Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ailuropoda_20melanoleuca_20[refseq_20GCF_5F000004335.2_202009-12-15] 81,467 sequences; 2,299,509,015 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq38 176 6e-39 seq3057 123 4e-23 seq497 120 4e-22 seq590 111 2e-19 seq3107 96.9 5e-15 seq37469 93.3 6e-14 >seq38 Length=3903652 Score = 176 bits (194), Expect = 6e-39 Identities = 568/876 (65%), Gaps = 43/876 (5%) Strand=Plus/Minus Query 46323 TGACATAACTCCCATTTTTTGGTATTCACCTACACGTTTCTCGAAAAAATTAGTTTTGCC 46382 |||||| ||| ||| | || | ||||| | | || || || || ||||| || || Sbjct 2424278 TGACATCACTGTCATCCTCTGAGACCCACCTCCTCTCTTTTCAAAGAAGTTAGTCTTCCC 2424219 Query 46383 TTCCAATGATA-TATTTTCCATAAAATCAAACGGATTAGTAACATTATAAAtttttttAA 46441 || || ||| | || | ||| |||| ||| | ||||| || || | || ||| Sbjct 2424218 TTGCAGTGAAAATACTCTCCTTAAAGTCAGATGGATT-------TTCTAC-TCTTGCTAA 2424167 Query 46442 ATCCTAATTCTGAAATCAGTCTATCTGCAACGAATTCTATATACGTTTTCATCATTTCAC 46501 | ||| || | |||| ||||| |||||||| || | || || | | Sbjct 2424166 AACCTCGCTCCCGCGTAAGTCGGTCTGCCACGAATTCAGTACAGTGCTTTATTAAGATGC 2424107 Query 46502 AATTCATTCCTATGAGTTTGACCGGTAGAGCCTCCGTAAGAAACTCTTGTTCAATAGTGA 46561 | ||||| || | ||| || || || | ||||| | || |||||| |||| || | | Sbjct 2424106 AGTTCATCCCAACGAGATTCACGGGCAAGGCCTCTGGGAGGAACTCTCGTTCTATCCTAA 2424047 Query 46562 CAGCATCCGATA-TTATCGATGTTACTGTTTCCTCACTTGGTGGATGCATCAAATGTTTA 46620 |||||| |||| |||| | ||| | ||| ||| ||| | || ||||| Sbjct 2424046 CAGCATT-GATAATTATTTCCTTCACTCTCAGCTCCGAGGGTTCATGGACCAGGTGTTTG 2423988 Query 46621 AACATTAAACATGCAAAATCACAATGAAGGCCTTCATCTCTACTAATTAATTCGTTAGAA 46680 ||||| | | ||||| ||||| || | ||||||||||| ||||| ||| | || ||| Sbjct 2423987 AACATCAGGCGGGCAAAGTCACAGTGTAAACCTTCATCTCTGCTAATAAATACCTTGGAA 2423928 Query 46681 AATGTGAGCCCAGGCATTAGTCCACGCTTTTTGAGCCAAAATATAGCCGCGAAAGATCCA 46740 |||||||| |||||||| || |||||||| |||| | ||| || | ||| Sbjct 2423927 AATGTGAGGCCAGGCAT----------TTCTTGAGCCAGAATAACGACGCAGAAAAACCA 2423878 Query 46741 GAAAAGAATATGCCTTCTACAGCCGCGAATGCGACAAGTCTCTCTCCGTAACTGGCATCA 46800 ||| || || |||| ||||| || || || |||| | || || || | | || Sbjct 2423877 GAAGAG---ATTTCTTCCACAGCAGCAAAGGCCACAACCCGTTCCCCATAGGTAGTCTCT 2423821 Query 46801 TTAT---GAATCCACCTTTGAGCCCAATCAGCCTTTTTCTTTACACAAGGCATTGTTTCT 46857 || | |||||| |||||||| |||| ||||| |||||||||| || || Sbjct 2423820 TTGTCCCCAATCCAATGCAAGGCCCAATCTGCCTCCTTCTTCCCACAAGGCATCGTCTCA 2423761 Query 46858 ATAGCATTAAAGAGAAAGtttttttCATCACTATCTTTAACATATGTATCTATTAAAAGA 46917 || ||||| |||||||| | |||| | ||||||| || | || | | ||| Sbjct 2423760 ATGGCATTGAAGAGAAATTCCCTTTCTTTGGAATCTTTA----ATTTGTCAGTGAGGAGA 2423705 Query 46918 CTATACAT--------TTCTGA-ATGAATGTTTTCAATAGCCATCTGAAATCCGTAAAAA 46968 || |||| |||||| || ||| |||| | || || || || || || ||| Sbjct 2423704 CTGCACATCTCATCCATTCTGAGATATATGATTTCCGTGGCAATTTGGAAGCCATAGAAA 2423645 Query 46969 CATCTTGCTTCAGTAATCTGTACCTCTGTACAAAATCGTTCAGACAAATTCTCATTCACT 47028 || | ||||| || ||||| || || | ||| || || ||| || ||||| ||| Sbjct 