Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ailuropoda_20melanoleuca_20[refseq_20GCF_5F000004335.2_202009-12-15]
81,467 sequences; 2,299,509,015 total letters
Query= NC_029997.1
Length=105667
Score E
Sequences producing significant alignments: (Bits) Value
seq456 89.7 3e-13
>seq456
Length=1409724
Score = 89.7 bits (98), Expect = 3e-13
Identities = 142/201 (71%), Gaps = 2/201 (1%)
Strand=Plus/Plus
Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667
||||||||||| ||||| || ||||| || || || || ||||| || || || || ||
Sbjct 1113180 AAAATGCAGATCTTCGTGAAGACCCTGACTGGCAAGACCATCACCCTGGAGGTGGAGCCC 1113239
Query 23668 ACGGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGA 23726
| ||||| | || ||| | || | || | | || ||||| || | || || ||
Sbjct 1113240 AGTGACACCATCGAGAATGTGAAGGCCAAGA-TCCAAGATAAAGAGGGCATCCCCCCTGA 1113298
Query 23727 TCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTA 23786
|| ||| | | || ||||| ||||| || |||||||| | |||||| | |||||
Sbjct 1113299 CCAGCAGAGGCTCATCTTTGCAGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGATTA 1113358
Query 23787 CAACATACAAAAAGAGTCCAC 23807
|||||| || |||||||| ||
Sbjct 1113359 CAACATCCAGAAAGAGTCGAC 1113379
Score = 84.2 bits (92), Expect = 1e-11
Identities = 139/198 (70%), Gaps = 2/198 (1%)
Strand=Plus/Plus
Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670
|||||||| ||||| || ||||| || || || || ||||| || || || || |||
Sbjct 1113411 ATGCAGATCTTCGTGAAGACCCTGACTGGCAAGACCATCACCCTGGAGGTGGAGCCCAGT 1113470
Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729
||||| | || ||| | || | || | | || ||||| || | || || || ||
Sbjct 1113471 GACACCATCGAGAATGTGAAGGCCAAGA-TCCAAGATAAAGAGGGCATCCCCCCTGACCA 1113529
Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789
||| | | || ||||| ||||| || |||||||| | |||||| | ||||||||
Sbjct 1113530 GCAGAGGCTCATCTTTGCAGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGATTACAA 1113589
Query 23790 CATACAAAAAGAGTCCAC 23807
||| || |||||||| ||
Sbjct 1113590 CATCCAGAAAGAGTCGAC 1113607
Score = 84.2 bits (92), Expect = 1e-11
Identities = 139/198 (70%), Gaps = 2/198 (1%)
Strand=Plus/Plus
Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670
|||||||| ||||| || ||||| || || || || ||||| || || || || |||
Sbjct 1113639 ATGCAGATCTTCGTGAAGACCCTGACTGGCAAGACCATCACCCTGGAGGTGGAGCCCAGT 1113698
Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729
||||| | || ||| | || | || | | || ||||| || | || || || ||
Sbjct 1113699 GACACCATCGAGAATGTGAAGGCCAAGA-TCCAAGATAAAGAGGGCATCCCCCCTGACCA 1113757
Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789
||| | | || ||||| ||||| || |||||||| | |||||| | ||||||||
Sbjct 1113758 GCAGAGGCTCATCTTTGCAGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGATTACAA 1113817
Query 23790 CATACAAAAAGAGTCCAC 23807
||| || |||||||| ||
Sbjct 1113818 CATCCAGAAAGAGTCGAC 1113835
Score = 84.2 bits (92), Expect = 1e-11
Identities = 139/198 (70%), Gaps = 2/198 (1%)
Strand=Plus/Plus
Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670
|||||||| ||||| || ||||| || || || || ||||| || || || || |||
Sbjct 1113867 ATGCAGATCTTCGTGAAGACCCTGACTGGCAAGACCATCACCCTGGAGGTGGAGCCCAGT 1113926
Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729
||||| | || ||| | || | || | | || ||||| || | || || || ||
Sbjct 1113927 GACACCATCGAGAATGTGAAGGCCAAGA-TCCAAGATAAAGAGGGCATCCCCCCTGACCA 1113985
Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789
||| | | || ||||| ||||| || |||||||| | |||||| | ||||||||
Sbjct 1113986 GCAGAGGCTCATCTTTGCAGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGATTACAA 1114045
Query 23790 CATACAAAAAGAGTCCAC 23807
||| || |||||||| ||
Sbjct 1114046 CATCCAGAAAGAGTCGAC 1114063
Score = 84.2 bits (92), Expect = 1e-11
Identities = 139/198 (70%), Gaps = 2/198 (1%)
Strand=Plus/Plus
Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670
|||||||| ||||| || ||||| || || || || ||||| || || || || |||
Sbjct 1114095 ATGCAGATCTTCGTGAAGACCCTGACTGGCAAGACCATCACCCTGGAGGTGGAGCCCAGT 1114154
Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729
||||| | || ||| | || | || | | || ||||| || | || || || ||
Sbjct 1114155 GACACCATCGAGAATGTGAAGGCCAAGA-TCCAAGATAAAGAGGGCATCCCCCCTGACCA 1114213
Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789
||| | | || ||||| ||||| || |||||||| | |||||| | ||||||||
Sbjct 1114214 GCAGAGGCTCATCTTTGCAGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGATTACAA 1114273
Query 23790 CATACAAAAAGAGTCCAC 23807
||| || |||||||| ||
Sbjct 1114274 CATCCAGAAAGAGTCGAC 1114291
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 337673997345236
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |