Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ailuropoda_20melanoleuca_20[refseq_20GCF_5F000004335.2_202009-12-15] 81,467 sequences; 2,299,509,015 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq81467 140 8e-28 seq456 138 3e-27 seq17 109 1e-18 seq375 100 7e-16 seq182 100 7e-16 seq242 98.7 2e-15 >seq81467 Length=16805 Score = 140 bits (154), Expect = 8e-28 Identities = 139/180 (77%), Gaps = 0/180 (0%) Strand=Plus/Plus Query 7551 CCAACTTTACAACGTTATTATTACGGCGCATGCCTTTGTTATGATTTTCTTTTTTGTTAT 7610 |||| ||||||| || || | || || || || || || || || |||||| | ||||| Sbjct 6860 CCAAATTTACAATGTAGTTGTAACTGCCCACGCATTCGTAATAATCTTCTTTATAGTTAT 6919 Query 7611 GCCGGTTATGATAGGCGGTTTCGGAAATTGATTCGTTCCTTTAATGATTGGTGCTCCTGA 7670 ||| ||||||| || || || ||||||||| | || ||||| || |||||||| ||||| Sbjct 6920 GCCTATTATGATCGGAGGCTTTGGAAATTGACTAGTACCTTTGATAATTGGTGCGCCTGA 6979 Query 7671 TATGGCTTTTCCAAGGCTTAACAATATAAGTTTTTGATTACTACCGCCTTCCTTATTTCT 7730 ||| || ||||| | | |||||||| ||||| ||||||||||| || ||||| |||| Sbjct 6980 TATAGCATTTCCCCGAATAAACAATATGAGTTTCTGATTACTACCTCCATCCTTTCTTCT 7039 >seq456 Length=1409724 Score = 138 bits (152), Expect = 3e-27 Identities = 160/216 (74%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 225501 CAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATC 225560 |||||| ||||| || || || ||||| |||| |||||||| | | ||| | ||||| Sbjct 1113395 CAGGACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATC 1113336 Query 225561 TTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTC 225620 ||| |||||||| || || ||||| || | || ||||| || || || || || || || Sbjct 1113335 TTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGGGGGATGCCCTCTTTATC 1113276 Query 225621 TTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGT 225680 ||||||||| ||||||| ||||||||||| || ||||| || | ||||| || Sbjct 1113275 TTGGATCTTGGCCTTCACATTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGT 1113216 Query 225681 CTTGCCCGTCAAAGTTTTTATGAACACTTGCATTTT 225716 |||||| |||| || || | ||| | |||||||| Sbjct 1113215 CTTGCCAGTCAGGGTCTTCACGAAGATCTGCATTTT 1113180 Score = 134 bits (148), Expect = 3e-26 Identities = 157/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || || ||||||||||| || ||||| |||| |||||||| | | ||| | |||||| Sbjct 1114306 AGAACCAGGTGGAGAGTCGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCT 1114247 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || |||||||| || || ||||| || | || ||||| || || || || || || ||| Sbjct 1114246 TCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGGGGGATGCCCTCTTTATCT 1114187 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 |||||||| ||||||| ||||||||||| || ||||| || | ||||| ||| Sbjct 1114186 TGGATCTTGGCCTTCACATTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTC 1114127 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||||| |||| || || | ||| | ||||| Sbjct 1114126 TTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 1114095 Score = 132 bits (146), Expect = 1e-25 Identities = 157/213 (74%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 225501 CAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATC 225560 |||||| ||||| || || || ||||| |||| |||||||| | | ||| | ||||| Sbjct 1113623 CAGGACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATC 1113564 Query 225561 TTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTC 225620 ||| |||||||| || || ||||| || | || ||||| || || || || || || || Sbjct 1113563 TTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGGGGGATGCCCTCTTTATC 1113504 Query 225621 TTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGT 225680 ||||||||| ||||||| ||||||||||| || ||||| || | ||||| || Sbjct 1113503 TTGGATCTTGGCCTTCACATTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGT 1113444 Query 225681 CTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 |||||| |||| || || | ||| | ||||| Sbjct 1113443 CTTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 1113411 Score = 132 bits (146), Expect = 1e-25 Identities = 157/213 (74%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 225501 CAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATC 225560 |||||| ||||| || || || ||||| |||| |||||||| | | ||| | ||||| Sbjct 1113851 CAGGACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATC 1113792 Query 225561 TTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTC 225620 ||| |||||||| || || ||||| || | || ||||| || || || || || || || Sbjct 1113791 TTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGGGGGATGCCCTCTTTATC 1113732 Query 225621 TTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGT 225680 ||||||||| ||||||| ||||||||||| || ||||| || | ||||| || Sbjct 1113731 TTGGATCTTGGCCTTCACATTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGT 1113672 Query 225681 CTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 |||||| |||| || || | ||| | ||||| Sbjct 