Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ailuropoda_20melanoleuca_20[refseq_20GCF_5F000004335.2_202009-12-15] 81,467 sequences; 2,299,509,015 total letters Query= NC_030394.2 Length=126965 Score E Sequences producing significant alignments: (Bits) Value seq592 181 9e-41 >seq592 Length=1169299 Score = 181 bits (200), Expect = 9e-41 Identities = 139/165 (84%), Gaps = 0/165 (0%) Strand=Plus/Plus Query 29714 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGC 29773 || ||||||| ||| || |||||||| ||||| || | ||||||||||||||| |||||| Sbjct 485547 AGGCCGGTGATGTGCGCAATCATGTAGGTGAGCAGGGCGTAGCTGGCGATGTTGAAGGGC 485606 Query 29774 ACCCCGAGCCCCATGTCCCCTGACCTCTGGTAGAGCTGGCACGAGAGCTCTCCGTCGCTC 29833 || || || ||||||||||| ||||||||||| |||||||| || ||||| |||| | Sbjct 485607 ACGCCCAGGCCCATGTCCCCCGACCTCTGGTACAGCTGGCAGGACAGCTCGCCGTTCACC 485666 Query 29834 ACGTAAAACTGACACATGGCATGGCACGGAGGAAGGGCCATGAGA 29878 ||||| ||||| || | |||||||||||||||||||||||| ||| Sbjct 485667 ACGTAGAACTGGCAGAGGGCATGGCACGGAGGAAGGGCCATCAGA 485711 Score = 96.9 bits (106), Expect = 3e-15 Identities = 111/147 (76%), Gaps = 2/147 (1%) Strand=Plus/Plus Query 30017 AAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTG-TGCTCGAA 30075 |||||||||||||| || || || || || || | || || ||||| ||| ||| ||| Sbjct 488158 AAATGCCTCCACTGAAAGCCATAAACTGGGCCTAAATCCCCTTCTTCTCTGCTGC-AGAA 488216 Query 30076 GCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTC 30135 ||| ||||||| ||||||| || || |||||||||||||| || || ||||| Sbjct 488217 TCCCAGGCTGTCCAAGAAGTCTCGAGACCCATTGGCGTCCCAGATTTTCACTCCCTTGGA 488276 Query 30136 GGAGAGCTCTTTGGAGTTTGTGGACCC 30162 || ||||| || | |||||||||||| Sbjct 488277 AGACAGCTCCTTAGCGTTTGTGGACCC 488303 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 405759929062762