Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ailuropoda_20melanoleuca_20[refseq_20GCF_5F000004335.2_202009-12-15] 81,467 sequences; 2,299,509,015 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq456 167 5e-36 seq375 131 4e-25 seq17 122 2e-22 seq861 114 3e-20 seq69 113 1e-19 seq219 95.1 3e-14 seq1347 87.8 4e-12 seq342 84.2 5e-11 >seq456 Length=1409724 Score = 167 bits (184), Expect = 5e-36 Identities = 166/215 (77%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||| ||||| || || |||||||| |||||||| ||||| | ||| || | |||||| Sbjct 1113394 AGGACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCT 1113335 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 ||||||||||||||||| ||||| || | || |||||||| || | || || || || Sbjct 1113334 TCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGGGGGATGCCCTCTTTATCT 1113275 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| ||||| || |||||||||||| | || ||||| || ||||| ||| Sbjct 1113274 TGGATCTTGGCCTTCACATTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTC 1113215 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117 || || || || ||||| || || | ||||||||| Sbjct 1113214 TTGCCAGTCAGGGTCTTCACGAAGATCTGCATTTT 1113180 Score = 161 bits (178), Expect = 2e-34 Identities = 163/212 (77%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||| ||||| || || |||||||| |||||||| ||||| | ||| || | |||||| Sbjct 1113622 AGGACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCT 1113563 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 ||||||||||||||||| ||||| || | || |||||||| || | || || || || Sbjct 1113562 TCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGGGGGATGCCCTCTTTATCT 1113503 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| ||||| || |||||||||||| | || ||||| || ||||| ||| Sbjct 1113502 TGGATCTTGGCCTTCACATTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTC 1113443 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || || || ||||| || || | |||||| Sbjct 1113442 TTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 1113411 Score = 161 bits (178), Expect = 2e-34 Identities = 163/212 (77%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||| ||||| || || |||||||| |||||||| ||||| | ||| || | |||||| Sbjct 1113850 AGGACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCT 1113791 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 ||||||||||||||||| ||||| || | || |||||||| || | || || || || Sbjct 1113790 TCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGGGGGATGCCCTCTTTATCT 1113731 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| ||||| || |||||||||||| | || ||||| || ||||| ||| Sbjct 1113730 TGGATCTTGGCCTTCACATTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTC 1113671 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || || || ||||| || || | |||||| Sbjct 1113670 TTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 1113639 Score = 161 bits (178), Expect = 2e-34 Identities = 163/212 (77%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||| ||||| || || |||||||| |||||||| ||||| | ||| || | |||||| Sbjct 1114078 AGGACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCT 1114019 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 ||||||||||||||||| ||||| || | || |||||||| || | || || || || Sbjct 1114018 TCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGGGGGATGCCCTCTTTATCT 1113959 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| ||||| || |||||||||||| | || ||||| || ||||| ||| Sbjct 1113958 TGGATCTTGGCCTTCACATTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTC 1113899 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || || || ||||| || || | |||||| Sbjct 