Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ailuropoda_20melanoleuca_20[refseq_20GCF_5F000004335.2_202009-12-15]
81,467 sequences; 2,299,509,015 total letters
Query= NC_030842.1
Length=115510
Score E
Sequences producing significant alignments: (Bits) Value
seq592 156 3e-33
>seq592
Length=1169299
Score = 156 bits (172), Expect = 3e-33
Identities = 133/164 (81%), Gaps = 0/164 (0%)
Strand=Plus/Plus
Query 27208 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGT 27267
|| ||||||| ||| || |||||||| ||||| || | ||||||||||||||| |||||
Sbjct 485547 AGGCCGGTGATGTGCGCAATCATGTAGGTGAGCAGGGCGTAGCTGGCGATGTTGAAGGGC 485606
Query 27268 ACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCATCGCTT 27327
|| || || ||||||||||||||||||||||| ||||| || || ||||| || |
Sbjct 485607 ACGCCCAGGCCCATGTCCCCCGACCTCTGGTACAGCTGGCAGGACAGCTCGCCGTTCACC 485666
Query 27328 ACGTAAAACTGACATATGGCGTGGCACGGAGGAAGAGCCATGAG 27371
||||| ||||| || | ||| |||||||||||||| ||||| ||
Sbjct 485667 ACGTAGAACTGGCAGAGGGCATGGCACGGAGGAAGGGCCATCAG 485710
Score = 104 bits (114), Expect = 2e-17
Identities = 126/169 (75%), Gaps = 2/169 (1%)
Strand=Plus/Plus
Query 27489 CATGTCCGTGTACTCTGCTCCGAAATGCCTCCATTGGAACCCGTACACCGGTCCCAGGTC 27548
||| || |||| ||||| || ||||||||||| || || || || || || || | ||
Sbjct 488136 CATATCTTTGTATTCTGCCCCAAAATGCCTCCACTGAAAGCCATAAACTGGGCCTAAATC 488195
Query 27549 TCCCTCTTCCCTG-TGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGT 27607
|| ||||| ||| ||| ||| ||| ||||||| ||||||| || || |||||||
Sbjct 488196 CCCTTCTTCTCTGCTGC-AGAATCCCAGGCTGTCCAAGAAGTCTCGAGACCCATTGGCGT 488254
Query 27608 CCCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCC 27656
||||||| || || ||||| || ||||| || | ||||||||||||
Sbjct 488255 CCCAGATTTTCACTCCCTTGGAAGACAGCTCCTTAGCGTTTGTGGACCC 488303
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 369140324037677
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |