Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ailuropoda_20melanoleuca_20[refseq_20GCF_5F000004335.2_202009-12-15]
81,467 sequences; 2,299,509,015 total letters
Query= NC_030230.1
Length=372707
Score E
Sequences producing significant alignments: (Bits) Value
seq81467 140 8e-28
seq456 138 3e-27
seq17 109 1e-18
seq375 100 7e-16
seq182 100 7e-16
seq242 98.7 2e-15
>seq81467
Length=16805
Score = 140 bits (154), Expect = 8e-28
Identities = 139/180 (77%), Gaps = 0/180 (0%)
Strand=Plus/Plus
Query 7551 CCAACTTTACAACGTTATTATTACGGCGCATGCCTTTGTTATGATTTTCTTTTTTGTTAT 7610
|||| ||||||| || || | || || || || || || || || |||||| | |||||
Sbjct 6860 CCAAATTTACAATGTAGTTGTAACTGCCCACGCATTCGTAATAATCTTCTTTATAGTTAT 6919
Query 7611 GCCGGTTATGATAGGCGGTTTCGGAAATTGATTCGTTCCTTTAATGATTGGTGCTCCTGA 7670
||| ||||||| || || || ||||||||| | || ||||| || |||||||| |||||
Sbjct 6920 GCCTATTATGATCGGAGGCTTTGGAAATTGACTAGTACCTTTGATAATTGGTGCGCCTGA 6979
Query 7671 TATGGCTTTTCCAAGGCTTAACAATATAAGTTTTTGATTACTACCGCCTTCCTTATTTCT 7730
||| || ||||| | | |||||||| ||||| ||||||||||| || ||||| ||||
Sbjct 6980 TATAGCATTTCCCCGAATAAACAATATGAGTTTCTGATTACTACCTCCATCCTTTCTTCT 7039
>seq456
Length=1409724
Score = 138 bits (152), Expect = 3e-27
Identities = 160/216 (74%), Gaps = 0/216 (0%)
Strand=Plus/Minus
Query 225501 CAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATC 225560
|||||| ||||| || || || ||||| |||| |||||||| | | ||| | |||||
Sbjct 1113395 CAGGACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATC 1113336
Query 225561 TTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTC 225620
||| |||||||| || || ||||| || | || ||||| || || || || || || ||
Sbjct 1113335 TTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGGGGGATGCCCTCTTTATC 1113276
Query 225621 TTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGT 225680
||||||||| ||||||| ||||||||||| || ||||| || | ||||| ||
Sbjct 1113275 TTGGATCTTGGCCTTCACATTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGT 1113216
Query 225681 CTTGCCCGTCAAAGTTTTTATGAACACTTGCATTTT 225716
|||||| |||| || || | ||| | ||||||||
Sbjct 1113215 CTTGCCAGTCAGGGTCTTCACGAAGATCTGCATTTT 1113180
Score = 134 bits (148), Expect = 3e-26
Identities = 157/212 (74%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561
|| || ||||||||||| || ||||| |||| |||||||| | | ||| | ||||||
Sbjct 1114306 AGAACCAGGTGGAGAGTCGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCT 1114247
Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621
|| |||||||| || || ||||| || | || ||||| || || || || || || |||
Sbjct 1114246 TCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGGGGGATGCCCTCTTTATCT 1114187
Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681
|||||||| ||||||| ||||||||||| || ||||| || | ||||| |||
Sbjct 1114186 TGGATCTTGGCCTTCACATTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTC 1114127
Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713
||||| |||| || || | ||| | |||||
Sbjct 1114126 TTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 1114095
Score = 132 bits (146), Expect = 1e-25
Identities = 157/213 (74%), Gaps = 0/213 (0%)
Strand=Plus/Minus
Query 225501 CAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATC 225560
|||||| ||||| || || || ||||| |||| |||||||| | | ||| | |||||
Sbjct 1113623 CAGGACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATC 1113564
Query 225561 TTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTC 225620
||| |||||||| || || ||||| || | || ||||| || || || || || || ||
Sbjct 1113563 TTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGGGGGATGCCCTCTTTATC 1113504
Query 225621 TTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGT 225680
||||||||| ||||||| ||||||||||| || ||||| || | ||||| ||
Sbjct 1113503 TTGGATCTTGGCCTTCACATTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGT 1113444
Query 225681 CTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713
|||||| |||| || || | ||| | |||||
Sbjct 1113443 CTTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 1113411
Score = 132 bits (146), Expect = 1e-25
Identities = 157/213 (74%), Gaps = 0/213 (0%)
Strand=Plus/Minus
Query 225501 CAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATC 225560
|||||| ||||| || || || ||||| |||| |||||||| | | ||| | |||||
Sbjct 1113851 CAGGACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATC 1113792
Query 225561 TTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTC 225620
||| |||||||| || || ||||| || | || ||||| || || || || || || ||
Sbjct 1113791 TTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGGGGGATGCCCTCTTTATC 1113732
Query 225621 TTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGT 225680
||||||||| ||||||| ||||||||||| || ||||| || | ||||| ||
Sbjct 1113731 TTGGATCTTGGCCTTCACATTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGT 1113672
Query 225681 CTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713
|||||| |||| || || | ||| | |||||
Sbjct 1113671 CTTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 1113639
Score = 132 bits (146), Expect = 1e-25
Identities = 157/213 (74%), Gaps = 0/213 (0%)
Strand=Plus/Minus
Query 225501 CAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATC 225560
|||||| ||||| || || || ||||| |||| |||||||| | | ||| | |||||
Sbjct 1114079 CAGGACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATC 1114020
Query 225561 TTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTC 225620
||| |||||||| || || ||||| || | || ||||| || || || || || || ||
Sbjct 1114019 TTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGGGGGATGCCCTCTTTATC 1113960
Query 225621 TTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGT 225680
||||||||| ||||||| ||||||||||| || ||||| || | ||||| ||
Sbjct 1113959 TTGGATCTTGGCCTTCACATTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGT 1113900
Query 225681 CTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713
|||||| |||| || || | ||| | |||||
Sbjct 1113899 CTTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 1113867
>seq17
Length=4663558
Score = 109 bits (120), Expect = 1e-18
Identities = 157/223 (70%), Gaps = 9/223 (4%)
Strand=Plus/Plus
Query 225501 CAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATC 225560
|||||| | ||| ||||||||||| || |||| ||||| || | || || | ||||||
Sbjct 4172527 CAGGACCAAGTGCAGAGTGGATTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATC 4172586
Query 225561 TTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCC----- 225615
||| ||||| ||||| || ||||| | | || |||||||| || || || |||
Sbjct 4172587 TTCCAGCTGTTTCCCCGCAAAGATCAACCTCTGCTGGTCGGGGGGGATGCCCTCCTTGTC 4172646
