Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ailuropoda_20melanoleuca_20[refseq_20GCF_5F000004335.2_202009-12-15]
81,467 sequences; 2,299,509,015 total letters
Query= NC_030394.2
Length=126965
Score E
Sequences producing significant alignments: (Bits) Value
seq592 181 9e-41
>seq592
Length=1169299
Score = 181 bits (200), Expect = 9e-41
Identities = 139/165 (84%), Gaps = 0/165 (0%)
Strand=Plus/Plus
Query 29714 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGC 29773
|| ||||||| ||| || |||||||| ||||| || | ||||||||||||||| ||||||
Sbjct 485547 AGGCCGGTGATGTGCGCAATCATGTAGGTGAGCAGGGCGTAGCTGGCGATGTTGAAGGGC 485606
Query 29774 ACCCCGAGCCCCATGTCCCCTGACCTCTGGTAGAGCTGGCACGAGAGCTCTCCGTCGCTC 29833
|| || || ||||||||||| ||||||||||| |||||||| || ||||| |||| |
Sbjct 485607 ACGCCCAGGCCCATGTCCCCCGACCTCTGGTACAGCTGGCAGGACAGCTCGCCGTTCACC 485666
Query 29834 ACGTAAAACTGACACATGGCATGGCACGGAGGAAGGGCCATGAGA 29878
||||| ||||| || | |||||||||||||||||||||||| |||
Sbjct 485667 ACGTAGAACTGGCAGAGGGCATGGCACGGAGGAAGGGCCATCAGA 485711
Score = 96.9 bits (106), Expect = 3e-15
Identities = 111/147 (76%), Gaps = 2/147 (1%)
Strand=Plus/Plus
Query 30017 AAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTG-TGCTCGAA 30075
|||||||||||||| || || || || || || | || || ||||| ||| ||| |||
Sbjct 488158 AAATGCCTCCACTGAAAGCCATAAACTGGGCCTAAATCCCCTTCTTCTCTGCTGC-AGAA 488216
Query 30076 GCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTC 30135
||| ||||||| ||||||| || || |||||||||||||| || || |||||
Sbjct 488217 TCCCAGGCTGTCCAAGAAGTCTCGAGACCCATTGGCGTCCCAGATTTTCACTCCCTTGGA 488276
Query 30136 GGAGAGCTCTTTGGAGTTTGTGGACCC 30162
|| ||||| || | ||||||||||||
Sbjct 488277 AGACAGCTCCTTAGCGTTTGTGGACCC 488303
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 405759929062762
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |