Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ailuropoda_20melanoleuca_20[refseq_20GCF_5F000004335.2_202009-12-15]
81,467 sequences; 2,299,509,015 total letters
Query= NC_029255.1
Length=129563
Score E
Sequences producing significant alignments: (Bits) Value
seq192 185 7e-42
seq203 127 2e-24
seq341 104 2e-17
seq592 84.2 2e-11
>seq192
Length=2194266
Score = 185 bits (204), Expect = 7e-42
Identities = 188/245 (77%), Gaps = 0/245 (0%)
Strand=Plus/Minus
Query 1281 GAAGTTGTCATTGTAACATGGCAAAAAGTTAAAGCATCAAGCCCAGAAAACATGGCCACT 1340
||||| | ||||| |||||||| ||||| || | |||||||||||||||| |||
Sbjct 894172 GAAGTCTTGATTGTGACATGGCAGAAAGTCAAGCCCGTTAGCCCAGAAAACATGGTCACC 894113
Query 1341 TTTAGTAATGACCACGGGGTTGTTGTTCAGCCAGCATACAAAGATAAAATGAACATAACT 1400
|| || || |||| ||||| || || ||||| || ||||| || || || || || ||
Sbjct 894112 TTCAGCAAGAACCATGGGGTCGTGGTCCAGCCTGCCTACAAGGACAAGATAAATATCACC 894053
Query 1401 GAGCTTGGACTACAAAACACAACTATAACCTTCTGGAACACAACATTGGATGATGAAGGG 1460
|||| | ||| | ||| |||| || |||||||||||||| || |||| |||||||||
Sbjct 894052 CAGCTGGAACTCAAGAACTCAACCATTACCTTCTGGAACACCACCCTGGAGGATGAAGGG 893993
Query 1461 TGCTACAAGTGTTTATTTAACACTTTTGGATCTGGGAAGATGTCAGGAATAGGGTGTCTA 1520
|| |||||||| | || || |||||||| ||||||||||| ||||||| || || ||
Sbjct 893992 TGTTACAAGTGCCTCTTCAATACTTTTGGTTCTGGGAAGATCTCAGGAACAGCCTGCCTC 893933
Query 1521 ACCCT 1525
|||||
Sbjct 893932 ACCCT 893928
>seq203
Length=2156288
Score = 127 bits (140), Expect = 2e-24
Identities = 112/140 (80%), Gaps = 0/140 (0%)
Strand=Plus/Minus
Query 3245 GTTGTTGATGAGCTCTTCCGAGATGGGGTAAACTGGGGGCGCATTGTTGCTTTCTTTGAG 3304
|| || || ||||||||| | |||||||| ||||||||| | ||||| || |||||||||
Sbjct 1930942 GTGGTGGAGGAGCTCTTCAGGGATGGGGTGAACTGGGGGAGGATTGTGGCCTTCTTTGAG 1930883
Query 3305 TTTGGTGGTGTTATGTGTGTGGAAAGCGTCAATAGAGGCATACCCTCCCTCGTTGACAAC 3364
|| ||||| || ||||||||||| |||||||| | | || | |||| || ||||||
Sbjct 1930882 TTCGGTGGGGTCATGTGTGTGGAGAGCGTCAACCGGGAGATGTCGCCCCTGGTGGACAAC 1930823
Query 3365 ATTGCCGCGTGGATGACAGA 3384
|||||| ||||||||| ||
Sbjct 1930822 ATTGCCCTGTGGATGACTGA 1930803
>seq341
Length=1645601
Score = 104 bits (114), Expect = 2e-17
Identities = 278/421 (66%), Gaps = 18/421 (4%)
Strand=Plus/Minus
Query 2270 ATGTTGTAATTATGGGAAGAAAGACATGGTTTTCACTTCCCATTAAAAGCA--GGCCTTT 2327
|| |||| |||||| || |||||||| || || | |||| || ||| | | |||||
Sbjct 1120999 ATTTTGTGATTATGCATAGGAAGACATGATTCTCTCCTCCC--TAGAAGAATCGACCTTT 1120942
Query 2328 GAACAACAGAATAAATCTGGTTCTCAGTAGACACCTTAAAGAGCCACCACGTGGGGCTCA 2387
|| ||||||| ||| | ||||| |||| | || || || || | | || |||||
Sbjct 1120941 AAAGGACAGAATTAATTTAGTTCT---TAGAGAACTCAAGGAACCTCTGCAAGGAGCTCA 1120885
Query 2388 CTTTGTTGCAAAAAGTATAGATCACGCTCTGGAAATTATAATAGGACCAGAATTAAAAGA 2447
|| | | |||||| | ||| || | || | || | | |||||||||| | |
Sbjct 1120884 TTTCCTAACCAAAAGTCTGGATGGTGCCTTAAAACTGATTAAA---CCAGAATTAACAAA 1120828
Query 2448 CAGGGTGGATAAGATTTGGATAATTGGTGGAAGATCTGTCTATGAGGAGAGCATTACAAG 2507
| ||||| ||| |||||||| | || || || | ||| ||| |||| || | ||
Sbjct 1120827 GAAAGTGGACAAGGTTTGGATAGTGGGAGGCAGTTTTGTTTATAAGGAAGCCACGAAAAA 1120768
Query 2508 ATCTTGCAAACAGATGCTGTTTTTAACAAGGATTCTGCAAAAATTTGAATGTGATACAT- 2566
| || | | | || ||| | |||||||| ||| | |||||||| || | ||||
Sbjct 1120767 GCCAAGCCATCTCAAACTATTTGTGACAAGGATCATGC-AGAATTTGAAAGTAACACATT 1120709
Query 2567 ------ACTTCCCAGAAATTAATCTTACCAAATACAAACAACTTACTGAATTTCCAGGTG 2620
| || ||||||| | || | ||||| || | ||| | |||| |||| |||
Sbjct 1120708 TTTTCCAGTTTCCAGAAACTGATTTGGGAAAATATAAGCTTCTTCCAGAATATCCAAGTG 1120649
Query 2621 TTCCCTCTGCCGTGCAAGAAGAAAATGGAATTAGATACAAATTTGAGATATATGaaaaaa 2680
||| |||| || ||||| |||| || | || || |||| ||| ||||| |||| |
Sbjct 1120648 TTCTTTCTGGTGTCCAAGAGGAAAGAGGTAGTAAGTAGAAATCTGAAGTATATAAAAAGA 1120589
Query 2681 a 2681
|
Sbjct 1120588 A 1120588
>seq592
Length=1169299
Score = 84.2 bits (92), Expect = 2e-11
Identities = 97/131 (74%), Gaps = 0/131 (0%)
Strand=Plus/Plus
Query 118534 AGCCCTGTCAGGTGAGCAATCATGTATGTCAACAAACTGTAGCTGGCTACATTAAAAGGA 118593
|| || || | ||| ||||||||||| || | || ||||||||| | || || ||
Sbjct 485547 AGGCCGGTGATGTGCGCAATCATGTAGGTGAGCAGGGCGTAGCTGGCGATGTTGAAGGGC 485606
Query 118594 ACACCCAGACCCATGTCTGCTGATCTCTGGTACAATTGGCAAGAGAGCTCCCCGTTTGCA 118653
|| ||||| |||||||| | || |||||||||| ||||| || ||||| ||||| |
Sbjct 485607 ACGCCCAGGCCCATGTCCCCCGACCTCTGGTACAGCTGGCAGGACAGCTCGCCGTTCACC 485666
Query 118654 ACATAAAACTG 118664
|| || |||||
Sbjct 485667 ACGTAGAACTG 485677
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 414065274663388
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |