGTTTTCACTTCCCATTAAAAGCA--GGCCTTT 2327 || |||| |||||| || |||||||| || || | |||| || ||| | | ||||| Sbjct 1120999 ATTTTGTGATTATGCATAGGAAGACATGATTCTCTCCTCCC--TAGAAGAATCGACCTTT 1120942 Query 2328 GAACAACAGAATAAATCTGGTTCTCAGTAGACACCTTAAAGAGCCACCACGTGGGGCTCA 2387 || ||||||| ||| | ||||| |||| | || || || || | | || ||||| Sbjct 1120941 AAAGGACAGAATTAATTTAGTTCT---TAGAGAACTCAAGGAACCTCTGCAAGGAGCTCA 1120885 Query 2388 CTTTGTTGCAAAAAGTATAGATCACGCTCTGGAAATTATAATAGGACCAGAATTAAAAGA 2447 || | | |||||| | ||| || | || | || | | |||||||||| | | Sbjct 1120884 TTTCCTAACCAAAAGTCTGGATGGTGCCTTAAAACTGATTAAA---CCAGAATTAACAAA 1120828 Query 2448 CAGGGTGGATAAGATTTGGATAATTGGTGGAAGATCTGTCTATGAGGAGAGCATTACAAG 2507 | ||||| ||| |||||||| | || || || | ||| ||| |||| || | || Sbjct 1120827 GAAAGTGGACAAGGTTTGGATAGTGGGAGGCAGTTTTGTTTATAAGGAAGCCACGAAAAA 1120768 Query 2508 ATCTTGCAAACAGATGCTGTTTTTAACAAGGATTCTGCAAAAATTTGAATGTGATACAT- 2566 | || | | | || ||| | |||||||| ||| | |||||||| || | |||| Sbjct 1120767 GCCAAGCCATCTCAAACTATTTGTGACAAGGATCATGC-AGAATTTGAAAGTAACACATT 1120709 Query 2567 ------ACTTCCCAGAAATTAATCTTACCAAATACAAACAACTTACTGAATTTCCAGGTG 2620 | || ||||||| | || | ||||| || | ||| | |||| |||| ||| Sbjct 1120708 TTTTCCAGTTTCCAGAAACTGATTTGGGAAAATATAAGCTTCTTCCAGAATATCCAAGTG 1120649 Query 2621 TTCCCTCTGCCGTGCAAGAAGAAAATGGAATTAGATACAAATTTGAGATATATGaaaaaa 2680 ||| |||| || ||||| |||| || | || || |||| ||| ||||| |||| | Sbjct 1120648 TTCTTTCTGGTGTCCAAGAGGAAAGAGGTAGTAAGTAGAAATCTGAAGTATATAAAAAGA 1120589 Query 2681 a 2681 | Sbjct 1120588 A 1120588 >seq592 Length=1169299 Score = 84.2 bits (92), Expect = 2e-11 Identities = 97/131 (74%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 118534 AGCCCTGTCAGGTGAGCAATCATGTATGTCAACAAACTGTAGCTGGCTACATTAAAAGGA 118593 || || || | ||| ||||||||||| || | || ||||||||| | || || || Sbjct 485547 AGGCCGGTGATGTGCGCAATCATGTAGGTGAGCAGGGCGTAGCTGGCGATGTTGAAGGGC 485606 Query 118594 ACACCCAGACCCATGTCTGCTGATCTCTGGTACAATTGGCAAGAGAGCTCCCCGTTTGCA 118653 || ||||| |||||||| | || |||||||||| ||||| || ||||| ||||| | Sbjct 485607 ACGCCCAGGCCCATGTCCCCCGACCTCTGGTACAGCTGGCAGGACAGCTCGCCGTTCACC 485666 Query 118654 ACATAAAACTG 118664 || || ||||| Sbjct 485667 ACGTAGAACTG 485677 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 414065274663388