1113898 TTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 1113867 Score = 161 bits (178), Expect = 2e-34 Identities = 163/212 (77%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || ||||| ||||| |||||||| |||||||| ||||| | ||| || | |||||| Sbjct 1114306 AGAACCAGGTGGAGAGTCGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCT 1114247 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 ||||||||||||||||| ||||| || | || |||||||| || | || || || || Sbjct 1114246 TCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGGGGGATGCCCTCTTTATCT 1114187 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| ||||| || |||||||||||| | || ||||| || ||||| ||| Sbjct 1114186 TGGATCTTGGCCTTCACATTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTC 1114127 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || || || ||||| || || | |||||| Sbjct 1114126 TTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 1114095 >seq375 Length=1568959 Score = 131 bits (144), Expect = 4e-25 Identities = 156/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || ||||| ||||| ||| |||| ||||| | ||||| | ||| | | |||||| Sbjct 1493371 AGAACCAGGTGCAGAGTTGACCCTTTCTGGATAATGTAATCAGAAAGACTGATGCCATCT 1493312 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 ||||||||||||||| | ||||| || | || |||||||| || | ||||| || || Sbjct 1493311 TCCAGCTGCTTGCCTACAAAGATGAGCCTCTGCTGGTCAGGGGGGATGCCTTCTTTATCT 1493252 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| ||||| || |||||||| | | ||| ||||| |||| ||| ||| Sbjct 1493251 TGGATCTTAGCCTTCACATTCCTGATGGTGTTACTGGGTTCCACCTCCAGAGAGATAGTC 1493192 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || | | || ||||| ||||| | |||||| Sbjct 1493191 TTGCTGATCAGGGTCTTCACAAAGATCTGCAT 1493160 >seq17 Length=4663558 Score = 122 bits (134), Expect = 2e-22 Identities = 164/225 (73%), Gaps = 15/225 (7%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||| | ||| |||||||| || || |||||||| || || | ||||| | |||||| Sbjct 4172528 AGGACCAAGTGCAGAGTGGATTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCT 4172587 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAA----CTCCT--TCC 211016 |||||||| || || || ||||| | | || ||||| || || | ||||| ||| Sbjct 4172588 TCCAGCTGTTTCCCCGCAAAGATCAACCTCTGCTGGTCGGGGGGGATGCCCTCCTTGTCC 4172647 Query 211017 ---TTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTT---TCAACCTCG 211070 |||||||||||||| || ||||| ||||||||||| |||| || ||||| Sbjct 4172648 TGTTTGTCCTGGATCTTCGCCTTGACGTTCTCGATGGTGTC---GCTTGGCTCCACCTCC 4172704 Query 211071 AGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATT 211115 || ||||| ||||| || || | ||||| || || | ||||||| Sbjct 4172705 AGGGTGATGGTCTTACCTGTCAAGGTCTTCACGAAGATCTGCATT 4172749 >seq861 Length=883633 Score = 114 bits (126), Expect = 3e-20 Identities = 141/193 (73%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 210925 CTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGA 210984 |||| |||||||| || || | ||| | ||||||||||||||||||||||| |||| Sbjct 499600 CTTTCTGGATGTTGTAGTCAGAAAGAATGTGGCCATCTTCCAGCTGCTTGCCTGCAAAGA 499541 Query 210985 TAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTT 211044 | || | || ||| |||| || | ||||| || |||||| |||| ||||| || | Sbjct 499540 TGAGCCTCTGCTGGCCAGGGGGGATGCCTTCTTTATCCTGGGTCTTGGCCTTCACATTCT 499481 Query 211045 CGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAA 211104 ||||| || | ||| | ||| || ||||| ||||| || || || ||||| || | Sbjct 499480 TCATGGTATCGCTGGGTTCCAACTCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGA 499421 Query 211105 ACACCTGCATTTT 211117 | ||||| ||||| Sbjct 499420 AGACCTGTATTTT 499408 >seq69 Length=3213852 Score = 113 bits (124), Expect = 1e-19 Identities = 161/224 (72%), Gaps = 17/224 (8%) Strand=Plus/Minus Query 210895 GAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCC 210954 ||||||| | ||||||||||||||| |||| ||| | ||||| | || || || | Sbjct 2841982 GAAGTCTCAACACAAGGTGAAGAGTGAACTCCTTTAGAATGTTGTGGTC----AGAGTAC 2841927 Query 210955 TTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGT----TGGTCAGGAGGAACT 211010 ||||| |||||| |||||||| | |||||| || ||| || |||||||||| | Sbjct 2841926 GTCCATATTCCAGTTGCTTGCCAGTGAAGATCAG----TGTCCACTGATCAGGAGGAATT 2841871 Query 211011 CCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCG 211070 |||| ||| |||||||||| | | ||||| || || || ||| |||||||| | Sbjct 2841870 CCTTTCTTATCCTGGATCT----CATTATATTTTCTATTGTATCTGAGGATTCAACCTTG 2841815 Query 211071 AGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||| |||| ||||| || | || | || |||| | |||||| Sbjct 2841814 AGAATGATGGTCTTCTCCATAAG-GGCTGCCCAAAAATCTGCAT 2841772 >seq219 Length=2096153 Score = 95.1 bits (104), Expect = 3e-14 Identities = 134/186 (72%), Gaps = 2/186 (1%) Strand=Plus/Minus Query 210895 GAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGC-AAGGGTC 210953 ||||||| | ||| |||||||||||||| ||||| ||||| | || | || || Sbjct 573086 GAAGTCTCAACCAAAGATGAAGAGTGGACTCCTTTTGAATGTTGTG-TCAGATAAAAGTA 573028 Query 210954 CTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCT 211013 | || ||||| | |||| ||| ||||||| || | ||||| ||||| |||| |||| Sbjct 573027 CGTCTGTCTTCTCGTTGCTCGCCAACGAAGATCAGTCTCTGTTGATCAGGGGGAATTCCT 572968 Query 211014 TCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGA 211073 ||||||| ||||||||| || | |||| | || || ||| |||| ||| |||| Sbjct 572967 TCCTTGTTCTGGATCTTGGCCTTTGCAATTTCTGTTGTATCTGAGGGTTCATCCTGGAGA 572908 Query 211074 GTGATC 211079 ||| || Sbjct 572907 GTGGTC 572902 >seq1347 Length=544027 Score = 87.8 bits (96), Expect = 4e-12 Identities = 140/199 (70%), Gaps = 3/199 (2%) Strand=Plus/Plus Query 210921 GACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCTGCG 210980 |||||||| | |||| | || || | ||| || |||||||| |||| ||||||| Sbjct 219222 GACTCTTTCTAGATGCTGTAGTCAGAAAGAGTGGGGCCATCTTCTAGCTCGCTGCCTGCA 219281 Query 210981 AAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTT--GTTTCA 211038 ||||| || | || |||||||| | | |||| || ||||||||||| | ||||| Sbjct 219282 AAGATGAGCCTCTGCTGGTCAGGGGAGATGACTTCTTTATCCTGGATCTTATAGCTTTCA 219341 Query 211039 CGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTCT 211098 | ||||| || |||||| | | ||||| ||||| || |||| || || | |||| Sbjct 219342 CATTTTCAATAGTGTCACTGTGCCCCACCTCCAGAGTAATGATCTTGCCAGTCAAGGTCT 219401 Query 211099 TTACAAACACCTGCATTTT 211117 | | || | |||||||| Sbjct 219402 TCA-GAAGATTTGCATTTT 219419 >seq342 Length=1642288 Score = 84.2 bits (92), Expect = 5e-11 Identities = 136/193 (70%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 210896 AAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCT 210955 |||||| | || || || ||||||| ||| ||| | | ||| || ||| | | | Sbjct 1431357 AAGTCTCAACACGAGATGCAGAGTGGTCTCCTTTGGAACGTTGTAGGGGACAAAG-TACG 1431299 Query 210956 TCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTC 211015 ||| ||||||| ||||||| |||||| || || || || ||||||| |||||| Sbjct 1431298 CCCACCTTCCAGTTGCTTGCTCCTGAAGATCAGTTCCTGCTGATC-GGAGGAATTCCTTC 1431240 Query 211016 CTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGT 211075 || |||||||| || | || | ||| || || | ||| |||||||||||| || Sbjct 1431239 CTCATCCTGGATTTTGCCCCTTACATCTTCTATTGTATTTGAGGGTTCAACCTCGAGGGT 1431180 Query 211076 GATCGTCTTTCCC 211088 ||| ||||||||| Sbjct 1431179 GATGGTCTTTCCC 1431167 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1157942081851455