1113671 CTTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 1113639 Score = 132 bits (146), Expect = 1e-25 Identities = 157/213 (74%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 225501 CAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATC 225560 |||||| ||||| || || || ||||| |||| |||||||| | | ||| | ||||| Sbjct 1114079 CAGGACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATC 1114020 Query 225561 TTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTC 225620 ||| |||||||| || || ||||| || | || ||||| || || || || || || || Sbjct 1114019 TTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGGGGGATGCCCTCTTTATC 1113960 Query 225621 TTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGT 225680 ||||||||| ||||||| ||||||||||| || ||||| || | ||||| || Sbjct 1113959 TTGGATCTTGGCCTTCACATTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGT 1113900 Query 225681 CTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 |||||| |||| || || | ||| | ||||| Sbjct 1113899 CTTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 1113867 >seq17 Length=4663558 Score = 109 bits (120), Expect = 1e-18 Identities = 157/223 (70%), Gaps = 9/223 (4%) Strand=Plus/Plus Query 225501 CAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATC 225560 |||||| | ||| ||||||||||| || |||| ||||| || | || || | |||||| Sbjct 4172527 CAGGACCAAGTGCAGAGTGGATTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATC 4172586 Query 225561 TTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCC----- 225615 ||| ||||| ||||| || ||||| | | || |||||||| || || || ||| Sbjct 4172587 TTCCAGCTGTTTCCCCGCAAAGATCAACCTCTGCTGGTCGGGGGGGATGCCCTCCTTGTC 4172646 Query 225616 ----TTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 ||||| |||||||| ||| || ||||||||||| | ||||| || | Sbjct 4172647 CTGTTTGTCCTGGATCTTCGCCTTGACGTTCTCGATGGTGTCGCTTGGCTCCACCTCCAG 4172706 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATT 225714 ||||| ||||| || ||||| || || | ||| | |||||| Sbjct 4172707 GGTGATGGTCTTACCTGTCAAGGTCTTCACGAAGATCTGCATT 4172749 >seq375 Length=1568959 Score = 100 bits (110), Expect = 7e-16 Identities = 135/186 (73%), Gaps = 4/186 (2%) Strand=Plus/Minus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || || ||||| ||||| || |||| |||| | ||||||| | | | | | |||||| Sbjct 1493371 AGAACCAGGTGCAGAGTTGACCCTTTCTGGATAATGTAATCAGAAAGACTGATGCCATCT 1493312 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || |||||||| || | ||||| || | || ||||| || || || ||||| || ||| Sbjct 1493311 TCCAGCTGCTTGCCTACAAAGATGAGCCTCTGCTGGTCAGGGGGGATGCCTTCTTTATCT 1493252 Query 225622 TGGATCTTTTGCTTCACAGCTTC--GATGGTGTCTGAGGTTTCCACGTCTAACGTGATCG 225679 |||||||| ||||||| ||| |||||||| || |||||| || | | ||| | Sbjct 1493251 TGGATCTTAGCCTTCACA--TTCCTGATGGTGTTACTGGGTTCCACCTCCAGAGAGATAG 1493194 Query 225680 TCTTGC 225685 |||||| Sbjct 1493193 TCTTGC 1493188 >seq182 Length=2248111 Score = 100 bits (110), Expect = 7e-16 Identities = 142/200 (71%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 || |||||||| ||||| || ||||||| || || || | ||| || ||||| Sbjct 678783 ACAAAGTCTCAACACAAGATGAAGAGTGGCGTCCTTGTGAGCGCCGTAGTCACACAAAGC 678724 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 || ||||| || || |||| ||||||||||| ||| || || || || ||||| || Sbjct 678723 TCGTCCATCGTCCAGTTGCTCGCCAGCGAAGATCAGTGTCTGCTGATCAGGAGGAATTCC 678664 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 |||||| || ||||||| ||| || ||| | || ||||||| ||| || || | Sbjct 678663 TTCCTTATCCTGGATCTCGGCCTTTACGCTTTCTACAGTATCTGAGGATTCAACTTCGAC 678604 Query 225672 CGTGATCGTCTTGCCCGTCA 225691 ||||| ||||| ||| ||| Sbjct 678603 AGTGATGGTCTTCCCCATCA 678584 >seq242 Length=1955282 Score = 98.7 bits (108), Expect = 2e-15 Identities = 89/112 (79%), Gaps = 0/112 (0%) Strand=Plus/Minus Query 5017 CACTTCAATACCTTGCCCCATACACAGGTTGTGTTATAGGAGAATATTTTAGAGATAATG 5076 ||||||| ||||| || || || | || ||| || ||||| |||||||||||||||| Sbjct 313909 CACTTCAGTACCTGGCTCCTTATTCCGGCTGTTCCATGGGAGAGTATTTTAGAGATAATG 313850 Query 5077 GTAAACATGCTTTAATCATCTACGATGATTTAAGTAAACAATTCAACGTATA 5128 | ||||||||||| |||||||||||||| ||| ||||| |||| | ||| Sbjct 313849 GCAAACATGCTTTGATCATCTACGATGACTTATCCAAACAGGTCAAAGGATA 313798 Score = 96.9 bits (106), Expect = 8e-15 Identities = 98/126 (78%), Gaps = 5/126 (4%) Strand=Plus/Plus Query 4453 TTAATCAAAAATATTGTGAATATTTGACCATCAGTAATAGAGATAACATTTGTAGGGATA 4512 ||||||| ||| |||| || || |||||||| || || || |||||||| || || Sbjct 313460 TTAATCATAAA----GTGA-TACCTGTCCATCAGTGATGGAAATGACATTTGTTGGAATG 313514 Query 4513 TAAGCAGAAACATCACCTGCTTGTGTTTCGACAACAGGTAAGGCTGTTAGTGATCCACCA 4572 |||||||| |||||||| ||||||||||| | || ||||| || || | || |||||| Sbjct 313515 TAAGCAGACACATCACCAGCTTGTGTTTCTATGACTGGTAAAGCAGTCAAGGAGCCACCA 313574 Query 4573 CCAAAA 4578 |||||| Sbjct 313575 CCAAAA 313580 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1191286440778098