Query 225616 ----TTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671
||||| |||||||| ||| || ||||||||||| | ||||| || |
Sbjct 4172647 CTGTTTGTCCTGGATCTTCGCCTTGACGTTCTCGATGGTGTCGCTTGGCTCCACCTCCAG 4172706
Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATT 225714
||||| ||||| || ||||| || || | ||| | ||||||
Sbjct 4172707 GGTGATGGTCTTACCTGTCAAGGTCTTCACGAAGATCTGCATT 4172749
>seq375
Length=1568959
Score = 100 bits (110), Expect = 7e-16
Identities = 135/186 (73%), Gaps = 4/186 (2%)
Strand=Plus/Minus
Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561
|| || ||||| ||||| || |||| |||| | ||||||| | | | | | ||||||
Sbjct 1493371 AGAACCAGGTGCAGAGTTGACCCTTTCTGGATAATGTAATCAGAAAGACTGATGCCATCT 1493312
Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621
|| |||||||| || | ||||| || | || ||||| || || || ||||| || |||
Sbjct 1493311 TCCAGCTGCTTGCCTACAAAGATGAGCCTCTGCTGGTCAGGGGGGATGCCTTCTTTATCT 1493252
Query 225622 TGGATCTTTTGCTTCACAGCTTC--GATGGTGTCTGAGGTTTCCACGTCTAACGTGATCG 225679
|||||||| ||||||| ||| |||||||| || |||||| || | | ||| |
Sbjct 1493251 TGGATCTTAGCCTTCACA--TTCCTGATGGTGTTACTGGGTTCCACCTCCAGAGAGATAG 1493194
Query 225680 TCTTGC 225685
||||||
Sbjct 1493193 TCTTGC 1493188
>seq182
Length=2248111
Score = 100 bits (110), Expect = 7e-16
Identities = 142/200 (71%), Gaps = 0/200 (0%)
Strand=Plus/Minus
Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551
|| |||||||| ||||| || ||||||| || || || | ||| || |||||
Sbjct 678783 ACAAAGTCTCAACACAAGATGAAGAGTGGCGTCCTTGTGAGCGCCGTAGTCACACAAAGC 678724
Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611
|| ||||| || || |||| ||||||||||| ||| || || || || ||||| ||
Sbjct 678723 TCGTCCATCGTCCAGTTGCTCGCCAGCGAAGATCAGTGTCTGCTGATCAGGAGGAATTCC 678664
Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671
|||||| || ||||||| ||| || ||| | || ||||||| ||| || || |
Sbjct 678663 TTCCTTATCCTGGATCTCGGCCTTTACGCTTTCTACAGTATCTGAGGATTCAACTTCGAC 678604
Query 225672 CGTGATCGTCTTGCCCGTCA 225691
||||| ||||| ||| |||
Sbjct 678603 AGTGATGGTCTTCCCCATCA 678584
>seq242
Length=1955282
Score = 98.7 bits (108), Expect = 2e-15
Identities = 89/112 (79%), Gaps = 0/112 (0%)
Strand=Plus/Minus
Query 5017 CACTTCAATACCTTGCCCCATACACAGGTTGTGTTATAGGAGAATATTTTAGAGATAATG 5076
||||||| ||||| || || || | || ||| || ||||| ||||||||||||||||
Sbjct 313909 CACTTCAGTACCTGGCTCCTTATTCCGGCTGTTCCATGGGAGAGTATTTTAGAGATAATG 313850
Query 5077 GTAAACATGCTTTAATCATCTACGATGATTTAAGTAAACAATTCAACGTATA 5128
| ||||||||||| |||||||||||||| ||| ||||| |||| | |||
Sbjct 313849 GCAAACATGCTTTGATCATCTACGATGACTTATCCAAACAGGTCAAAGGATA 313798
Score = 96.9 bits (106), Expect = 8e-15
Identities = 98/126 (78%), Gaps = 5/126 (4%)
Strand=Plus/Plus
Query 4453 TTAATCAAAAATATTGTGAATATTTGACCATCAGTAATAGAGATAACATTTGTAGGGATA 4512
||||||| ||| |||| || || |||||||| || || || |||||||| || ||
Sbjct 313460 TTAATCATAAA----GTGA-TACCTGTCCATCAGTGATGGAAATGACATTTGTTGGAATG 313514
Query 4513 TAAGCAGAAACATCACCTGCTTGTGTTTCGACAACAGGTAAGGCTGTTAGTGATCCACCA 4572
|||||||| |||||||| ||||||||||| | || ||||| || || | || ||||||
Sbjct 313515 TAAGCAGACACATCACCAGCTTGTGTTTCTATGACTGGTAAAGCAGTCAAGGAGCCACCA 313574
Query 4573 CCAAAA 4578
||||||
Sbjct 313575 CCAAAA 313580
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1191286440778098
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