Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ailuropoda_20melanoleuca_20[refseq_20GCF_5F000004335.2_202009-12-15] 81,467 sequences; 2,299,509,015 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq456 149 1e-30 seq17 143 6e-29 seq404 98.7 2e-15 seq861 91.5 3e-13 seq2576 89.7 1e-12 seq1215 89.7 1e-12 seq1006 89.7 1e-12 seq471 89.7 1e-12 seq323 89.7 1e-12 seq522 86.0 1e-11 >seq456 Length=1409724 Score = 149 bits (164), Expect = 1e-30 Identities = 171/230 (74%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 ||||| | |||||| || ||||| || | || ||||| ||||||||||| |||| | Sbjct 1113409 CCACCTCTCAGGCGCAGGACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAATCAGAA 1113350 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 || ||||||||||| || || || || || |||||||| | | || |||||| || Sbjct 1113349 AGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGGGGG 1113290 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 || ||||| || ||||||||||| || || || | ||||| ||||| | || || Sbjct 1113289 ATGCCCTCTTTATCTTGGATCTTGGCCTTCACATTCTCGATGGTGTCACTGGGCTCCACC 1113230 Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATTTT 283102 || || ||||| ||||| || |||| ||||| ||||| ||||||||||| Sbjct 1113229 TCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCATTTT 1113180 Score = 143 bits (158), Expect = 6e-29 Identities = 168/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 ||||| | |||||| || ||||| || | || ||||| ||||||||||| |||| | Sbjct 1113637 CCACCTCTCAGGCGCAGGACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAATCAGAA 1113578 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 || ||||||||||| || || || || || |||||||| | | || |||||| || Sbjct 1113577 AGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGGGGG 1113518 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 || ||||| || ||||||||||| || || || | ||||| ||||| | || || Sbjct 1113517 ATGCCCTCTTTATCTTGGATCTTGGCCTTCACATTCTCGATGGTGTCACTGGGCTCCACC 1113458 Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || || ||||| ||||| || |||| ||||| ||||| |||||||| Sbjct 1113457 TCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 1113411 Score = 143 bits (158), Expect = 6e-29 Identities = 168/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 ||||| | |||||| || ||||| || | || ||||| ||||||||||| |||| | Sbjct 1113865 CCACCTCTCAGGCGCAGGACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAATCAGAA 1113806 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 || ||||||||||| || || || || || |||||||| | | || |||||| || Sbjct 1113805 AGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGGGGG 1113746 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 || ||||| || ||||||||||| || || || | ||||| ||||| | || || Sbjct 1113745 ATGCCCTCTTTATCTTGGATCTTGGCCTTCACATTCTCGATGGTGTCACTGGGCTCCACC 1113686 Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || || ||||| ||||| || |||| ||||| ||||| |||||||| Sbjct 1113685 TCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 1113639 Score = 143 bits (158), Expect = 6e-29 Identities = 168/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 ||||| | |||||| || ||||| || | || ||||| ||||||||||| |||| | Sbjct 1114093 CCACCTCTCAGGCGCAGGACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAATCAGAA 1114034 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 || ||||||||||| || || || || || |||||||| | | || |||||| || Sbjct 1114033 AGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGGGGG 1113974 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 || ||||| || ||||||||||| || || || | ||||| ||||| | || || Sbjct 1113973 ATGCCCTCTTTATCTTGGATCTTGGCCTTCACATTCTCGATGGTGTCACTGGGCTCCACC 1113914 Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || || ||||| ||||| || |||| ||||| ||||| |||||||| Sbjct 1113913 TCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 1113867 Score = 140 bits (154), Expect = 7e-28 Identities = 167/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 ||||| | ||| || || ||||| || | || ||||| ||||||||||| |||| | Sbjct 1114321 CCACCCCTCAGACGGAGAACCAGGTGGAGAGTCGACTCTTTCTGGATGTTGTAATCAGAA 1114262 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 || ||||||||||| || || || || || |||||||| | | || |||||| || Sbjct 1114261 AGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGGGGG 1114202 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 || ||||| || ||||||||||| || || || | ||||| ||||| | || || Sbjct 1114201 ATGCCCTCTTTATCTTGGATCTTGGCCTTCACATTCTCGATGGTGTCACTGGGCTCCACC 1114142 Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || || ||||| ||||| || |||| ||||| ||||| |||||||| Sbjct 1114141 TCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 1114095 >seq17 Length=4663558 Score = 143 bits (158), Expect = 6e-29 Identities = 175/240 (73%), Gaps = 9/240 (4%) Strand=Plus/Plus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 || || | || ||| || |||| || | ||| ||| || |||||||||||||||| Sbjct 4172513 CCTCCCCTCAAGCGCAGGACCAAGTGCAGAGTGGATTCCTTCTGGATGTTGTAGTCAGAC 4172572 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 || ||||| ||||| || || |||||||| ||||||||||| | || ||||| || Sbjct 4172573 AGGGTGCGCCCATCTTCCAGCTGTTTCCCCGCAAAGATCAACCTCTGCTGGTCGGGGGGG 4172632 Query 282993 ATACCCTCC---------TTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAA 283043 || |||||| ||||| |||||||| || || ||| | ||||| ||||| Sbjct 4172633 ATGCCCTCCTTGTCCTGTTTGTCCTGGATCTTCGCCTTGACGTTCTCGATGGTGTCGCTT 4172692 Query 283044 GCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATTTTC 283103 | || || || || ||||| |||||||| ||||| ||||| ||||| ||||||||| || Sbjct 4172693 GGCTCCACCTCCAGGGTGATGGTCTTACCTGTCAAGGTCTTCACGAAGATCTGCATTGTC 4172752 Score = 89.7 bits (98), Expect = 1e-12 Identities = 55/59 (93%), Gaps = 0/59 (0%) Strand=Plus/Minus Query 168753 TTAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCGA 168811 ||||||||||||| |||||||| ||||||||||| |||||||||||||| ||||||||| Sbjct 4183303 TTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTCCCCGA 4183245 Score = 89.7 bits (98), Expect = 1e-12 Identities = 55/59 (93%), Gaps = 0/59 (0%) Strand=Plus/Minus Query 168753 TTAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCGA 168811 ||||||||||||| |||||||| ||||||||||| |||||||||||||| ||||||||| Sbjct 4185727 TTAGTATAGTGGTAAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTCCCCGA 4185669 >seq404 Length=1519820 Score = 98.7 bits (108), Expect = 2e-15 Identities = 57/59 (97%), Gaps = 0/59 (0%) Strand=Plus/Plus Query 168753 TTAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCGA 168811 |||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||| Sbjct 730851 TTAGTATAGTGGTTAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCAATTCCCCGA 730909 >seq861 Length=883633 Score = 91.5 bits (100), Expect = 3e-13 Identities = 136/193 (70%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 282910 CTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGA 282969 |||| |||||||||||||||| ||| || ||||||| || || || || || ||||||| Sbjct 499600 CTTTCTGGATGTTGTAGTCAGAAAGAATGTGGCCATCTTCCAGCTGCTTGCCTGCAAAGA 499541 Query 282970 TCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTAT 283029 | | | || ||| || || || || || || || ||| |||| || || || | | Sbjct 499540 TGAGCCTCTGCTGGCCAGGGGGGATGCCTTCTTTATCCTGGGTCTTGGCCTTCACATTCT 499481 Query 283030 CGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGA 283089 || || || | ||| | || || ||||| ||||| || |||| ||||| |||| Sbjct 499480 