Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ailuropoda_20melanoleuca_20[refseq_20GCF_5F000004335.2_202009-12-15] 81,467 sequences; 2,299,509,015 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq497 95.1 1e-14 seq590 87.8 2e-12 >seq497 Length=1337528 Score = 95.1 bits (104), Expect = 1e-14 Identities = 94/122 (77%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 4572 TCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCATTAAACCTCTCTTTTTA 4631 || ||||||||||| ||||| || |||||||| | || ||||| | || | || || Sbjct 317825 TCATCTCTGCTAATAAGTTCATTGGAAAACGTGAGGCCAGGCATCAGGCCACGTTTCTTG 317766 Query 4632 AGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTCTACGGCGGCAAACGCT 4691 ||||| ||||| | ||||| || ||||||||||| || ||||| || |||||||| || Sbjct 317765 AGCCAGAATATTGATGCAAAAGAACCAGAAAAGAAGATTCCTTCCACAGCGGCAAAGGCC 317706 Query 4692 AC 4693 || Sbjct 317705 AC 317704 >seq590 Length=1172511 Score = 87.8 bits (96), Expect = 2e-12 Identities = 66/78 (85%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 4259 TTGGTATTCGGATACTCGCTTTTCGAAGAAATTAGTTTTGCCTTCTAACGAAATATTTTC 4318 ||| || || | ||||| || || |||||||| ||||| |||||||||||||| ||||| Sbjct 851827 TTGATACTCTGCAACTCGTTTCTCAAAGAAATTTGTTTTCCCTTCTAACGAAATGTTTTC 851768 Query 4319 CATAAAATCAAACGGATT 4336 |||||||||||| ||||| Sbjct 851767 CATAAAATCAAAGGGATT 851750 Score = 84.2 bits (92), Expect = 2e-11 Identities = 97/130 (75%), Gaps = 3/130 (2%) Strand=Plus/Minus Query 4921 AAAATCTTTCTACTAAGTTTTCGTTTACTATACCGTCACTGGCTGCAAAAAACGCCAAAA 4980 |||||||| || || ||||| || || || || ||||||||||||||||| || || | Sbjct 812817 AAAATCTT---ACCAAATTTTCATTCACAATTCCATCACTGGCTGCAAAAAAGGCTAATA 812761 Query 4981 CATGAGATATAAAGTACTGTTCGTCAGGCTTAAGTTTTTTCCAGTGGGGCAAATCTTTAG 5040 ||||| ||||| || | || || | ||||| || |||||||| || | ||| || | Sbjct 812760 TGTGAGAGATAAAATATTTCTCATCTGATTTAAGCTTGTTCCAGTGAGGGAGATCCTTTG 812701 Query 5041 TTAAATCAAC 5050 ||| ||||| Sbjct 812700 ATAAGTCAAC 812691 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 426625591393511