Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ailuropoda_20melanoleuca_20[refseq_20GCF_5F000004335.2_202009-12-15] 81,467 sequences; 2,299,509,015 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq17 87.8 2e-12 >seq17 Length=4663558 Score = 87.8 bits (96), Expect = 2e-12 Identities = 160/236 (68%), Gaps = 9/236 (4%) Strand=Plus/Plus Query 39058 CCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCA 39117 ||||| || ||||| | ||||| || || ||| || || || || || || || | Sbjct 4172513 CCTCCCCTCAAGCGCAGGACCAAGTGCAGAGTGGATTCCTTCTGGATGTTGTAGTCAGAC 4172572 Query 39118 AGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGC 39177 || || || | || || |||||||| |||||||| || | | ||||||||||| ||| Sbjct 4172573 AGGGTGCGCCCATCTTCCAGCTGTTTCCCCGCAAAGATCAACCTCTGCTGGTCGGGGGGG 4172632 Query 39178 ACGCTCTC---------TTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTC 39228 | || ||| ||||||| ||| ||| |||| || | | || ||||| Sbjct 4172633 ATGCCCTCCTTGTCCTGTTTGTCCTGGATCTTCGCCTTGACGTTCTCGATGGTGTCGCTT 4172692 Query 39229 GACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 | |||||| |||| ||||| | || || |||| || || || ||||| ||||| Sbjct 4172693 GGCTCCACCTCCAGGGTGATGGTCTTACCTGTCAAGGTCTTCACGAAGATCTGCAT 4172748 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429119113167371