Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ailuropoda_20melanoleuca_20[refseq_20GCF_5F000004335.2_202009-12-15]
81,467 sequences; 2,299,509,015 total letters
Query= NC_031038.1
Length=222832
Score E
Sequences producing significant alignments: (Bits) Value
seq38 176 6e-39
seq3057 123 4e-23
seq497 120 4e-22
seq590 111 2e-19
seq3107 96.9 5e-15
seq37469 93.3 6e-14
>seq38
Length=3903652
Score = 176 bits (194), Expect = 6e-39
Identities = 568/876 (65%), Gaps = 43/876 (5%)
Strand=Plus/Minus
Query 46323 TGACATAACTCCCATTTTTTGGTATTCACCTACACGTTTCTCGAAAAAATTAGTTTTGCC 46382
|||||| ||| ||| | || | ||||| | | || || || || ||||| || ||
Sbjct 2424278 TGACATCACTGTCATCCTCTGAGACCCACCTCCTCTCTTTTCAAAGAAGTTAGTCTTCCC 2424219
Query 46383 TTCCAATGATA-TATTTTCCATAAAATCAAACGGATTAGTAACATTATAAAtttttttAA 46441
|| || ||| | || | ||| |||| ||| | ||||| || || | || |||
Sbjct 2424218 TTGCAGTGAAAATACTCTCCTTAAAGTCAGATGGATT-------TTCTAC-TCTTGCTAA 2424167
Query 46442 ATCCTAATTCTGAAATCAGTCTATCTGCAACGAATTCTATATACGTTTTCATCATTTCAC 46501
| ||| || | |||| ||||| |||||||| || | || || | |
Sbjct 2424166 AACCTCGCTCCCGCGTAAGTCGGTCTGCCACGAATTCAGTACAGTGCTTTATTAAGATGC 2424107
Query 46502 AATTCATTCCTATGAGTTTGACCGGTAGAGCCTCCGTAAGAAACTCTTGTTCAATAGTGA 46561
| ||||| || | ||| || || || | ||||| | || |||||| |||| || | |
Sbjct 2424106 AGTTCATCCCAACGAGATTCACGGGCAAGGCCTCTGGGAGGAACTCTCGTTCTATCCTAA 2424047
Query 46562 CAGCATCCGATA-TTATCGATGTTACTGTTTCCTCACTTGGTGGATGCATCAAATGTTTA 46620
|||||| |||| |||| | ||| | ||| ||| ||| | || |||||
Sbjct 2424046 CAGCATT-GATAATTATTTCCTTCACTCTCAGCTCCGAGGGTTCATGGACCAGGTGTTTG 2423988
Query 46621 AACATTAAACATGCAAAATCACAATGAAGGCCTTCATCTCTACTAATTAATTCGTTAGAA 46680
||||| | | ||||| ||||| || | ||||||||||| ||||| ||| | || |||
Sbjct 2423987 AACATCAGGCGGGCAAAGTCACAGTGTAAACCTTCATCTCTGCTAATAAATACCTTGGAA 2423928
Query 46681 AATGTGAGCCCAGGCATTAGTCCACGCTTTTTGAGCCAAAATATAGCCGCGAAAGATCCA 46740
|||||||| |||||||| || |||||||| |||| | ||| || | |||
Sbjct 2423927 AATGTGAGGCCAGGCAT----------TTCTTGAGCCAGAATAACGACGCAGAAAAACCA 2423878
Query 46741 GAAAAGAATATGCCTTCTACAGCCGCGAATGCGACAAGTCTCTCTCCGTAACTGGCATCA 46800
||| || || |||| ||||| || || || |||| | || || || | | ||
Sbjct 2423877 GAAGAG---ATTTCTTCCACAGCAGCAAAGGCCACAACCCGTTCCCCATAGGTAGTCTCT 2423821
Query 46801 TTAT---GAATCCACCTTTGAGCCCAATCAGCCTTTTTCTTTACACAAGGCATTGTTTCT 46857
|| | |||||| |||||||| |||| ||||| |||||||||| || ||
Sbjct 2423820 TTGTCCCCAATCCAATGCAAGGCCCAATCTGCCTCCTTCTTCCCACAAGGCATCGTCTCA 2423761
Query 46858 ATAGCATTAAAGAGAAAGtttttttCATCACTATCTTTAACATATGTATCTATTAAAAGA 46917
|| ||||| |||||||| | |||| | ||||||| || | || | | |||
Sbjct 2423760 ATGGCATTGAAGAGAAATTCCCTTTCTTTGGAATCTTTA----ATTTGTCAGTGAGGAGA 2423705
Query 46918 CTATACAT--------TTCTGA-ATGAATGTTTTCAATAGCCATCTGAAATCCGTAAAAA 46968
|| |||| |||||| || ||| |||| | || || || || || || |||
Sbjct 2423704 CTGCACATCTCATCCATTCTGAGATATATGATTTCCGTGGCAATTTGGAAGCCATAGAAA 2423645
Query 46969 CATCTTGCTTCAGTAATCTGTACCTCTGTACAAAATCGTTCAGACAAATTCTCATTCACT 47028
