Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ailuropoda_20melanoleuca_20[refseq_20GCF_5F000004335.2_202009-12-15] 81,467 sequences; 2,299,509,015 total letters Query= NC_033176.1 Length=224064 Score E Sequences producing significant alignments: (Bits) Value seq858 163 4e-35 seq116 125 1e-23 >seq858 Length=884820 Score = 163 bits (180), Expect = 4e-35 Identities = 183/245 (75%), Gaps = 0/245 (0%) Strand=Plus/Plus Query 9235 CCGATAATGATGAGTCGAGTGGTCTGGAACAGTTGCTCGTCACTCCATTCTGGATGTTCT 9294 ||||| | ||||| | ||||||||||||| |||| ||| ||| ||||| || || Sbjct 462140 CCGATCAGTATGAGCCTGCTGGTCTGGAACAGCCGCTCATCATCCCACTCTGGGTGCTCC 462199 Query 9295 TGTTTCAGAACATCGCACACCCTGTTGTGTTCCCTGAGCCAGATAGTGGCGTACATCATG 9354 ||||| || ||||| ||||| ||||| ||||||| | ||| || ||||| |||||||| Sbjct 462200 TGTTTAAGCACATCACACACTCTGTTATGTTCCCGCAACCAAATCGTGGCATACATCATC 462259 Query 9355 AGCCCAGGTACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACGCATGTTTTCGGGCACT 9414 || ||||| ||||| || ||| | || || || || || | || | || |||||| || Sbjct 462260 AGACCAGGCACCAGCCCGAAAACTTCCTGGCCCACGGCAAACCGTAGGTGTTCGGGAACA 462319 Query 9415 TCGGGAGGATAGATCATGTGCACCTGGACGTCTTTGACCGAGGGGGGATACATTTCACCG 9474 | ||| || |||||||| | |||||| |||||||| | ||| ||||||| || || Sbjct 462320 TGGGGTGGGTAGATCATCTCCACCTGAGTATCTTTGACTGTGGGAGGATACACCTCTCCA 462379 Query 9475 TCAAT 9479 ||||| Sbjct 462380 TCAAT 462384 Score = 156 bits (172), Expect = 6e-33 Identities = 217/304 (71%), Gaps = 0/304 (0%) Strand=Plus/Plus Query 8283 GAACTCGGAACGCGGCCAACGGACACCCCTTGACGTTGCTACAGACTAGAGACTGAATAG 8342 |||| | |||||| | || ||||| ||||| ||||| | |||| ||||||||||| | Sbjct 460561 GAACACTGAACGCAGTAAAAGGACAGCCCTTCACGTTATTGCAGATGAGAGACTGAATTG 460620 Query 8343 TTGCGCTCTTGACGATCCCGAACCCCACGTCTCCGCCGAAGGTGCTGGGCTTCCAGTACC 8402 || | |||| ||| || || || ||||| || || ||||| ||||||||||| Sbjct 460621 AGGCAGTGTTGATGATTTTAAAGCCTACTTCTCCACCAAAAGTGCTAGGCTTCCAGTAGT 460680 Query 8403 CCGGGGAGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAGAACGGAGCCCCCAACTCGA 8462 | || || |||||| || |||| || ||||| | ||| || || || |||| || | Sbjct 460681 CAGGCGAACAGATGGGATTACCCATAAGTCCTTTCAAGGAAAATGGTGCTCCCATTTCTA 460740 Query 8463 GAATGCTCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACA 8522 || ||||||| |||||||| | ||||| |||||||| |||| || | | |||| Sbjct 460741 CCATAGTCTCACCAAAGATGGCATCTGGACGAGGCTTTTCTACCAGGAGGGCAGGATACA 460800 Query 8523 GCTCCACAGCCTCGACGTCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATCTCCTTTTCTC 8582 |||||| || || | || || ||||||||| | | ||||| || ||||| |||| Sbjct 460801 GCTCCATGGCATCAATATCACCATAAAGGGCCTCTAACCCCGCAGCCATTTCCTTCTCTC 460860 Query 8583 CTGT 8586 |||| Sbjct 460861 