TCATGGTATCGCTGGGTTCCAACTCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGA 499421 Query 283090 ATATCTGCATTTT 283102 | | ||| ||||| Sbjct 499420 AGACCTGTATTTT 499408 >seq2576 Length=112281 Score = 89.7 bits (98), Expect = 1e-12 Identities = 55/59 (93%), Gaps = 0/59 (0%) Strand=Plus/Minus Query 168753 TTAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCGA 168811 ||||||||||||| |||||||| ||||||||||| |||||||||||||| ||||||||| Sbjct 91005 TTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTCCCCGA 90947 >seq1215 Length=622372 Score = 89.7 bits (98), Expect = 1e-12 Identities = 55/59 (93%), Gaps = 0/59 (0%) Strand=Plus/Plus Query 168753 TTAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCGA 168811 ||||||||||||| |||||||| ||||||||||| |||||||||||||| ||||||||| Sbjct 274056 TTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTCCCCGA 274114 Score = 89.7 bits (98), Expect = 1e-12 Identities = 55/59 (93%), Gaps = 0/59 (0%) Strand=Plus/Minus Query 168753 TTAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCGA 168811 ||||||||||||| |||||||| ||||||||||| |||||||||||||| ||||||||| Sbjct 337590 TTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTCCCCGA 337532 >seq1006 Length=751320 Score = 89.7 bits (98), Expect = 1e-12 Identities = 133/189 (70%), Gaps = 0/189 (0%) Strand=Plus/Plus Query 282911 TTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGAT 282970 ||| ||||| || |||| | || | | ||||||||| || ||||| || ||| | Sbjct 731839 TTTCTGGATATTACAGTCTGATAGGGCACAGCCATCCTCCAGCTGTTTGCCTACAATAGT 731898 Query 282971 CAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATC 283030 || || || |||||| | |||||||| |||||||||||| || ||||| || | || Sbjct 731899 CAGACACTGCTGGTCAGGCAAAATACCCTGCTTGTCTTGGATTTTGGCTTTGACATTCTC 731958 Query 283031 GATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAA 283090 || ||||| | |||||| || || || ||||| || |||| ||||| | || Sbjct 731959 AATGGTGTCACTGCACTGGACTTCAAGGGTTATGGTCTTGCCTGTCACTGTCTTCATAAA 732018 Query 283091 TATCTGCAT 283099 |||||||| Sbjct 732019 GATCTGCAT 732027 >seq471 Length=1376740 Score = 89.7 bits (98), Expect = 1e-12 Identities = 55/59 (93%), Gaps = 0/59 (0%) Strand=Plus/Plus Query 168753 TTAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCGA 168811 ||||||||||||| |||||||| ||||||||||| |||||||||||||| ||||||||| Sbjct 1126984 TTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTCCCCGA 1127042 >seq323 Length=1690371 Score = 89.7 bits (98), Expect = 1e-12 Identities = 55/59 (93%), Gaps = 0/59 (0%) Strand=Plus/Minus Query 168753 TTAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCGA 168811 ||||||||||||| |||||||| ||||||||||| |||||||||||||| ||||||||| Sbjct 480813 TTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTCCCCGA 480755 >seq522 Length=1281495 Score = 86.0 bits (94), Expect = 1e-11 Identities = 156/227 (69%), Gaps = 1/227 (0%) Strand=Plus/Plus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 ||||| ||||| ||||| ||| | | || ||||| || || | ||||| | Sbjct 1054669 CCACCCTGCAGGAGAAGTTCCAAGTACAGGGTTGCCTCTTTCTGAATATGATAGTCTGAG 1054728 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 || ||||||||||||| || ||||| || ||||| || | | | || ||||| | | Sbjct 1054729 AGAATGCGGCCATCCTCCAGCTGTTTACCCGCAAAAATGAGATGCTGCGGGTCAGGCAGG 1054788 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 || ||||||||||| ||||| || ||||| | | || | | ||| | ||||| Sbjct 1054789 ATGCCCTCCTTGTCGTGGATTTTGGCTTTAATTTTCTCAGTGGCGTCACTGGACTCGACC 1054848 Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 |||||| ||| ||||| | |||| ||||| || | |||||||| Sbjct 1054849 TCGAGAATGACGGTCTT-GCTGTCAGGGTCTTCACAGAGATCTGCAT 1054894 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1045646617875418