|| | ||||| || ||||| || || | ||| || || ||| || ||||| |||
Sbjct 2423644 CAGCGGGCTTCTGTCATCTGAACTACTTGGCTAAACCGCTCCACCAAGTTTTCATTTACT 2423585
Query 47029 ATTCCATCACTAGCAGCAAAAAATGCCAATACATGTTTAATAAAATATTTTTCATCGGTA 47088
| |||||||| || ||||| || |||| ||||| |||||||| | || |
Sbjct 2423584 CTGCCATCACTTGCTGCAAAGAAAGCCAGAACATGGCATATAAAATA---GCCCTCAGGC 2423528
Query 47089 GTCAGTTTATTCCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAGAAT 47148
|||| | |||| || || || || | ||| || |||| |||||||| ||
Sbjct 2423527 TTCAGGGATTCCCAGCGCCGAATGTCCTTGGAAAGATCCACCTCTTTAGCTGTCCGAAAG 2423468
Query 47149 GACGCCTCTGCTTTTTTATACATATTCCATATATCA 47184
|| ||||| ||||| |||| ||| | ||| | ||||
Sbjct 2423467 GAGGCCTCAGCTTTCTTATCCATCTGCCAAAGATCA 2423432
>seq3057
Length=47849
Score = 123 bits (136), Expect = 4e-23
Identities = 107/133 (80%), Gaps = 0/133 (0%)
Strand=Plus/Minus
Query 75722 TGAAATTCTCCAGACAATACTCTTCGAGTGTAAATATTACTGGTATATGGTTCCACAGAT 75781
||||||||||| ||||| ||||| ||||| || || || || ||||| ||||| | ||
Sbjct 11465 TGAAATTCTCCTGACAAGACTCTGCGAGTATAGATGTTGCTTGTATAAGGTTCAATGGAC 11406
Query 75782 TCATTGTTTCCCAAAATTTGAGCAGTTGAAGCAGTCGGCATAGGTGCCACCAATAAACTA 75841
||||| ||||||| ||| ||||||||||||||||| ||||| || || | | ||||||
Sbjct 11405 TCATTATTTCCCAGAATCTGAGCAGTTGAAGCAGTAGGCATCGGGGCAATAAGTAAACTG 11346
Query 75842 TTTCTGAGACCAT 75854
||||| | |||||
Sbjct 11345 TTTCTTATACCAT 11333
Score = 87.8 bits (96), Expect = 3e-12
Identities = 116/161 (72%), Gaps = 0/161 (0%)
Strand=Plus/Minus
Query 75986 GCTAGTTCGCAACTCGCCTCTAACGCACCGTAATAAATTGTTTCGAAAATCTTCTTATTA 76045
|| || || || || || || || || || |||||||| ||||| || |||| ||||||
Sbjct 7306 GCCAGGTCACAGCTGGCTTCCAAGGCTCCATAATAAATAGTTTCAAATATCTGCTTATTC 7247
Query 76046 AGATCTTGCGCTTCAAGACTATCAAAAGGATAATGTAAAAGAATAAATGCATCTGCTAGT 76105
|| || ||||| |||| ||||||||||| | ||||| || |||||||| ||
Sbjct 7246 AGTAGCTGGGCTTCTGGACTCTCAAAAGGATACCTCATCAGAATGAAAGCATCTGCCAGA 7187
Query 76106 CCCTGAACTCCAATACCAATAGGTCTATGTCTCTTATTGGA 76146
|| || || || || ||||| || | ||| | ||||| ||
Sbjct 7186 CCTTGTACCCCGATTCCAATGGGGCGATGGCGTTTATTTGA 7146
>seq497
Length=1337528
Score = 120 bits (132), Expect = 4e-22
Identities = 107/134 (80%), Gaps = 0/134 (0%)
Strand=Plus/Minus
Query 46654 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGCCCAGGCATTAGTCCACGCTTTTTG 46713
|||||||| ||||| | ||| || ||||| ||||| |||||||| || ||||| || |||
Sbjct 317825 TCATCTCTGCTAATAAGTTCATTGGAAAACGTGAGGCCAGGCATCAGGCCACGTTTCTTG 317766
Query 46714 AGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACAGCCGCGAATGCG 46773
||||| ||||| | || ||||| ||||||||||| || ||||| ||||| || || ||
Sbjct 317765 AGCCAGAATATTGATGCAAAAGAACCAGAAAAGAAGATTCCTTCCACAGCGGCAAAGGCC 317706
Query 46774 ACAAGTCTCTCTCC 46787
|||| || |||||
Sbjct 317705 ACAACCCTTTCTCC 317692
>seq590
Length=1172511
Score = 111 bits (122), Expect = 2e-19
Identities = 106/136 (78%), Gaps = 0/136 (0%)
Strand=Plus/Minus
Query 46652 CTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGCCCAGGCATTAGTCCACGCTTTT 46711
|||||||||| || || | ||| || ||||| ||||| |||||||| || || | || |
Sbjct 827238 CTTCATCTCTGCTGATGAGTTCATTGGAAAACGTGAGTCCAGGCATAAGACCTCTTTTCT 827179
Query 46712 TGAGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACAGCCGCGAATG 46771
| ||||| |||||||| || |||||||| || ||||| || ||||||||||| || || |
Sbjct 827178 TTAGCCAGAATATAGCAGCAAAAGATCCCGAGAAGAAAATCCCTTCTACAGCAGCAAAAG 827119
Query 46772 CGACAAGTCTCTCTCC 46787
| || | ||| || ||
Sbjct 827118 CCACCACTCTTTCCCC 827103
Score = 93.3 bits (102), Expect = 6e-14
Identities = 72/86 (84%), Gaps = 0/86 (0%)
Strand=Plus/Minus
Query 47127 TACTTCTTCAGCTGTCCAGAATGACGCCTCTGCTTTTTTATACATATTCCATATATCACG 47186
||| ||||| ||||||||||| || |||| ||| | ||||||||| ||||| |||||| |
Sbjct 809076 TACCTCTTCTGCTGTCCAGAAGGATGCCTGTGCCTGTTTATACATTTTCCAAATATCAGG 809017
Query 47187 ATATTGGATCGGAAAAATAACAAATC 47212
|||||||| ||||| || |||||||
Sbjct 809016 GTATTGGATTGGAAAGATGACAAATC 808991
Score = 86.0 bits (94), Expect = 9e-12
Identities = 85/110 (77%), Gaps = 0/110 (0%)
Strand=Plus/Minus
Query 47013 CAAATTCTCATTCACTATTCCATCACTAGCAGCAAAAAATGCCAATACATGTTTAATAAA 47072
|||||| |||||||| ||||||||||| || |||||||| || |||| || |||||
Sbjct 812807 CAAATTTTCATTCACAATTCCATCACTGGCTGCAAAAAAGGCTAATATGTGAGAGATAAA 812748
Query 47073 ATATTTTTCATCGGTAGTCAGTTTATTCCAGTCATTGATATCTTTTGATA 47122
|||||| ||||| | | || || ||||||| | || ||| |||||||
Sbjct 812747 ATATTTCTCATCTGATTTAAGCTTGTTCCAGTGAGGGAGATCCTTTGATA 812698
>seq3107
Length=44217
Score = 96.9 bits (106), Expect = 5e-15
Identities = 121/166 (73%), Gaps = 0/166 (0%)
Strand=Plus/Minus
Query 77339 CTAAATAGtttttttGTTTCCTTGTGTAGATTCGATACGGCTATTCTAGCAGCTAGAATT 77398
|| || | ||| |||||||| ||||| | || || || || || || || || || ||
Sbjct 40435 CTGAACACTTTCTTTGTTTCTTTGTGCAAGTTGGACACTGCAATCCTTGCTGCCAGGATG 40376
Query 77399 GCATAGTCAGGATGTTGTGTAGTGCAGGTGGCTGCTATTTCTGCCGCTAAAGTATCTAAT 77458
||||||||||| || | || || |||| || ||| | || || || |||||||||| |
Sbjct 40375 GCATAGTCAGGGTGCTCAGTCGTCAAGGTCGCAGCTGTCTCAGCAGCCAAAGTATCTAGT 40316
Query 77459 TCTATAGTAGTAACTCCGTTATATAGCCCTTGAATAACTTTCATGG 77504
|| | ||| || || || | |||| ||||| || ||||||||||
Sbjct 40315 TCCACAGTGGTGACCCCACTGTATAAGCCTTGGATTACTTTCATGG 40270
>seq37469
Length=236
Score = 93.3 bits (102), Expect = 6e-14
Identities = 113/154 (73%), Gaps = 0/154 (0%)
Strand=Plus/Plus
Query 77351 tttGTTTCCTTGTGTAGATTCGATACGGCTATTCTAGCAGCTAGAATTGCATAGTCAGGA 77410
|||||||| ||||| | || || || || || || || || || || |||||||||||
Sbjct 1 TTTGTTTCTTTGTGCAAGTTGGACACTGCAATCCTTGCTGCCAGGATGGCATAGTCAGGG 60
Query 77411 TGTTGTGTAGTGCAGGTGGCTGCTATTTCTGCCGCTAAAGTATCTAATTCTATAGTAGTA 77470
|| | || || |||| || ||| | || || || |||||||||| ||| | ||| ||
Sbjct 61 TGCTTAGTCGTCAAGGTCGCAGCTGTCTCAGCAGCCAAAGTATCTAGTTCCACAGTGGTG 120
Query 77471 ACTCCGTTATATAGCCCTTGAATAACTTTCATGG 77504
|| || | |||| ||||| || ||||||||||
Sbjct 121 ACCCCACTGTATAAGCCTTGGATTACTTTCATGG 154
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 712208392165440
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