CTGT 460864 Score = 125 bits (138), Expect = 1e-23 Identities = 149/202 (74%), Gaps = 0/202 (0%) Strand=Plus/Plus Query 9649 TCTTACCCCATGTCCCAGTCCTTTAGTGAAGGCCGGGCCTCGCGCCAAATCAGTCCTAAA 9708 |||||||||||| ||||||||||| ||||| || || |||||| ||| ||| | || Sbjct 463177 TCTTACCCCATGGCCCAGTCCTTTGGTGAAAGCTGGCCCTCGCTTATGATCTGTCTTGAA 463236 Query 9709 AAACTGGTGCGTGAAATGTTGGCCAAAAAAGGCAAACATTAAGTTGGTGCCCTGGGGATC 9768 ||| || || || || || ||| |||| || |||||||| | || |||||||||||||| Sbjct 463237 AAATTGATGGGTAAAGTGCTGGGCAAAGAATGCAAACATCATATTTGTGCCCTGGGGATC 463296 Query 9769 GGGAGTGAAGGTCCTCCGAAGAAGAGTTTTTTCCACAACGTGTGCCGCATCCGGCAGCTT 9828 ||| |||| | || | |||||| ||||||||||| | | | ||| || |||| Sbjct 463297 AGGAATGAACTTTCTTCTTAGAAGAAATTTTTCCACAATCTCTTTTGAATCAGGAAGCTC 463356 Query 9829 TGTTTTACCTGGTGAACGAGAA 9850 | | || |||| || ||||| Sbjct 463357 TTTCTTGCCTGAAAAATGAGAA 463378 Score = 86.0 bits (94), Expect = 9e-12 Identities = 110/152 (72%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 9908 TCACCTTTGACCCCAACAGGAGTTGGACAATCGTGAGGAACCGGAGGTAGAATCCTTGCG 9967 |||||||| || || | || |||||||| || | || || || || ||| || | Sbjct 463786 TCACCTTTCACACCCATGGGTGTTGGACAGTCATCAGCCACAGGGGGAAGAGCTCTGGTA 463845 Query 9968 TAATAGGAGAGATTGGAGAAAGCTTCCCAGCTTGGGTATTCGTAGTCCGCGTTGTATATG 10027 || ||||||||||| || || |||||||||||| || | |||||| ||||||| | Sbjct 463846 TAGTAGGAGAGATTAGAAAAGGCTTCCCAGCTTTTATAGCCATAGTCCACGTTGTAAGTT 463905 Query 10028 GGAGGGCTGTCAATCAAATCGGATCTACCTGA 10059 || || || |||||||||| || || |||| Sbjct 463906 GGTGGACTCTCAATCAAATGTGACCTCGCTGA 463937 >seq116 Length=2671106 Score = 125 bits (138), Expect = 1e-23 Identities = 170/237 (72%), Gaps = 0/237 (0%) Strand=Plus/Plus Query 8349 TCTTGACGATCCCGAACCCCACGTCTCCGCCGAAGGTGCTGGGCTTCCAGTACCCCGGGG 8408 ||||||| || ||| |||| || || ||||| ||||| |||||||||||| | || | Sbjct 65633 TCTTGACCATATTGAAGCCCATCTCACCACCGAATGTGCTTGGCTTCCAGTACTCTGGAG 65692 Query 8409 AGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAGAACGGAGCCCCCAACTCGAGAATGC 8468 |||||||| ||| | | |||||| |||||||| || |||||||| | || | || | Sbjct 65693 AGCAGATGGGATTCCCTAGGAGGCCCTTGAGGGAAAAGGGAGCCCCAATTTCTATCATAC 65752 Query 8469 TCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAGCTCCA 8528 |||| || ||||||| ||| ||| || ||| |||| | | || | ||| | ||||| Sbjct 65753 TCTCCCCAAAGATGGAGTTTGGATGGCACTTCTCCAGAAGTAGCCCCGGGTAGAACTCCA 65812 Query 8529 CAGCCTCGACGTCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATCTCCTTTTCTCCTG 8585 || |||| |||||| || || | | || || || |||||||| || |||| Sbjct 65813 AGGCATCGATGTCTCCATACAGCTCTTCCAACTCAGCTGCAATCTCCTTCTCCCCTG 65869 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 716146777471680