2423644 CAGCGGGCTTCTGTCATCTGAACTACTTGGCTAAACCGCTCCACCAAGTTTTCATTTACT 2423585 Query 47029 ATTCCATCACTAGCAGCAAAAAATGCCAATACATGTTTAATAAAATATTTTTCATCGGTA 47088 | |||||||| || ||||| || |||| ||||| |||||||| | || | Sbjct 2423584 CTGCCATCACTTGCTGCAAAGAAAGCCAGAACATGGCATATAAAATA---GCCCTCAGGC 2423528 Query 47089 GTCAGTTTATTCCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAGAAT 47148 |||| | |||| || || || || | ||| || |||| |||||||| || Sbjct 2423527 TTCAGGGATTCCCAGCGCCGAATGTCCTTGGAAAGATCCACCTCTTTAGCTGTCCGAAAG 2423468 Query 47149 GACGCCTCTGCTTTTTTATACATATTCCATATATCA 47184 || ||||| ||||| |||| ||| | ||| | |||| Sbjct 2423467 GAGGCCTCAGCTTTCTTATCCATCTGCCAAAGATCA 2423432 >seq3057 Length=47849 Score = 123 bits (136), Expect = 4e-23 Identities = 107/133 (80%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 75722 TGAAATTCTCCAGACAATACTCTTCGAGTGTAAATATTACTGGTATATGGTTCCACAGAT 75781 ||||||||||| ||||| ||||| ||||| || || || || ||||| ||||| | || Sbjct 11465 TGAAATTCTCCTGACAAGACTCTGCGAGTATAGATGTTGCTTGTATAAGGTTCAATGGAC 11406 Query 75782 TCATTGTTTCCCAAAATTTGAGCAGTTGAAGCAGTCGGCATAGGTGCCACCAATAAACTA 75841 ||||| ||||||| ||| ||||||||||||||||| ||||| || || | | |||||| Sbjct 11405 TCATTATTTCCCAGAATCTGAGCAGTTGAAGCAGTAGGCATCGGGGCAATAAGTAAACTG 11346 Query 75842 TTTCTGAGACCAT 75854 ||||| | ||||| Sbjct 11345 TTTCTTATACCAT 11333 Score = 87.8 bits (96), Expect = 3e-12 Identities = 116/161 (72%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 75986 GCTAGTTCGCAACTCGCCTCTAACGCACCGTAATAAATTGTTTCGAAAATCTTCTTATTA 76045 || || || || || || || || || || |||||||| ||||| || |||| |||||| Sbjct 7306 GCCAGGTCACAGCTGGCTTCCAAGGCTCCATAATAAATAGTTTCAAATATCTGCTTATTC 7247 Query 76046 AGATCTTGCGCTTCAAGACTATCAAAAGGATAATGTAAAAGAATAAATGCATCTGCTAGT 76105 || || ||||| |||| ||||||||||| | ||||| || |||||||| || Sbjct 7246 AGTAGCTGGGCTTCTGGACTCTCAAAAGGATACCTCATCAGAATGAAAGCATCTGCCAGA 7187 Query 76106 CCCTGAACTCCAATACCAATAGGTCTATGTCTCTTATTGGA 76146 || || || || || ||||| || | ||| | ||||| || Sbjct 7186 CCTTGTACCCCGATTCCAATGGGGCGATGGCGTTTATTTGA 7146 >seq497 Length=1337528 Score = 120 bits (132), Expect = 4e-22 Identities = 107/134 (80%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 46654 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGCCCAGGCATTAGTCCACGCTTTTTG 46713 |||||||| ||||| | ||| || ||||| ||||| |||||||| || ||||| || ||| Sbjct 317825 TCATCTCTGCTAATAAGTTCATTGGAAAACGTGAGGCCAGGCATCAGGCCACGTTTCTTG 317766 Query 46714 AGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACAGCCGCGAATGCG 46773 ||||| ||||| | || ||||| ||||||||||| || ||||| ||||| || || || Sbjct 317765 AGCCAGAATATTGATGCAAAAGAACCAGAAAAGAAGATTCCTTCCACAGCGGCAAAGGCC 317706 Query 46774 ACAAGTCTCTCTCC 46787 |||| || ||||| Sbjct 317705 ACAACCCTTTCTCC 317692 >seq590 Length=1172511 Score = 111 bits (122), Expect = 2e-19 Identities = 106/136 (78%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 46652 CTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGCCCAGGCATTAGTCCACGCTTTT 46711 |||||||||| || || | ||| || ||||| ||||| |||||||| || || | || | Sbjct 827238 CTTCATCTCTGCTGATGAGTTCATTGGAAAACGTGAGTCCAGGCATAAGACCTCTTTTCT 827179 Query 46712 TGAGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACAGCCGCGAATG 46771 | ||||| |||||||| || |||||||| || ||||| || ||||||||||| || || | Sbjct 827178 TTAGCCAGAATATAGCAGCAAAAGATCCCGAGAAGAAAATCCCTTCTACAGCAGCAAAAG 827119 Query 46772 CGACAAGTCTCTCTCC 46787 | || | ||| || || Sbjct 827118 CCACCACTCTTTCCCC 827103 Score = 93.3 bits (102), Expect = 6e-14 Identities = 72/86 (84%), Gaps = 0/86 (0%) Strand=Plus/Minus Query 47127 TACTTCTTCAGCTGTCCAGAATGACGCCTCTGCTTTTTTATACATATTCCATATATCACG 47186 ||| ||||| ||||||||||| || |||| ||| | ||||||||| ||||| |||||| | Sbjct 809076 TACCTCTTCTGCTGTCCAGAAGGATGCCTGTGCCTGTTTATACATTTTCCAAATATCAGG 809017 Query 47187 ATATTGGATCGGAAAAATAACAAATC 47212 |||||||| ||||| || ||||||| Sbjct 809016 GTATTGGATTGGAAAGATGACAAATC 808991 Score = 86.0 bits (94), Expect = 9e-12 Identities = 85/110 (77%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 47013 CAAATTCTCATTCACTATTCCATCACTAGCAGCAAAAAATGCCAATACATGTTTAATAAA 47072 |||||| |||||||| ||||||||||| || |||||||| || |||| || ||||| Sbjct 812807 CAAATTTTCATTCACAATTCCATCACTGGCTGCAAAAAAGGCTAATATGTGAGAGATAAA 812748 Query 47073 ATATTTTTCATCGGTAGTCAGTTTATTCCAGTCATTGATATCTTTTGATA 47122 |||||| ||||| | | || || ||||||| | || ||| ||||||| Sbjct 812747 ATATTTCTCATCTGATTTAAGCTTGTTCCAGTGAGGGAGATCCTTTGATA 812698 >seq3107 Length=44217 Score = 96.9 bits (106), Expect = 5e-15 Identities = 121/166 (73%), Gaps = 0/166 (0%) Strand=Plus/Minus Query 77339 CTAAATAGtttttttGTTTCCTTGTGTAGATTCGATACGGCTATTCTAGCAGCTAGAATT 77398 || || | ||| |||||||| ||||| | || || || || || || || || || || Sbjct 40435 CTGAACACTTTCTTTGTTTCTTTGTGCAAGTTGGACACTGCAATCCTTGCTGCCAGGATG 40376 Query 77399 GCATAGTCAGGATGTTGTGTAGTGCAGGTGGCTGCTATTTCTGCCGCTAAAGTATCTAAT 77458 ||||||||||| || | || || |||| || ||| | || || || |||||||||| | Sbjct 40375 GCATAGTCAGGGTGCTCAGTCGTCAAGGTCGCAGCTGTCTCAGCAGCCAAAGTATCTAGT 40316 Query 77459 TCTATAGTAGTAACTCCGTTATATAGCCCTTGAATAACTTTCATGG 77504 || | ||| || || || | |||| ||||| || |||||||||| Sbjct 40315 TCCACAGTGGTGACCCCACTGTATAAGCCTTGGATTACTTTCATGG 40270 >seq37469 Length=236 Score = 93.3 bits (102), Expect = 6e-14 Identities = 113/154 (73%), Gaps = 0/154 (0%) Strand=Plus/Plus Query 77351 tttGTTTCCTTGTGTAGATTCGATACGGCTATTCTAGCAGCTAGAATTGCATAGTCAGGA 77410 |||||||| ||||| | || || || || || || || || || || ||||||||||| Sbjct 1 TTTGTTTCTTTGTGCAAGTTGGACACTGCAATCCTTGCTGCCAGGATGGCATAGTCAGGG 60 Query 77411 TGTTGTGTAGTGCAGGTGGCTGCTATTTCTGCCGCTAAAGTATCTAATTCTATAGTAGTA 77470 || | || || |||| || ||| | || || || |||||||||| ||| | ||| || Sbjct 61 TGCTTAGTCGTCAAGGTCGCAGCTGTCTCAGCAGCCAAAGTATCTAGTTCCACAGTGGTG 120 Query 77471 ACTCCGTTATATAGCCCTTGAATAACTTTCATGG 77504 || || | |||| ||||| || |||||||||| Sbjct 121 ACCCCACTGTATAAGCCTTGGATTACTTTCATGG 154 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712208392165440