Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ailuropoda_20melanoleuca_20[refseq_20GCF_5F000004335.2_202009-12-15]
81,467 sequences; 2,299,509,015 total letters
Query= NC_029692.1
Length=362276
Score E
Sequences producing significant alignments: (Bits) Value
seq456 167 5e-36
seq375 131 4e-25
seq17 122 2e-22
seq861 114 3e-20
seq69 113 1e-19
seq219 95.1 3e-14
seq1347 87.8 4e-12
seq342 84.2 5e-11
>seq456
Length=1409724
Score = 167 bits (184), Expect = 5e-36
Identities = 166/215 (77%), Gaps = 0/215 (0%)
Strand=Plus/Minus
Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962
||||| ||||| || || |||||||| |||||||| ||||| | ||| || | ||||||
Sbjct 1113394 AGGACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCT 1113335
Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022
||||||||||||||||| ||||| || | || |||||||| || | || || || ||
Sbjct 1113334 TCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGGGGGATGCCCTCTTTATCT 1113275
Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082
|||||||| ||||| || |||||||||||| | || ||||| || ||||| |||
Sbjct 1113274 TGGATCTTGGCCTTCACATTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTC 1113215
Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117
|| || || || ||||| || || | |||||||||
Sbjct 1113214 TTGCCAGTCAGGGTCTTCACGAAGATCTGCATTTT 1113180
Score = 161 bits (178), Expect = 2e-34
Identities = 163/212 (77%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962
||||| ||||| || || |||||||| |||||||| ||||| | ||| || | ||||||
Sbjct 1113622 AGGACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCT 1113563
Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022
||||||||||||||||| ||||| || | || |||||||| || | || || || ||
Sbjct 1113562 TCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGGGGGATGCCCTCTTTATCT 1113503
Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082
|||||||| ||||| || |||||||||||| | || ||||| || ||||| |||
Sbjct 1113502 TGGATCTTGGCCTTCACATTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTC 1113443
Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114
|| || || || ||||| || || | ||||||
Sbjct 1113442 TTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 1113411
Score = 161 bits (178), Expect = 2e-34
Identities = 163/212 (77%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962
||||| ||||| || || |||||||| |||||||| ||||| | ||| || | ||||||
Sbjct 1113850 AGGACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCT 1113791
Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022
||||||||||||||||| ||||| || | || |||||||| || | || || || ||
Sbjct 1113790 TCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGGGGGATGCCCTCTTTATCT 1113731
Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082
|||||||| ||||| || |||||||||||| | || ||||| || ||||| |||
Sbjct 1113730 TGGATCTTGGCCTTCACATTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTC 1113671
Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114
|| || || || ||||| || || | ||||||
Sbjct 1113670 TTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 1113639
Score = 161 bits (178), Expect = 2e-34
Identities = 163/212 (77%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962
||||| ||||| || || |||||||| |||||||| ||||| | ||| || | ||||||
Sbjct 1114078 AGGACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCT 1114019
Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022
||||||||||||||||| ||||| || | || |||||||| || | || || || ||
Sbjct 1114018 TCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGGGGGATGCCCTCTTTATCT 1113959
Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082
|||||||| ||||| || |||||||||||| | || ||||| || ||||| |||
Sbjct 1113958 TGGATCTTGGCCTTCACATTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTC 1113899
Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114
|| || || || ||||| || || | ||||||
Sbjct 1113898 TTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 1113867
Score = 161 bits (178), Expect = 2e-34
Identities = 163/212 (77%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962
|| || ||||| ||||| |||||||| |||||||| ||||| | ||| || | ||||||
Sbjct 1114306 AGAACCAGGTGGAGAGTCGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCT 1114247
Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022
||||||||||||||||| ||||| || | || |||||||| || | || || || ||
Sbjct 1114246 TCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGGGGGATGCCCTCTTTATCT 1114187
Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082
|||||||| ||||| || |||||||||||| | || ||||| || ||||| |||
Sbjct 1114186 TGGATCTTGGCCTTCACATTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTC 1114127
Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114
|| || || || ||||| || || | ||||||
Sbjct 1114126 TTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 1114095
>seq375
Length=1568959
Score = 131 bits (144), Expect = 4e-25
Identities = 156/212 (74%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962
|| || ||||| ||||| ||| |||| ||||| | ||||| | ||| | | ||||||
Sbjct 1493371 AGAACCAGGTGCAGAGTTGACCCTTTCTGGATAATGTAATCAGAAAGACTGATGCCATCT 1493312
Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022
||||||||||||||| | ||||| || | || |||||||| || | ||||| || ||
Sbjct 1493311 TCCAGCTGCTTGCCTACAAAGATGAGCCTCTGCTGGTCAGGGGGGATGCCTTCTTTATCT 1493252
Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082
|||||||| ||||| || |||||||| | | ||| ||||| |||| ||| |||
Sbjct 1493251 TGGATCTTAGCCTTCACATTCCTGATGGTGTTACTGGGTTCCACCTCCAGAGAGATAGTC 1493192
Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114
|| | | || ||||| ||||| | ||||||
Sbjct 1493191 TTGCTGATCAGGGTCTTCACAAAGATCTGCAT 1493160
>seq17
Length=4663558
Score = 122 bits (134), Expect = 2e-22
Identities = 164/225 (73%), Gaps = 15/225 (7%)
Strand=Plus/Plus
Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962
||||| | ||| |||||||| || || |||||||| || || | ||||| | ||||||
Sbjct 4172528 AGGACCAAGTGCAGAGTGGATTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCT 4172587
Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAA----CTCCT--TCC 211016
|||||||| || || || ||||| | | || ||||| || || | ||||| |||
Sbjct 4172588 TCCAGCTGTTTCCCCGCAAAGATCAACCTCTGCTGGTCGGGGGGGATGCCCTCCTTGTCC 4172647
Query 211017 ---TTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTT---TCAACCTCG 211070
|||||||||||||| || ||||| ||||||||||| |||| || |||||
Sbjct 4172648 TGTTTGTCCTGGATCTTCGCCTTGACGTTCTCGATGGTGTC---GCTTGGCTCCACCTCC 4172704
Query 211071 AGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATT 211115
|| ||||| ||||| || || | ||||| || || | |||||||
Sbjct 4172705 AGGGTGATGGTCTTACCTGTCAAGGTCTTCACGAAGATCTGCATT 4172749
>seq861
Length=883633
Score = 114 bits (126), Expect = 3e-20
Identities = 141/193 (73%), Gaps = 0/193 (0%)
Strand=Plus/Minus
Query 210925 CTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGA 210984
|||| |||||||| || || | ||| | ||||||||||||||||||||||| ||||
Sbjct 499600 CTTTCTGGATGTTGTAGTCAGAAAGAATGTGGCCATCTTCCAGCTGCTTGCCTGCAAAGA 499541
Query 210985 TAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTT 211044
| || | || ||| |||| || | ||||| || |||||| |||| ||||| || |
Sbjct 499540 TGAGCCTCTGCTGGCCAGGGGGGATGCCTTCTTTATCCTGGGTCTTGGCCTTCACATTCT 499481
Query 211045 CGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAA 211104
||||| || | ||| | ||| || ||||| ||||| || || || ||||| || |
Sbjct 499480 TCATGGTATCGCTGGGTTCCAACTCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGA 499421
Query 211105 ACACCTGCATTTT 211117
| ||||| |||||
Sbjct 499420 AGACCTGTATTTT 499408
>seq69
Length=3213852
Score = 113 bits (124), Expect = 1e-19
Identities = 161/224 (72%), Gaps = 17/224 (8%)
Strand=Plus/Minus
Query 210895 GAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCC 210954
||||||| | ||||||||||||||| |||| ||| | ||||| | || || || |
Sbjct 2841982 GAAGTCTCAACACAAGGTGAAGAGTGAACTCCTTTAGAATGTTGTGGTC----AGAGTAC 2841927
Query 210955 TTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGT----TGGTCAGGAGGAACT 211010
||||| |||||| |||||||| | |||||| || ||| || |||||||||| |
Sbjct 2841926 GTCCATATTCCAGTTGCTTGCCAGTGAAGATCAG----TGTCCACTGATCAGGAGGAATT 2841871
Query 211011 CCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCG 211070
|||| ||| |||||||||| | | ||||| || || || ||| |||||||| |
Sbjct 2841870 CCTTTCTTATCCTGGATCT----CATTATATTTTCTATTGTATCTGAGGATTCAACCTTG 2841815
Query 211071 AGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114
||| |||| ||||| || | || | || |||| | ||||||
Sbjct 2841814 AGAATGATGGTCTTCTCCATAAG-GGCTGCCCAAAAATCTGCAT 2841772
>seq219
Length=2096153
Score = 95.1 bits (104), Expect = 3e-14
Identities = 134/186 (72%), Gaps = 2/186 (1%)
Strand=Plus/Minus
Query 210895 GAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGC-AAGGGTC 210953
||||||| | ||| |||||||||||||| ||||| ||||| | || | || ||
Sbjct 573086 GAAGTCTCAACCAAAGATGAAGAGTGGACTCCTTTTGAATGTTGTG-TCAGATAAAAGTA 573028
Query 210954 CTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCT 211013
| || ||||| | |||| ||| ||||||| || | ||||| ||||| |||| ||||
Sbjct 573027 CGTCTGTCTTCTCGTTGCTCGCCAACGAAGATCAGTCTCTGTTGATCAGGGGGAATTCCT 572968
Query 211014 TCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGA 211073
||||||| ||||||||| || | |||| | || || ||| |||| ||| ||||
Sbjct 572967 TCCTTGTTCTGGATCTTGGCCTTTGCAATTTCTGTTGTATCTGAGGGTTCATCCTGGAGA 572908
Query 211074 GTGATC 211079
||| ||
Sbjct 572907 GTGGTC 572902
>seq1347
Length=544027
Score = 87.8 bits (96), Expect = 4e-12
Identities = 140/199 (70%), Gaps = 3/199 (2%)
Strand=Plus/Plus
Query 210921 GACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCTGCG 210980
|||||||| | |||| | || || | ||| || |||||||| |||| |||||||
Sbjct 219222 GACTCTTTCTAGATGCTGTAGTCAGAAAGAGTGGGGCCATCTTCTAGCTCGCTGCCTGCA 219281
Query 210981 AAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTT--GTTTCA 211038
||||| || | || |||||||| | | |||| || ||||||||||| | |||||
Sbjct 219282 AAGATGAGCCTCTGCTGGTCAGGGGAGATGACTTCTTTATCCTGGATCTTATAGCTTTCA 219341
Query 211039 CGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTCT 211098
| ||||| || |||||| | | ||||| ||||| || |||| || || | ||||
Sbjct 219342 CATTTTCAATAGTGTCACTGTGCCCCACCTCCAGAGTAATGATCTTGCCAGTCAAGGTCT 219401
Query 211099 TTACAAACACCTGCATTTT 211117
| | || | ||||||||
Sbjct 219402 TCA-GAAGATTTGCATTTT 219419
>seq342
Length=1642288
Score = 84.2 bits (92), Expect = 5e-11
Identities = 136/193 (70%), Gaps = 2/193 (1%)
Strand=Plus/Minus
Query 210896 AAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCT 210955
|||||| | || || || ||||||| ||| ||| | | ||| || ||| | | |
Sbjct 1431357 AAGTCTCAACACGAGATGCAGAGTGGTCTCCTTTGGAACGTTGTAGGGGACAAAG-TACG 1431299
Query 210956 TCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTC 211015
||| ||||||| ||||||| |||||| || || || || ||||||| ||||||
Sbjct 1431298 CCCACCTTCCAGTTGCTTGCTCCTGAAGATCAGTTCCTGCTGATC-GGAGGAATTCCTTC 1431240
Query 211016 CTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGT 211075
|| |||||||| || | || | ||| || || | ||| |||||||||||| ||
Sbjct 1431239 CTCATCCTGGATTTTGCCCCTTACATCTTCTATTGTATTTGAGGGTTCAACCTCGAGGGT 1431180
Query 211076 GATCGTCTTTCCC 211088
||| |||||||||
Sbjct 1431179 GATGGTCTTTCCC 1431167
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1157942081851455
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